Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0370300 |
Transcript ID | LotjaGi3g1v0370300.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1MJ86|I1MJ86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0370300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75902347..75905517) extracted from Lotus japonicus Gifu genome v1.2.
CCACCTCAATCTTTAGCTACTCCACTTCTCCGCATCATGAATACTCTTATTTCGTTTCTGAACTTTCTTTATCTTTTCTG CTTCTGAATTCGCTAATGTCTAGAACATGTTAAGTTTTTAGTCACTGTTTTTAGCTAAATCTAGTGTTTTGATGTTGTTT CAGTTCTAGCAGACCCATTTTTCTGTGGACAACAAACACTAGTCAAAATGGTAAGTTGAATCGACCTTGCTCCTTGATTT TTTGTTTGTTTAATTTGGTTGGATGTTCGTAATCTGAATTGAGATTTGTGTCTTTTTACAGGTGAAGTTCACCGCCGAGG AGCTTCGCCGTATTATGGACCTTAAGCACAACATTCGTAACATGTCTGTCATTGCTCATGTTGATCATGGTAAGAACTAA CATAGGTTTTTGTTTTTTGTTTTCTGGTTACTTTCTCTGTGATGCACTTTCCTGATTGTTGTGATGTGTTCTCTTACTCT ATATTTAAGAAGATATAATTGTTTTTTGGTGTTTGGTTGACAAGAAATTATTAGGGTTATATATCTTTTGAGAAGTTCCC TTGTGTCTTTTTTATTTAGTTCAGTTATCTTTTATGTACCTATGACATTAACAATGGTTTGTGATGCAATTGTTTAGCTG TGTATCTGGGTGCATTGTATTTTGTCATATTAGAATATCTTCGATTTTCTGGTCTGAATAATGAATTGTTCTTTTGGTTT CTTATTGCAGGGAAATCAACTCTCACTGATTCTCTTGTAGCTGCTGCTGGCATTATTGCACAAGAAGTAGCGGGTGATGT CCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCCACTGGTATCTCACTCTACTATGAAA TGACTGATGAGGCTCTCCAGAGTTTTAAGGGGGAGAGATCGGGCAATGAGTATCTCATTAATCTCATTGACTCACCTGGG CATGTGGACTTTTCATCTGAGGTTACTGCTGCACTTCGAATTACGGATGGAGCGCTGGTTGTGGTGGACTGTGTCGAAGG TGTCTGTGTCCAAACTGAAACTGTGCTTCGACAGGCCTTGGGAGAAAGGATTAGACCTGTTCTGACAGTCAATAAGATGG ACAGGTGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCATATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTG ATCATGGCTACATATGAAGACCCACTGCTTGGTGATTGTATGGTCTATCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGG TCTGCATGGCTGGGCTTTTACTCTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGA TGGAAAGGCTCTGGGGTGAGAATTTTTTTGATCCAGCCACAAAGAAATGGACCAGCAAGAATACTGGTTCACCTACCTGC AAGCGAGGGTTCGTTCAGTTCTGCTATGAGCCTATCAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCT CTGGCCTATGCTGCAAAAGCTAGGGGTCACCATGAAATCTGAAGAGAAGGACTTGATGGGTAAACCATTGATGAAACGTG TCATGCAGACATGGCTCCCAGCAGCTACTGCACTCTTGGAAATGATGATCTTTCATCTTCCATCTCCATCAACGGCCCAA AAGTATCGTGTTGAGAATTTGTACGAGGGTCCCCTTGATGATCAATATGCAGCTGCTATCAGAAACTGTGATCCTGAGGG ACCTCTGATGCTTTATGTCTCCAAGATGATTCCTGCATCTGATAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTG GTAAGATTTCAACTGGTTTGAAAGTCAGGATTATGGGACCAAATTATGTTCCTGGGGAGAAAAAAGACCTGTATACGAAA AGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTT GGTTGGGCTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCCCACCCAATTCGTGCTA TGAAGTTTTCTGTCTCACCTGTTGTCCGTGTCGCTGTTCAGTGTAAGTTTGCATCTGATCTTCCTAAGCTTGTTGAAGGT CTTAAGCGGTTGGCTAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACATATTGTTGCTGGTGCAGG AGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAAGACGATTTCATGGGTGGAGCTGAGATTACTAAATCTGACCCTG TAGTGTCTTTCCGAGAGACAGTTCTGGATAGATCATGCCGCACTGTGATGAGCAAATCACCCAACAAGCACAACCGTCTG TACATGGAAGCAAGACCACTGGAGGACGGGCTTGCTGAAGCCATTGATGATGGCAAGATTGGACCGAGGGATGACCCCAA AGTTCGTTCCAAAATCTTGTCTGAAGAATATGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGA CCCTTGGACCAAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAATGAAATCAAGGATTCTGTCGTTGCCGGC TTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCTGAGGAAAACATGAGAGCCATTTGCTTTGAAGTATGTGATGTTGTCCT GCATGCCGATGCCATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTCTTCTATGCTTCACAGTTGACTG CGAAACCCAGACTTCTTGAGCCTGTTTACCTGGTGGAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTT CTTAACCAGAAACGTGGACATGTCTTTGAGGAAATGCAGAGGCCTGGTACCCCACTTTACAACATCAAAGCATACCTCCC TGTTGTCGAGTCCTTCGGATTCTCCAGCACTTTGAGGGCCGCAACATCAGGCCAGGCTTTCCCACAGTGTGTCTTTGATC ACTGGGATATGATGTCCTCAGATCCATTGGAGCCTGGATCAGGAGCTGCACAGCTTGTTGCTGACATTCGTAGGAGGAAG GGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTTTGAAGACAAGCTTTAA
CDS sequence (LotjaGi3g1v0370300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTTAAGCACAACATTCGTAACATGTCTGTCATTGCTCATGTTGATCATGGGAAATCAACTCTCACTGATTCTCT TGTAGCTGCTGCTGGCATTATTGCACAAGAAGTAGCGGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGC GTGGTATTACAATTAAGTCCACTGGTATCTCACTCTACTATGAAATGACTGATGAGGCTCTCCAGAGTTTTAAGGGGGAG AGATCGGGCAATGAGTATCTCATTAATCTCATTGACTCACCTGGGCATGTGGACTTTTCATCTGAGGTTACTGCTGCACT TCGAATTACGGATGGAGCGCTGGTTGTGGTGGACTGTGTCGAAGGTGTCTGTGTCCAAACTGAAACTGTGCTTCGACAGG CCTTGGGAGAAAGGATTAGACCTGTTCTGACAGTCAATAAGATGGACAGGTGCTTCCTTGAATTGCAGGTGGATGGAGAG GAGGCATATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAAGACCCACTGCTTGGTGA TTGTATGGTCTATCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGGTCTGCATGGCTGGGCTTTTACTCTGACAAACTTTG CAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAATTTTTTTGATCCA GCCACAAAGAAATGGACCAGCAAGAATACTGGTTCACCTACCTGCAAGCGAGGGTTCGTTCAGTTCTGCTATGAGCCTAT CAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCTCTGGCCTATGCTGCAAAAGCTAGGGGTCACCATGA AATCTGAAGAGAAGGACTTGATGGGTAAACCATTGATGAAACGTGTCATGCAGACATGGCTCCCAGCAGCTACTGCACTC TTGGAAATGATGATCTTTCATCTTCCATCTCCATCAACGGCCCAAAAGTATCGTGTTGAGAATTTGTACGAGGGTCCCCT TGATGATCAATATGCAGCTGCTATCAGAAACTGTGATCCTGAGGGACCTCTGATGCTTTATGTCTCCAAGATGATTCCTG CATCTGATAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTGGTAAGATTTCAACTGGTTTGAAAGTCAGGATTATG GGACCAAATTATGTTCCTGGGGAGAAAAAAGACCTGTATACGAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAA ACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTTGGTTGGGCTGGATCAATTTATCACCAAGAATGCTA CATTGACAAATGAGAAGGAAGTTGATGCCCACCCAATTCGTGCTATGAAGTTTTCTGTCTCACCTGTTGTCCGTGTCGCT GTTCAGTGTAAGTTTGCATCTGATCTTCCTAAGCTTGTTGAAGGTCTTAAGCGGTTGGCTAAGTCAGATCCTATGGTTGT TTGTACTATTGAGGAGTCTGGAGAACATATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGC AAGACGATTTCATGGGTGGAGCTGAGATTACTAAATCTGACCCTGTAGTGTCTTTCCGAGAGACAGTTCTGGATAGATCA TGCCGCACTGTGATGAGCAAATCACCCAACAAGCACAACCGTCTGTACATGGAAGCAAGACCACTGGAGGACGGGCTTGC TGAAGCCATTGATGATGGCAAGATTGGACCGAGGGATGACCCCAAAGTTCGTTCCAAAATCTTGTCTGAAGAATATGGTT GGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGACCCTTGGACCAAACATGGTGGTTGATATGTGTAAG GGAGTCCAGTATTTGAATGAAATCAAGGATTCTGTCGTTGCCGGCTTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCTGA GGAAAACATGAGAGCCATTTGCTTTGAAGTATGTGATGTTGTCCTGCATGCCGATGCCATCCACAGAGGTGGTGGTCAGA TCATTCCTACAGCTAGGAGAGTCTTCTATGCTTCACAGTTGACTGCGAAACCCAGACTTCTTGAGCCTGTTTACCTGGTG GAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTTCTTAACCAGAAACGTGGACATGTCTTTGAGGAAAT GCAGAGGCCTGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTTGTCGAGTCCTTCGGATTCTCCAGCACTTTGA GGGCCGCAACATCAGGCCAGGCTTTCCCACAGTGTGTCTTTGATCACTGGGATATGATGTCCTCAGATCCATTGGAGCCT GGATCAGGAGCTGCACAGCTTGTTGCTGACATTCGTAGGAGGAAGGGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTT TGAAGACAAGCTTTAA
Protein sequence (LotjaGi3g1v0370300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDEALQSFKGE RSGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE EAYQTFSRVIENANVIMATYEDPLLGDCMVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP ATKKWTSKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKPLMKRVMQTWLPAATAL LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAAAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKISTGLKVRIM GPNYVPGEKKDLYTKSVQRTVIWMGKKQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVA VQCKFASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEITKSDPVVSFRETVLDRS CRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETLGPNMVVDMCK GVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLV EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP GSGAAQLVADIRRRKGLKEQMTPLSEFEDKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 831 | 831 | 0.0 | – | |
PANTHER | 1 | 831 | 831 | 0.0 | – | |
Gene3D | 1 | 330 | 330 | 5.9E-188 | – | |
SUPERFAMILY | 2 | 329 | 328 | 1.26E-105 | ||
ProSiteProfiles | 5 | 332 | 328 | 53.547 | ||
Pfam | 5 | 330 | 326 | 1.7E-64 | ||
TIGRFAM | 8 | 164 | 157 | 8.8E-17 | ||
CDD | 8 | 218 | 211 | 3.96068E-123 | – | |
PRINTS | 9 | 22 | 14 | 3.7E-14 | ||
ProSitePatterns | 46 | 61 | 16 | - | ||
PRINTS | 53 | 61 | 9 | 3.7E-14 | ||
Gene3D | 55 | 457 | 403 | 5.9E-188 | – | |
PRINTS | 89 | 99 | 11 | 3.7E-14 | ||
PRINTS | 105 | 116 | 12 | 3.7E-14 | ||
PRINTS | 141 | 150 | 10 | 3.7E-14 | ||
Gene3D | 210 | 314 | 105 | 5.9E-188 | – | |
SUPERFAMILY | 330 | 464 | 135 | 4.86E-41 | ||
CDD | 363 | 458 | 96 | 1.01836E-42 | – | |
Pfam | 382 | 455 | 74 | 4.0E-10 | ||
SUPERFAMILY | 472 | 548 | 77 | 6.12E-18 | ||
Gene3D | 473 | 551 | 79 | 2.8E-32 | – | |
Pfam | 475 | 537 | 63 | 1.1E-11 | ||
CDD | 475 | 547 | 73 | 1.93925E-37 | – | |
CDD | 547 | 719 | 173 | 9.47178E-100 | – | |
SUPERFAMILY | 550 | 714 | 165 | 4.3E-65 | ||
Gene3D | 553 | 817 | 265 | 5.8E-123 | – | |
Gene3D | 559 | 821 | 263 | 5.8E-123 | ||
SMART | 593 | 710 | 118 | 5.1E-25 | ||
Pfam | 598 | 710 | 113 | 7.8E-30 | ||
SMART | 712 | 801 | 90 | 3.2E-18 | ||
Pfam | 712 | 798 | 87 | 2.7E-20 | ||
SUPERFAMILY | 715 | 826 | 112 | 1.25E-30 | ||
CDD | 715 | 793 | 79 | 1.13283E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0370300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…