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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0320200 |
| Transcript ID | LotjaGi3g1v0320200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67983670..67988064) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAACTGAGAAAGGCACATAAATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCTCTCAAATTCGGCAACTT TAAGCTTAAATCAGGCATCTCCTCACCAATCTACATAGACCTTCGCCTAATTGTATCTTACCCATCTGTCCTGCGGCAAA TTTCTCAAACTATGATCTCCTCTGTCTCCTCCACTTCATTTGACCTTGTCTGTGGTGTTCCTTACACTGCTCTGCCCATT GCTACTTGTGCCTCTGTCACTCACAACATCCCGATGGTCATGCGCCGCAAGGAAATCAAAGAGTATGGCACATCTAAAGC CATTGAAGGTGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGCGGCACGTCGGTTTTGGAAA CTGCTGCGCCGCTGCGTGCTACGGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAG AATTTGGAGAGTAATGGAATCAAGCTGCATGCTATTCTTAAGTTGACTGAAATGGTGAAGATTTTGAAGGAAAAAGGAAA GCTTGATCAAGAGATGGTAGGGGTTGTTATGAGATTCTTAGAGGAAAATCAGAAGGTTGCTGCTTTGGCAATTAAAGCTA AGGTCAAGGCATTGCCATATTTGAAGAGGGCTAATTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCT GAGAAGGAAAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACATGGTGAGAAT TTGGAATTCATACAAAGTAGGAAGAAATTTACTTATGACATTTTGTTTGATCTCTCATTTATGGTGGAAATGTTAGAGAC GGTTCTTAATATAAAAAATTGGTTGAAAATTTAAAGAGTCCTGTTCTCTGGATTATTATCAATGAGGTTATAATTAAAAG CTTGATCCCAATGAAGAAATTATCTAAACTAATGTGTTTGTTCTTCTGTGTCAGGTTGGGCCTGAGATATGCTTGCTGAA AACTCATGTGGATATTCTTCCAGATTTTACTCCTGATTTTGGTTCTAAGCTTCGCAAGGTAGAATGCTAAAAGAAGTCAT TTTTTCCTTTCAGTATACAGATCACTGGACAAATTTTTGCATCATGATATAGTTAGCATATGTACACTGGAGTAGTTTTG CTAGTATTTATTGAAAATATTATGCCGATTTCATGACTTTGACTTGTACATGAGTTTTATGGGGTTACGAGTCACTGAGA TTGTAGGACTAGACCTAATAATTGCTATATTCTGCTGAAGATTGCAGAAAAACACAACTTTTTAATCTTTGAGGACCGTA AATTTGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGGTTAGACTTTGCTTGTAAATTTTGGATTCTTTTTCTG TTTCCCTTCATCATTGTCTGCTTTTAATATGACATCATTTTGTTCTGTTATTTCAACAGAGGGATCTATCATATATTGGA TTGGGCTGATATAGTGAATGCTCATATAATCTCTGGTCCTGGAATTGTGGATGGACTAAAATTGAAGGTTTATCCTCTAT GATACTAGTCATAGCATTATATTGACTGGAGCCTGCCCGAAAATGCTAGTTTAACGCGTCTCTTGAACCATGCTCAGGGT TTGCCTCGCGGAAGGGGTCTGTTGCTGCTCGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCAATGC TGCAGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTTATCTCAGTCAATCCAGCATCATGGCCCGGGGCAC CCATAAATTCCTGTTTCATCCATGCCACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGGCAGCAATATAAT ACTCCATATTCTGTAAGTTTAGGCTTAAATAAGTTTTTCGTCCCTAACCTTTCCATAATACCTGGTTTTCGTCCCTCGCC GGAGCAAAGGTGGGCTTAGTCCCTAACCTTTGCCAAAACATTTGGTTTTCATCCCTCCGGAGCTCTGGGTCAACGCCGGA ACTCCGGTGGCCCATGTGGCATTGCCACATGGGATTAATGAGGCCAGGTGTTAATTATTATTATTTTTTAAATTAATAAC AAATTAACTCACTAATTAAAAACACTTAACTCACTAATTAAAAACCTCAAAGAAACTAAACACACTTTCTTCATTAGATC TGGAAAAATCTCTTCATCTTCATATGCCCATTCATCCTTAATCCTCCCCCTTCATCCATTTTCTCTGATAACTCTAAATT AAATAATAAAACCCCACCTTCAAACCCCAATTTCAATCTGTTCATCTTCAAACCCCATTTCATCACATGTTTTGGGTCAA TTTTTTCAACCAAAGGGAAAAGCTTCAAGTATCCACCGTCTTCACCATCAACACAGTCCTCCTCCATCTTTTTCATTCTG ATCCCAAATGCTTTGAAGGTCACACCTTTCCTCTTCAACCCTTCAAATCCCAACTCAAATGCATCCAAACCCATCAAACC CTTCTAAGCCATCGTTTCCCCGGAGCTCGCCTCACCAAATCCATAAACAACCAAAGGCCAGATCGTCCCCACCGTGACTC TAACAGATCAAGAACCAGGACGAAGAAATCGAGCAGATCGAGAGCCTGGTTCTCTATTTTCTCTTCTCTGTTCGATTTTC TGGGTTTTTGGTGAAGCTCGATGGTCATGGTTGTGGAACAAGGTGGCTTTAGTGAGAAAGGGGTGACTTTCTGACGGAGG AGGCGTTATGTTGGTGAAGTCGCGTACTGGAGGGCTGGTGGTTTTGATGTGCGTTTGTAAAAACGCATAAACACAGATCT GTAGCAAAACTTGCGTTCCAGCGAAAGCGATAAATTTGAGCGGTGGGTGTTGGGCGTTGGCGTTTGCACACATCTGTTCG CATACCTCTGTGTAGCTTTTCGTATGATTTGGGGTGGCAAATTCATTATTGTTCTGTTGAGAATTGTAGGAGAGGGGCCT CTCTTCACGTGGATTTATTTTTCATCTTGATTCAGTCTGTTTCAATTCAGTTCGCTTGATTCAATTCAGTTCTAGCACAT TTTCCATGTATCATGCTTGATTCAATTATGTTTCAATTGGATTTGGTTGAAGGAAAGGGAAAAATTGGTTTTTGTTTCTT TTTGTTTTTGGATTTCTTGATGCTTCTTTATTTGTTTCCAGATTTTGTGTTGTTGATTAATTGGAGATTAATATGAAGGA GGATTAGATATTAATGATTTAATAAAATTAAGATAAATAAGTTAATATTTTTTTATTTTTAGACTTTAAACAATTTTTTT TTTAAAAATTAATTAGTTTTTTTTAATTTAAATGAAAAAACAAATTACACATCAGCTTATTAATCCCATGTGGTAATGTC ACATGGGCCACCGGAGCTCCGGCGTTGACCCTGAGCTCCGGAGGGATGAAAACCAAACGTTTTGGTAAAGGTTAGGGACT AAAGCCCACCTTTGCTCCGGCGAGGGACGAAAACCAGGTATTATGTAAAGGTTAGGGACGAAAAATTTAAGCCGTAAGTT TATGCATATTGTGATTTAACTTCAAGTCACATGCAAACAATAACCATATGCATTGTCAATCACAAATTCTACCTGAAGTT GTAAGCTATTAGGTAAGGATCATAAATGATTTAATATCTAACACACTCTATCTTGCAATTGGCCTTTGGGAATGACAATG ATCGAATTCTTGATACTAGATCATCTACACTCTGATTACATGTCAATTACAATCTCTCCCAAAAGATTAAGACACTAAGT AAAGGCTTGTCAATAGTTTTATATCTATAATATACAAAGTACTGTACTCTTAATTTAGTTGATCTACTATTCTTTCTTAG GTTGAAAAGAAACTAACTCATATCTTCAGATTTCATATGAACCTTTAATTATAGTGAAACTAACTCGTATTCTTCGGATT TTCTGGGACTAATGCCTAAATTTTACCATTACGATTGCCCGTGGCATGCTAACTTGTTTCTCTAGTCAACAACAACAAAC CCGTTACCCAACTAAGTTTTGGATTCTTTTCTTTGGACTAACTTGTATCTCTGCATTTCAAACCATGTGTTCCTAAACAA TAGTATCATCATTTATTTTAAGTTGATTTTTCTGGCATCTTTATCTTTTGGATAACTTACATAGTTGAGTTAATTGCTCT TCACAATTTACCAAATGGTTTTTCAGGTAATCCATGAAAAGGGCAGTGACATAATCATAGTGGGTCGCGGCATCATCAAG GCAGAAAATCCGGCTGAGGCAGCCCGCAAATATCGTCTTCAAGGATGGAGTTCATATATAGCCAAGTGCAGCTAA
CDS sequence (LotjaGi3g1v0320200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCTCTCAAATTCGGCAACTTTAAGCTTAAATCAGGCATCTCCTC ACCAATCTACATAGACCTTCGCCTAATTGTATCTTACCCATCTGTCCTGCGGCAAATTTCTCAAACTATGATCTCCTCTG TCTCCTCCACTTCATTTGACCTTGTCTGTGGTGTTCCTTACACTGCTCTGCCCATTGCTACTTGTGCCTCTGTCACTCAC AACATCCCGATGGTCATGCGCCGCAAGGAAATCAAAGAGTATGGCACATCTAAAGCCATTGAAGGTGATTTCAAGCATGG CCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGCGGCACGTCGGTTTTGGAAACTGCTGCGCCGCTGCGTGCTACGG GGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAG CTGCATGCTATTCTTAAGTTGACTGAAATGGTGAAGATTTTGAAGGAAAAAGGAAAGCTTGATCAAGAGATGGTAGGGGT TGTTATGAGATTCTTAGAGGAAAATCAGAAGGTTGCTGCTTTGGCAATTAAAGCTAAGGTCAAGGCATTGCCATATTTGA AGAGGGCTAATTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAAAGTAATCTGTGTTTG GCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACATGGTTGGGCCTGAGATATGCTTGCTGAAAACTCA TGTGGATATTCTTCCAGATTTTACTCCTGATTTTGGTTCTAAGCTTCGCAAGATTGCAGAAAAACACAACTTTTTAATCT TTGAGGACCGTAAATTTGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTATCATATATTGGATTGG GCTGATATAGTGAATGCTCATATAATCTCTGGTCCTGGAATTGTGGATGGACTAAAATTGAAGGGTTTGCCTCGCGGAAG GGGTCTGTTGCTGCTCGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCAATGCTGCAGTGAAAATTG CTGAGGATCACTCTGACTTTGTTATTGGCTTTATCTCAGTCAATCCAGCATCATGGCCCGGGGCACCCATAAATTCCTGT TTCATCCATGCCACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGGCAGCAATATAATACTCCATATTCTGT AATCCATGAAAAGGGCAGTGACATAATCATAGTGGGTCGCGGCATCATCAAGGCAGAAAATCCGGCTGAGGCAGCCCGCA AATATCGTCTTCAAGGATGGAGTTCATATATAGCCAAGTGCAGCTAA
Protein sequence (LotjaGi3g1v0320200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESLVLQLHEISALKFGNFKLKSGISSPIYIDLRLIVSYPSVLRQISQTMISSVSSTSFDLVCGVPYTALPIATCASVTH NIPMVMRRKEIKEYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIK LHAILKLTEMVKILKEKGKLDQEMVGVVMRFLEENQKVAALAIKAKVKALPYLKRANLSKNPTGKRLFEIMAEKESNLCL AADVGTAAELLEIADMVGPEICLLKTHVDILPDFTPDFGSKLRKIAEKHNFLIFEDRKFADIGNTVTMQYEGGIYHILDW ADIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTNAAVKIAEDHSDFVIGFISVNPASWPGAPINSC FIHATPGVQMVTGGDALGQQYNTPYSVIHEKGSDIIIVGRGIIKAENPAEAARKYRLQGWSSYIAKCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 468 | 468 | 0.0 | – | |
| Hamap | 1 | 224 | 224 | 21.328 | ||
| Gene3D | 1 | 206 | 206 | 1.8E-64 | ||
| PANTHER | 1 | 468 | 468 | 0.0 | – | |
| SUPERFAMILY | 3 | 191 | 189 | 1.42E-42 | ||
| TIGRFAM | 8 | 169 | 162 | 1.5E-42 | ||
| Pfam | 49 | 152 | 104 | 6.6E-9 | ||
| CDD | 59 | 166 | 108 | 1.0952E-17 | ||
| Gene3D | 207 | 468 | 262 | 7.4E-94 | ||
| SUPERFAMILY | 210 | 463 | 254 | 4.71E-56 | ||
| Pfam | 236 | 455 | 220 | 6.0E-74 | ||
| SMART | 237 | 455 | 219 | 9.9E-35 | ||
| CDD | 238 | 455 | 218 | 2.01894E-50 | – | |
| TIGRFAM | 238 | 456 | 219 | 3.0E-55 | ||
| ProSitePatterns | 293 | 306 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Orotate phosphoribosyltransferase activity | Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate. | ||
| Molecular function | Orotidine-5'-phosphate decarboxylase activity | Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP. | ||
| Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | 'de novo' UMP biosynthetic process | The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen. |
Expression pattern of LotjaGi3g1v0320200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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