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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470700 |
| Transcript ID | LotjaGi3g1v0470700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ, putative; TAIR: AT5G22060.1 DNAJ homologue 2; Swiss-Prot: sp|Q04960|DNJH_CUCSA DnaJ protein homolog; TrEMBL-Plants: tr|A0A0D2PQJ2|A0A0D2PQJ2_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0470700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88617839..88621131) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACACTTTCGTTTCCTCACCTAAACTAGAAAGAAAATAAACCTTTTGACCAAAAAACTCAAAATAAAAATTCTAGAT CCTTCTTACGCGGGCCCCATACTTCGAAACTCAATCACAACCGTCAATAAAATCCTAATCTGAATCAAAATTTATTTATT ATTTAAGAGAAAATATAAATAACTTTGATTTTGTTCCACTTCATTCTCCTCTTCTGTTCTCGGTTTCGGATCTAGTGTTG TTCCATCTTCGAACAACTAGGGTTTCCGAATTCCGATCAATCGGCGCGGCGAAGATGTTTGGCAGAGCGCCGCCGAAGAA GAGTGACAGCACCAGGTACTACGACATCTTGGGTGTCTCCAAGACCGCTTCTCAAGATGATTTGAAGAAAGCTTACAAGA AAGCCGCCATTAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTTGCTAATCTCATCTTAATTTTCTTCGTTTTT TAGTATTATTTTTGATTAATTGTTTGTTTTAGGGTTGATTAATTATCTTAATTGTTTGATTTGGGGTTTTGTGGTTAATT TAGATTGCAAAAGGGGTTTTGTGGTTTTGTCGATATTTTGACTGATTTAGGGTTGAAATTTGTCGAAAAATTGGAAATTT TGTTAGTTTGTGGGGAGAATTTGTGGTGGGGTTTGGAGTAGTGTGGTACTGTGTTGCTGAATTACTTTGAGTTGTGCTGT ATAGAAGTTGGAATTCATAGTTTCATTCTGATAATGTAGTGGTAGGGAGTGGTGAGATTGCAAAAGCTAGTAAGGTGAGG CTTGAGGTTGACATGTTTTCTATCTAATTGATGGTTTTTTTATTTGGGGTGTAGTTCAAGGAGTTGGCACAAGCTTATGA GGTTCTGAATGACCCTGAGAAGCGCGAGATATATGATAATTATGGTGAAGATGCACTTAAGGAAGGAATGGGTGGTGGAG GAGGTGGGGGTCATGACCCGTTTGACATATTCTCATCTTTCTTTGGTGGGAGTCCCTTTTCATCAGGTGATTATTATTAA ACTAATGATTGGCTGTTTTTTGGATTTTGACTCGTTTCCATCACTTAATTGTTGTGTGGTTTGTTTAGCTTAAAGGGGTT TTTGGTTCATGTGAACAGGTGGTGGTGGTAGTCGAGGGCGGAGGCAGAGACGTGGAGAAGATGTTGTTTACCCTCTTAAG GTCTCTCTGGAGGACCTTTACCTCGGGGCAGCTAAGAAGCTTTCCCTCTCGAGAAATGTCTTATGCTCCAAGTGCAATGG GTGGGTTTTATAACAATTTTGGTTTTGTTGAAATTTTAGTGAAAAATTACCTTTGCAGTAAGTTTTTTTTTTTTATGATA TATGCGGTTCAAAACACAAATTAAACTTGTTCGAAATACTAGCAACATTCTTTTGAATACATTGTATACCACATTCTTCA TGAATGGTTTTTCTTTTTTTCTTTCAAAAATCCACACCTAAAAAACTGATCAAATTAAAAAGCGTATTGACTTTTTTTAA AGTGGATCAGTTATAGTGTCTTTTGTGTATTATTAATGTCTCTCTTTACTTTTTGCATAGCTTTTGCCCATTTTTAAGAC AGGATTACTTACATTACCGGTTGTGTTTTACTTGATTCCAGCAAAGGTTCCAAGTCCGGGGCCTCCCTGAAGTGTCCTGG TTGTCAAGGATCTGGCATGAAGGTTTCTATAAGACACATAGGTCCATCAATGATTCAGCAAATGCAGCATCCTTGCAATG AATGTAAGGGTACTGGAGAAACTATAAATGATAGGGACCGCTGCCCACAGTGCAAGGGTGATAAGGTTTCCCAAGAGAAG AAAGTACTTGAAGTTTTCGTGGAGAAGGGAATGCAGAACCAGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCAGT ACGTTGAAAGTTTTAGTGTCACTGACATTGAGTTTCATGAGTTATAGAGTTTAATATGACTGAGTTGTTTGTGTTTTACA GCCAGATACAACTACTGGGGATATCGTGTTTGTGCTTCAATTGAAGGAACACCCCAAATTCAAAAGAAAGGCTGAAGACC TCTTTGTGGAGCACACCCTGTCCCTCACTGAGGCTTTATGTGGCTTCCAATTTGTGCTCACTCACTTGGATGGTCGGCAG CTCCTGATCAAATCAAACCCTGGGGAAGTTGTAAAGCCTGGTATGTAAATGATGCACATCTGAGCTGTTTGTCCCTCAAT TTTGCTGTGTGATTAAAATGGCTATTTTATGTTGTGCTAAAAAATTGATTTTGGTGTGCATGTAGATTCATTTAAGGCCA TCAATGATGAGGGAATGCCGATGTACCAGAGGCCATTTATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAATTCCCT GATTCTCTAAATCCTAATCAGGTTAAGGATTTGGAGGCTGCTCTGCCAGCTAAACCTTCATCACAATTGACTGACATGGA GCTTGACGAGTGTGAGGAGACTACACTCCATGATGTCAATATGGAAGAGGAGAATAGGAGGAAAGAGCAGCAAGCTCAGC AGGAGGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAATGCGCCCAGCAGTGATGACTTTTGTAG CAGAAGTAAAATCAGAGAAGATCGTGCTAGTGTTTATGTTTTTTAGCCTTTATTTGATTCAAACATAAGTAGTATTTGAT AAGTGATTCTGAGAATGTGAACACTGTAATGCTTGCATTATATATTTATGTTGTCGATTGGATAATTTCCATTCTGGCAT CCTAAATACTTTATATAATTTGAATGTCATAACTGATTTTTGTTGTCTGCACCATTGTGCTAATTAATAATAGATACATG ATTTTTCAAGTGCTGTTAGGTTTTGTTCTTTTCAAGTTGTTAGCTTGGTTTAAGCAAATTCATGAGTGTCTCTGTAAGCT TAGTAGTATGCTCTTAATTAACCATCCAACCCAAATGCTACAACCCCATCTTAAACTTGCTAAGACAACCTCTGAGTAAG CCACATCGCGGCCACTGTATTTCTGCCATGCTGCTCCACTTCACCACTCCAACAACCAAGGCACAGTCCATAGAACCCAT ATCTCTACCACTCACACCATTTCACTTCACCATCGCGTGACCCTCCATGAAAACCCACATATAGCCCAACTAGCTGAAAA TAAAATGATAGAATGAGATTTAGACAATAACTAACCTCTAGACCATCTAATTATAAAGACATTTTTTGTTACACATGAAA AATAATTAAAAAG
CDS sequence (LotjaGi3g1v0470700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGCAGAGCGCCGCCGAAGAAGAGTGACAGCACCAGGTACTACGACATCTTGGGTGTCTCCAAGACCGCTTCTCA AGATGATTTGAAGAAAGCTTACAAGAAAGCCGCCATTAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGTTCAAGG AGTTGGCACAAGCTTATGAGGTTCTGAATGACCCTGAGAAGCGCGAGATATATGATAATTATGGTGAAGATGCACTTAAG GAAGGAATGGGTGGTGGAGGAGGTGGGGGTCATGACCCGTTTGACATATTCTCATCTTTCTTTGGTGGGAGTCCCTTTTC ATCAGGTGGTGGTGGTAGTCGAGGGCGGAGGCAGAGACGTGGAGAAGATGTTGTTTACCCTCTTAAGGTCTCTCTGGAGG ACCTTTACCTCGGGGCAGCTAAGAAGCTTTCCCTCTCGAGAAATGTCTTATGCTCCAAGTGCAATGGCAAAGGTTCCAAG TCCGGGGCCTCCCTGAAGTGTCCTGGTTGTCAAGGATCTGGCATGAAGGTTTCTATAAGACACATAGGTCCATCAATGAT TCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAAACTATAAATGATAGGGACCGCTGCCCACAGTGCA AGGGTGATAAGGTTTCCCAAGAGAAGAAAGTACTTGAAGTTTTCGTGGAGAAGGGAATGCAGAACCAGCAGAAGATTACA TTCCCTGGTGAAGCTGATGAAGCACCAGATACAACTACTGGGGATATCGTGTTTGTGCTTCAATTGAAGGAACACCCCAA ATTCAAAAGAAAGGCTGAAGACCTCTTTGTGGAGCACACCCTGTCCCTCACTGAGGCTTTATGTGGCTTCCAATTTGTGC TCACTCACTTGGATGGTCGGCAGCTCCTGATCAAATCAAACCCTGGGGAAGTTGTAAAGCCTGATTCATTTAAGGCCATC AATGATGAGGGAATGCCGATGTACCAGAGGCCATTTATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAATTCCCTGA TTCTCTAAATCCTAATCAGGTTAAGGATTTGGAGGCTGCTCTGCCAGCTAAACCTTCATCACAATTGACTGACATGGAGC TTGACGAGTGTGAGGAGACTACACTCCATGATGTCAATATGGAAGAGGAGAATAGGAGGAAAGAGCAGCAAGCTCAGCAG GAGGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAATGCGCCCAGCAGTGA
Protein sequence (LotjaGi3g1v0470700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGRAPPKKSDSTRYYDILGVSKTASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLNDPEKREIYDNYGEDALK EGMGGGGGGGHDPFDIFSSFFGGSPFSSGGGGSRGRRQRRGEDVVYPLKVSLEDLYLGAAKKLSLSRNVLCSKCNGKGSK SGASLKCPGCQGSGMKVSIRHIGPSMIQQMQHPCNECKGTGETINDRDRCPQCKGDKVSQEKKVLEVFVEKGMQNQQKIT FPGEADEAPDTTTGDIVFVLQLKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAI NDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPNQVKDLEAALPAKPSSQLTDMELDECEETTLHDVNMEEENRRKEQQAQQ EAYDEDDDMPGGAQRVQCAQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 421 | 421 | 2.5E-266 | – | |
| PANTHER | 1 | 421 | 421 | 2.5E-266 | – | |
| SUPERFAMILY | 10 | 112 | 103 | 1.14E-34 | ||
| Gene3D | 11 | 114 | 104 | 2.6E-29 | ||
| Hamap | 11 | 372 | 362 | 26.452 | ||
| SMART | 13 | 67 | 55 | 4.3E-26 | ||
| ProSiteProfiles | 14 | 75 | 62 | 22.67 | ||
| Pfam | 15 | 72 | 58 | 7.9E-22 | ||
| CDD | 15 | 64 | 50 | 3.49783E-10 | ||
| PRINTS | 16 | 34 | 19 | 1.8E-21 | ||
| PRINTS | 47 | 67 | 21 | 1.8E-21 | ||
| ProSitePatterns | 52 | 71 | 20 | - | ||
| PRINTS | 67 | 86 | 20 | 1.8E-21 | ||
| SUPERFAMILY | 117 | 275 | 159 | 6.15E-17 | ||
| CDD | 122 | 349 | 228 | 2.98885E-41 | – | |
| Pfam | 125 | 346 | 222 | 4.5E-38 | ||
| ProSiteProfiles | 138 | 222 | 85 | 23.972 | ||
| SUPERFAMILY | 148 | 219 | 72 | 3.27E-17 | ||
| Pfam | 151 | 217 | 67 | 1.9E-15 | ||
| CDD | 151 | 217 | 67 | 3.06285E-21 | ||
| Gene3D | 153 | 217 | 65 | 5.7E-22 | – | |
| Gene3D | 266 | 347 | 82 | 2.7E-25 | – | |
| SUPERFAMILY | 268 | 355 | 88 | 2.88E-19 | ||
| MobiDBLite | 380 | 421 | 42 | - | – | |
| MobiDBLite | 380 | 400 | 21 | - | – | |
| Coils | 386 | 406 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Biological process | Response to heat | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. | ||
| Molecular function | Heat shock protein binding | Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi3g1v0470700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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