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LotjaGi3g1v0370300.6

Overview

Field Value
Gene ID LotjaGi3g1v0370300
Transcript ID LotjaGi3g1v0370300.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1MJ86|I1MJ86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:75902347..75905517) extracted from Lotus japonicus Gifu genome v1.2.

CCACCTCAATCTTTAGCTACTCCACTTCTCCGCATCATGAATACTCTTATTTCGTTTCTGAACTTTCTTTATCTTTTCTG CTTCTGAATTCGCTAATGTCTAGAACATGTTAAGTTTTTAGTCACTGTTTTTAGCTAAATCTAGTGTTTTGATGTTGTTT CAGTTCTAGCAGACCCATTTTTCTGTGGACAACAAACACTAGTCAAAATGGTAAGTTGAATCGACCTTGCTCCTTGATTT TTTGTTTGTTTAATTTGGTTGGATGTTCGTAATCTGAATTGAGATTTGTGTCTTTTTACAGGTGAAGTTCACCGCCGAGG AGCTTCGCCGTATTATGGACCTTAAGCACAACATTCGTAACATGTCTGTCATTGCTCATGTTGATCATGGTAAGAACTAA CATAGGTTTTTGTTTTTTGTTTTCTGGTTACTTTCTCTGTGATGCACTTTCCTGATTGTTGTGATGTGTTCTCTTACTCT ATATTTAAGAAGATATAATTGTTTTTTGGTGTTTGGTTGACAAGAAATTATTAGGGTTATATATCTTTTGAGAAGTTCCC TTGTGTCTTTTTTATTTAGTTCAGTTATCTTTTATGTACCTATGACATTAACAATGGTTTGTGATGCAATTGTTTAGCTG TGTATCTGGGTGCATTGTATTTTGTCATATTAGAATATCTTCGATTTTCTGGTCTGAATAATGAATTGTTCTTTTGGTTT CTTATTGCAGGGAAATCAACTCTCACTGATTCTCTTGTAGCTGCTGCTGGCATTATTGCACAAGAAGTAGCGGGTGATGT CCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCCACTGGTATCTCACTCTACTATGAAA TGACTGATGAGGCTCTCCAGAGTTTTAAGGGGGAGAGATCGGGCAATGAGTATCTCATTAATCTCATTGACTCACCTGGG CATGTGGACTTTTCATCTGAGGTTACTGCTGCACTTCGAATTACGGATGGAGCGCTGGTTGTGGTGGACTGTGTCGAAGG TGTCTGTGTCCAAACTGAAACTGTGCTTCGACAGGCCTTGGGAGAAAGGATTAGACCTGTTCTGACAGTCAATAAGATGG ACAGGTGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCATATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTG ATCATGGCTACATATGAAGACCCACTGCTTGGTGATTGTATGGTCTATCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGG TCTGCATGGCTGGGCTTTTACTCTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGA TGGAAAGGCTCTGGGGTGAGAATTTTTTTGATCCAGCCACAAAGAAATGGACCAGCAAGAATACTGGTTCACCTACCTGC AAGCGAGGGTTCGTTCAGTTCTGCTATGAGCCTATCAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCT CTGGCCTATGCTGCAAAAGCTAGGGGTCACCATGAAATCTGAAGAGAAGGACTTGATGGGTAAACCATTGATGAAACGTG TCATGCAGACATGGCTCCCAGCAGCTACTGCACTCTTGGAAATGATGATCTTTCATCTTCCATCTCCATCAACGGCCCAA AAGTATCGTGTTGAGAATTTGTACGAGGGTCCCCTTGATGATCAATATGCAGCTGCTATCAGAAACTGTGATCCTGAGGG ACCTCTGATGCTTTATGTCTCCAAGATGATTCCTGCATCTGATAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTG GTAAGATTTCAACTGGTTTGAAAGTCAGGATTATGGGACCAAATTATGTTCCTGGGGAGAAAAAAGACCTGTATACGAAA AGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTT GGTTGGGCTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCCCACCCAATTCGTGCTA TGAAGTTTTCTGTCTCACCTGTTGTCCGTGTCGCTGTTCAGTGTAAGTTTGCATCTGATCTTCCTAAGCTTGTTGAAGGT CTTAAGCGGTTGGCTAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACATATTGTTGCTGGTGCAGG AGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAAGACGATTTCATGGGTGGAGCTGAGATTACTAAATCTGACCCTG TAGTGTCTTTCCGAGAGACAGTTCTGGATAGATCATGCCGCACTGTGATGAGCAAATCACCCAACAAGCACAACCGTCTG TACATGGAAGCAAGACCACTGGAGGACGGGCTTGCTGAAGCCATTGATGATGGCAAGATTGGACCGAGGGATGACCCCAA AGTTCGTTCCAAAATCTTGTCTGAAGAATATGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGA CCCTTGGACCAAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAATGAAATCAAGGATTCTGTCGTTGCCGGC TTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCTGAGGAAAACATGAGAGCCATTTGCTTTGAAGTATGTGATGTTGTCCT GCATGCCGATGCCATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTCTTCTATGCTTCACAGTTGACTG CGAAACCCAGACTTCTTGAGCCTGTTTACCTGGTGGAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTT CTTAACCAGAAACGTGGACATGTCTTTGAGGAAATGCAGAGGCCTGGTACCCCACTTTACAACATCAAAGCATACCTCCC TGTTGTCGAGTCCTTCGGATTCTCCAGCACTTTGAGGGCCGCAACATCAGGCCAGGCTTTCCCACAGTGTGTCTTTGATC ACTGGGATATGATGTCCTCAGATCCATTGGAGCCTGGATCAGGAGCTGCACAGCTTGTTGCTGACATTCGTAGGAGGAAG GGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTTTGAAGACAAGCTTTAA 

CDS sequence (LotjaGi3g1v0370300.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACCTTAAGCACAACATTCGTAACATGTCTGTCATTGCTCATGTTGATCATGGGAAATCAACTCTCACTGATTCTCT TGTAGCTGCTGCTGGCATTATTGCACAAGAAGTAGCGGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGC GTGGTATTACAATTAAGTCCACTGGTATCTCACTCTACTATGAAATGACTGATGAGGCTCTCCAGAGTTTTAAGGGGGAG AGATCGGGCAATGAGTATCTCATTAATCTCATTGACTCACCTGGGCATGTGGACTTTTCATCTGAGGTTACTGCTGCACT TCGAATTACGGATGGAGCGCTGGTTGTGGTGGACTGTGTCGAAGGTGTCTGTGTCCAAACTGAAACTGTGCTTCGACAGG CCTTGGGAGAAAGGATTAGACCTGTTCTGACAGTCAATAAGATGGACAGGTGCTTCCTTGAATTGCAGGTGGATGGAGAG GAGGCATATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAAGACCCACTGCTTGGTGA TTGTATGGTCTATCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGGTCTGCATGGCTGGGCTTTTACTCTGACAAACTTTG CAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAATTTTTTTGATCCA GCCACAAAGAAATGGACCAGCAAGAATACTGGTTCACCTACCTGCAAGCGAGGGTTCGTTCAGTTCTGCTATGAGCCTAT CAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCTCTGGCCTATGCTGCAAAAGCTAGGGGTCACCATGA AATCTGAAGAGAAGGACTTGATGGGTAAACCATTGATGAAACGTGTCATGCAGACATGGCTCCCAGCAGCTACTGCACTC TTGGAAATGATGATCTTTCATCTTCCATCTCCATCAACGGCCCAAAAGTATCGTGTTGAGAATTTGTACGAGGGTCCCCT TGATGATCAATATGCAGCTGCTATCAGAAACTGTGATCCTGAGGGACCTCTGATGCTTTATGTCTCCAAGATGATTCCTG CATCTGATAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTGGTAAGATTTCAACTGGTTTGAAAGTCAGGATTATG GGACCAAATTATGTTCCTGGGGAGAAAAAAGACCTGTATACGAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAA ACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTTGGTTGGGCTGGATCAATTTATCACCAAGAATGCTA CATTGACAAATGAGAAGGAAGTTGATGCCCACCCAATTCGTGCTATGAAGTTTTCTGTCTCACCTGTTGTCCGTGTCGCT GTTCAGTGTAAGTTTGCATCTGATCTTCCTAAGCTTGTTGAAGGTCTTAAGCGGTTGGCTAAGTCAGATCCTATGGTTGT TTGTACTATTGAGGAGTCTGGAGAACATATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGC AAGACGATTTCATGGGTGGAGCTGAGATTACTAAATCTGACCCTGTAGTGTCTTTCCGAGAGACAGTTCTGGATAGATCA TGCCGCACTGTGATGAGCAAATCACCCAACAAGCACAACCGTCTGTACATGGAAGCAAGACCACTGGAGGACGGGCTTGC TGAAGCCATTGATGATGGCAAGATTGGACCGAGGGATGACCCCAAAGTTCGTTCCAAAATCTTGTCTGAAGAATATGGTT GGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGACCCTTGGACCAAACATGGTGGTTGATATGTGTAAG GGAGTCCAGTATTTGAATGAAATCAAGGATTCTGTCGTTGCCGGCTTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCTGA GGAAAACATGAGAGCCATTTGCTTTGAAGTATGTGATGTTGTCCTGCATGCCGATGCCATCCACAGAGGTGGTGGTCAGA TCATTCCTACAGCTAGGAGAGTCTTCTATGCTTCACAGTTGACTGCGAAACCCAGACTTCTTGAGCCTGTTTACCTGGTG GAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTTCTTAACCAGAAACGTGGACATGTCTTTGAGGAAAT GCAGAGGCCTGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTTGTCGAGTCCTTCGGATTCTCCAGCACTTTGA GGGCCGCAACATCAGGCCAGGCTTTCCCACAGTGTGTCTTTGATCACTGGGATATGATGTCCTCAGATCCATTGGAGCCT GGATCAGGAGCTGCACAGCTTGTTGCTGACATTCGTAGGAGGAAGGGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTT TGAAGACAAGCTTTAA 

Protein sequence (LotjaGi3g1v0370300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDEALQSFKGE RSGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE EAYQTFSRVIENANVIMATYEDPLLGDCMVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP ATKKWTSKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKPLMKRVMQTWLPAATAL LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAAAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKISTGLKVRIM GPNYVPGEKKDLYTKSVQRTVIWMGKKQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVA VQCKFASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEITKSDPVVSFRETVLDRS CRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETLGPNMVVDMCK GVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLV EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP GSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 831 831 0.0
PANTHER 1 831 831 0.0
Gene3D 1 330 330 5.9E-188
SUPERFAMILY 2 329 328 1.26E-105
ProSiteProfiles 5 332 328 53.547
Pfam 5 330 326 1.7E-64
TIGRFAM 8 164 157 8.8E-17
CDD 8 218 211 3.96068E-123
PRINTS 9 22 14 3.7E-14
ProSitePatterns 46 61 16 -
PRINTS 53 61 9 3.7E-14
Gene3D 55 457 403 5.9E-188
PRINTS 89 99 11 3.7E-14
PRINTS 105 116 12 3.7E-14
PRINTS 141 150 10 3.7E-14
Gene3D 210 314 105 5.9E-188
SUPERFAMILY 330 464 135 4.86E-41
CDD 363 458 96 1.01836E-42
Pfam 382 455 74 4.0E-10
SUPERFAMILY 472 548 77 6.12E-18
Gene3D 473 551 79 2.8E-32
Pfam 475 537 63 1.1E-11
CDD 475 547 73 1.93925E-37
CDD 547 719 173 9.47178E-100
SUPERFAMILY 550 714 165 4.3E-65
Gene3D 553 817 265 5.8E-123
Gene3D 559 821 263 5.8E-123
SMART 593 710 118 5.1E-25
Pfam 598 710 113 7.8E-30
SMART 712 801 90 3.2E-18
Pfam 712 798 87 2.7E-20
SUPERFAMILY 715 826 112 1.25E-30
CDD 715 793 79 1.13283E-48

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0370300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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