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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0154700 |
| Transcript ID | LotjaGi3g1v0154700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21043283..21045325) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAAAACCAGACCCGGCAGAAAAGACATGGACTCATACACCATCAAAGGCACCAACAAGATCGTAAGAGGTAATCG CTCATACCCTTTTCTCCTTTCACCTACCCAGTTGCGAAAATGCCTTCAAAATCGTTCCTTTTGGCGGAAACAAGTGTTTG AAAGTTGAAACCATGTTGGTGTTCTGTGGGTTAAGAAATGTGTGTTGTTTTCGTTTGCAGCTGGGGATTGTGTGTTGATG CGTCCTTCTGATACGAGCAAGCCGCCATACGTCGCGCGCGTCGAGAAGATCGAGCAGGATACTAGAAGCAATGTGAAGGT CCGTGTGAGGTGGTACTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAATTCCACGGAGTGAAAGAGCTGTTTTTGT CTGACCATTTTGATGTGCAGAGTGCTCACACGATTGAAGGGAAGTGCATTGTGCACTCTTTCAAGAACTATACCAAGCTT GAGAATGTAGGTGCTGAAGATTATTATTGTAGGTTTGAGTACAAGGCTGCTACTGGAGCTTTCACACCTGACCGTGTTGC TGTGTGAGTTTACTTTCGTCGTTTTGAAAAGATGGAATATTGGTGTTTCGAATCGAGTAGTTGAATTGTGTTTTTTTTTT AATTTTGATTTTTGTTTGTTGATTTGGCTTATATTTTGAAGGTACTGCAAATGCGAGATGCCTTATAACCCGGATGACCT CATGGTGCAGTGTGAGGGGTGCAAGGATTGGTAAATTCAGTTTATTCTGCTTTACTTTGTTTGCTTTTACTGGGTTTTCA GTGAACCTTTAGTTGTTCAGATCTGTAATTTTAGCATTAGATGTGTTGTTTGCTTGGATGATGGAATTTATGGATATTCC AGCTCCTGCACAGCCAGCCTAAAGCTTGTTGGCTTGTTGCCCCTTAATATAAAGATGGATTGGTAAAAGACCTCAAAAAA AATTCCAGTGTCTGGATGGAGGAAAATGGGCGAGGAGGGGTGCGGGGGGTGAAAGGGGTGCGGGTCAACATCCCTCCTTA CTCCATTTTGGCTCTCCTCAGATTTTGGAGGGATTTTGAAGGTAGGGGGAGGGGGGTCATATGGATTTAAAACATTTTAA ATACATTGATTAAGATACTTCTACAATAAAACCACAGGTATAAGGTCTTTGAAGTAAAAAGTTTTAAAAATCCCCCCGAC CCCCTCCCTTTCAACCAAACAGAATATCGAATTGAAATCACATGTTCCTTCTCCCCTAACTTATTTGAACTAAACACTGC CTTCAAGGAGCCATAGGAAGATGTTTTCCCAAGTCCAATAGTTTGAATACACTTTGAAGTGTTTCATTATTGGAACTGTC TCGGCGTGTACACACATTTTGCATGTCACTCTTGACTGCCTTTGCTTGTACAGTTGAAGACGAAACACTTGAGATAAATG CAGGAATTCGAGAGCATGTAAAAGATTTTCAGTTTACAAGGGAGCTCCACGTAATCATAATAATAAAATCAGCTGTAGTT TGTATTAAGTCGAAACAGCTGATGTATCCACGTTAGTCGATTATTAAATCTTGAATGGCTTCTGTTGGATTTTGTCTTAA ATATGTGTGATTCAATATAAATTGAATTATGCAAGGGCTTATTTCTTTTGTCTTTTGTAAACTCTGACCTTATTTCCCAT TAAACCTCATTCACTGCAACAGATTGTTAAATTTATGGAGTATCTGAGAAGTCGCGCTATTATGGTTTTTTGTCTGTTTA TTTCCACATTGATTTTATGAGAGAAACACTTTTCAATTTTGTAGGTTTCTTGTAGGTACCATCCTGCTTGTGTGGGCATG ACTATTGAGGAAGCAAAGAAATTGGAGCATTTTGTATGTTCTGAATGTTCATCTGACGATGACATGAAGAAACCCCAGGC TACATTTCATGTATCACCAGGATCCGATATCAAGGTGAGATGTGATCCTGCCTCAAGTCCTAAAATATGAGATGCACTTT TGCTATATTGTTTCTTAATTTTATGTTCCCAGCACATGCTTGA
CDS sequence (LotjaGi3g1v0154700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAAACCAGACCCGGCAGAAAAGACATGGACTCATACACCATCAAAGGCACCAACAAGATCGTAAGAGCTGGGGA TTGTGTGTTGATGCGTCCTTCTGATACGAGCAAGCCGCCATACGTCGCGCGCGTCGAGAAGATCGAGCAGGATACTAGAA GCAATGTGAAGGTCCGTGTGAGGTGGTACTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAATTCCACGGAGTGAAA GAGCTGTTTTTGTCTGACCATTTTGATGTGCAGAGTGCTCACACGATTGAAGGGAAGTGCATTGTGCACTCTTTCAAGAA CTATACCAAGCTTGAGAATGTAGGTGCTGAAGATTATTATTGTAGGTTTGAGTACAAGGCTGCTACTGGAGCTTTCACAC CTGACCGTGTTGCTGTGTACTGCAAATGCGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGGTGCAAG GATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAGGAAGCAAAGAAATTGGAGCATTTTGTATGTTCTGAATGTTC ATCTGACGATGACATGAAGAAACCCCAGGCTACATTTCATGTATCACCAGGATCCGATATCAAGGTGAGATGTGATCCTG CCTCAACACATGCTTGA
Protein sequence (LotjaGi3g1v0154700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEESIGGRRQFHGVK ELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK DWYHPACVGMTIEEAKKLEHFVCSECSSDDDMKKPQATFHVSPGSDIKVRCDPASTHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 127 | 127 | 1.9E-28 | ||
| PANTHER | 1 | 210 | 210 | 8.4E-133 | – | |
| PANTHER | 1 | 210 | 210 | 8.4E-133 | – | |
| ProSiteProfiles | 21 | 136 | 116 | 23.753 | ||
| SMART | 21 | 136 | 116 | 8.2E-42 | ||
| CDD | 22 | 156 | 135 | 1.59921E-58 | – | |
| Pfam | 23 | 135 | 113 | 7.8E-23 | ||
| Gene3D | 128 | 202 | 75 | 4.2E-21 | ||
| SUPERFAMILY | 132 | 190 | 59 | 2.88E-19 | ||
| ProSiteProfiles | 138 | 189 | 52 | 9.196 | ||
| Pfam | 140 | 188 | 49 | 1.7E-10 | ||
| SMART | 140 | 187 | 48 | 1.7E-10 | ||
| ProSitePatterns | 141 | 186 | 46 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi3g1v0154700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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