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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR041095
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 28 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.729s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0321400.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214048 77219779 +
2 domain predictions
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LotjaGi1g1v0321400.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214237 77219587 +
2 domain predictions
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LotjaGi1g1v0321400.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216023 77219294 +
2 domain predictions
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LotjaGi1g1v0321400.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216036 77219294 +
2 domain predictions
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LotjaGi1g1v0321400.6
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216831 77219294 +
2 domain predictions
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LotjaGi1g1v0600400.15
n.a. Elongation factor G; TAIR: AT1G45332.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|Q9C641|EFGM1_ARATH Elongation factor G-1, mitochondrial; TrEMBL-Plants: tr|A0A151SGJ9|A0A151SGJ9_CAJCA Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114500218 114503592 +
2 domain predictions
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LotjaGi1g1v0600400.2
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473527 114505407 +
2 domain predictions
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LotjaGi1g1v0600400.3
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
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LotjaGi1g1v0600400.4
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
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LotjaGi1g1v0600400.5
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
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LotjaGi1g1v0600400.6
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
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LotjaGi1g1v0600400.7
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|V7B4Z6|V7B4Z6_PHAVU Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
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LotjaGi3g1v0139100.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18293635 18297865 +
2 domain predictions
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LotjaGi3g1v0139100.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18294169 18297315 +
2 domain predictions
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LotjaGi3g1v0139100.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 LjG1.1_chr3 18294847 18297315 +
2 domain predictions
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LotjaGi3g1v0370000.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657630 75661480 -
2 domain predictions
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LotjaGi3g1v0370000.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660330 -
2 domain predictions
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LotjaGi3g1v0370000.3
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660842 -
2 domain predictions
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LotjaGi3g1v0370000.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 LjG1.1_chr3 75657825 75660930 -
2 domain predictions
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LotjaGi3g1v0370300.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75901874 75905775 -
2 domain predictions
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LotjaGi3g1v0370300.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75904813 -
2 domain predictions
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LotjaGi3g1v0370300.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905310 -
2 domain predictions
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LotjaGi3g1v0370300.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905339 -
2 domain predictions
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LotjaGi3g1v0370300.6
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1MJ86|I1MJ86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 LjG1.1_chr3 75902347 75905517 -
2 domain predictions
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LotjaGi4g1v0209900.1
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A151SKP1|A0A151SKP1_CAJCA Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48730360 48736399 -
2 domain predictions
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LotjaGi4g1v0209900.2
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735402 -
2 domain predictions
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LotjaGi4g1v0209900.3
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735687 -
2 domain predictions
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LotjaGi4g1v0209900.4
n.a. Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 LjG1.1_chr4 48732252 48735687 -
2 domain predictions
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