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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0481300 |
| Transcript ID | LotjaGi3g1v0481300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89890802..89894631) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAACAGGCCCAGCCCCTTTTATTTATTTATATATATATATATATGCATAGGAAAATAAGATTATAAAGCACAAATT GTCAACAAATTCATCTTTTCTGAAGAAAAAAATTCAGAAAATCCAAAATTGAAAAAGAACCGTACGTTTATGCTAAAAAA TAGATCAAAAGACGTGTTTCTGGCGGTTTCTGCACAGTACTCAGTGTTTCTTCAAACACCGCCACGTTCGTAACCACCAC CACCACTTTTTCTTCTTCACCCACAAGCCAAGCTTGTACCTTTGTTTCAAAAACCACCTAAGAATCCCAAAGGGTATCTC ATTCTGATTCATGGAGGACCAGGCTCATTCCCAGAATTCCACCCTGCAGAACGGGTCAGAAATCAACAAGGAGCAAGTGG CGGCGGCGGCGGCCGCCGGAGGCGGCGGAAACACCGCACCAGAATCCGCCGTCGGAGAAGCGTCTGTGGCTGCAGGATCA GGACAGGTGGTGAAAAGGGGGAGGGGGAGGCCACGGAAAAACCAGGCTAATGGGAGCCACCCGCCGCCGGCGACGCCGCC GCAGCCGGAATTGGCTATTCAACTTTATGGAGGAGGTGATGTTGTCAAGCGAGGCAGGGGACGCCCTCGTGGTTCTGGGA AGCTGCAGATTCTGGCTTCCATTGGTAAGTTTCTTTCTTTTGACTTTGTGGTTGTATCTTTTGATGTTTTTCATGTTAGC TTAGAATGAATGTGCCTCTTTTGAAATCTTAGTTGGAAAGTTTTCCCCTTTTTTCAAACAAAAATAGCTTGGTTTAGATT ATTTTAACCTTGTTCAATCTCTTATTTTAAAATGAAAATTGTTTCTCTATTCTTAGGTTGAATTTGTTTGGAAATGTAAA GTTGAAGCAAATGATTCTTGAATAATTTCACTTCATAAATTCTTATCAATAAGATGCTTAAAGTGAATGGCATATGAGTA AAAAAATAAATAAACTCGTTATCTTGAGTCATTTACTCATTCCGTTTCTTTTTAACGATTTAGAAGAGAGGACTAAAAAA AACGATTTAGAAGTGAGAAAAAAAAAACACATATTAAGGTGTACTATTATCTATTCTTATTTATTCTTTTTATAAGGTCT TATTGGAAAATTGTCAATTAATACTCTCTTGATTTTTAAAAGGGAAATGATTTTTGACACTACTAATTTATTACACGACC ATGCACGATTGATTGTCCACTGTTAGATATATATGTAAAATCATAATTTTCTCACTCATATACCCAACATGATGTCTGTC AATGACTGAATATAATGGGTCGTGATAATCGTGCTAAAAAATTGCAGTGCCATGCCATATAGCAATATCATCTTTAAAAA AAATTCTATGTTGCCGGTCAAATAAGAAATTCTATGTTGACAAATATGTAATTGTTTTTCTTCTTCTAGACTTGTTTTTT TAGGGTTTAGGGTTAGGCCTTTGTCCAATCCAGAATGTTATAGAAATCCGAGACATGAATTTGTGTTTGATATCGTTTTG CACTTTTTTCTCATGCTTGAAGCATTATATGTTGCAGGGGGATTAGTCACTGAAACAGCCGGGGGAGGCTTCACTCCTCA TGTGGTGAATGTGAACACTGGGGAGGTAATATAAGACTCATACAAAAATTGTTCAAAATTAAAGTAATAGAATTTGTTTG AATGTTATTCTCAACTGAGATAGTTATGTTTTCGATCATTTTCAGGATGTGGTCAGCAAGATAATATCATTTTTTCAGAA AGGCCCTAGGGCAGTTTGTATACTTTCTGCTAATGGTCCTATATCAAGTGTCACCATTCGCCCACGTGGTGCTACTAATA TTTTGAGATATGAGGTACAATACAATGTAGAAACAATCTTCTATGTAATAGTTCACTTGAATTTTTCACTATCGTATGAT ATCTCAAAATATAATTATGTATAGTTATGTATGGTATGCACTAAAAAACAAGTATCCTAGGTCACTTAGTTGTATAGATC AAAAGGCAGTAGACATACCCCATTAACAGAGGTGTAGGCTGACCCATATGGGCTTATCCCAATAACCCAAGTTAAAGTGT GGGCTGTATTCTAGTAAAGTTCAAATCCAATTTAAACAGAAATAGATGTTTATTATTATTTTTTCTATTTTCATGTCTTT AATTTTTATGTATATGGTGGAAAATGATTAAACATTTCTAAAAATAAATGGCTCCTTGGTTGACTCGTTTAACCCTTAGA AGGTGGGGTGAACTGAAAATTAAAGAGTCCGTTTGAATTTCAGGACAACCAAATCTGACCCAAAAATGTGTCGGCCGACT GCAAACTTGTTGAATGGGTTGGGCCAACACTAGCCACTACATGATTCTATAGACACAACACCTTACCCTTTATTTATGCC GTTCCTATCCCTTTTTTCCTTCTTGCTTGTTAGTACTTTTTAGTTTCTTGTTATTTTCTTAATAAAAGTTCAACTTTGAA GCCACCTAAATTTTGCATGTCATGTATATAGATCATCATGTATAGATCAGCTCAAGATTTTGTGTGTGAATTTGTATTTA AATTAGTTTTAATTTTTGTATTTTATTCTGCTACATACAGGGTCACTTTGAAATTTTGTCCTTAATTGGATCATGGACCT CTTCTAGAGATGGGGGTGCATGTATGAAAAATAGTCAGTTAACTGTTTCATTGGCTAAACCCGATGGAACGGTTTTCGGC GGGAATGTTGAGAGCTCATTAATAGCGGCTGGCCCCATTCAAGTAAGAATAAATTTTTTGATGTATCCATTTAAGACGGG AATGACTTAGGTTTATCTATGTTTTCCTTCTAGTTGATATATATCCTTTTATTTCACTATAGCAAGTAATGTTATTGAAG CTTGAATGACCAATAGGCTTCAAAACATATTTGATAGGTGATTCAATCAATTACAAAAAATTAAGTCATAATAGTTATAT TCTGCACATGAACTTACCCATAACATGAACTTACCCATAACCTTAACTTTGCTTTTGGGGTAGGTTGTACCATGATCATT AGTAGAAACACAACTATATTTATATCCTAAAGGAGGAGTAAAATCAGATATCTACTTGCAGTATGTTACTTTTGTCCAAA AATAGATTGATCATTAATTCCTTGCATGTATACTTGACATGGGAGTTAAGTTTAGTTTGAAGTACTATATTTTACTTTTT ATTCATTATTATGTCGCACTGATCCTTCAATAACTATTATCAATCTTAACTCTGAGTTTCTCTTTGTCCACCAGCTTATA CTGGCCACTTTCAAACAAAACATTAGCAATCAAATTAAGAAAAGGCGCTCAAATGGATCATCCAATGTTCCAAGCATGGC AGGTAATCCAGATTCAACAAAAGTGGATCTCCAGAAAGTTCCTAAGTTGACAGAAGGCGAGTCCAGTTGTCCTTCACCAA CATCAACACTAAGGCTAATAGCACCAAGCAATGGCTTAGTTGATGATCCCATTACTGAAACAACAAATGCAGTGCCAGAA AATGTCACTATTGCAGACAAGAATATGCATTTTGAGTCAGTTAGTGGTGTTGACCTTGAATACCACTATGCAGTCTAATG CAGAACAAGATAGAACATTTGCATATGTTAATGATGCTAGTGCCTCTCAGATGTAGAAATTTATATAGACCCTTTCAAGC TTTTAGTTGCAAAGAACAAGTTTGTTTTTTCTTAGTTATGTTTACCTGAACATTTTTCTAGTGAGTCTTTAAAAGGGTAA AGTTGCTTACATTGTTTTCAAAGGTTCGAAAGAACTTGCTAGTAACATCACAACAATTAACTAAAAACCT
CDS sequence (LotjaGi3g1v0481300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACCAGGCTCATTCCCAGAATTCCACCCTGCAGAACGGGTCAGAAATCAACAAGGAGCAAGTGGCGGCGGCGGC GGCCGCCGGAGGCGGCGGAAACACCGCACCAGAATCCGCCGTCGGAGAAGCGTCTGTGGCTGCAGGATCAGGACAGGTGG TGAAAAGGGGGAGGGGGAGGCCACGGAAAAACCAGGCTAATGGGAGCCACCCGCCGCCGGCGACGCCGCCGCAGCCGGAA TTGGCTATTCAACTTTATGGAGGAGGTGATGTTGTCAAGCGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAGCTGCAGAT TCTGGCTTCCATTGGGGGATTAGTCACTGAAACAGCCGGGGGAGGCTTCACTCCTCATGTGGTGAATGTGAACACTGGGG AGGATGTGGTCAGCAAGATAATATCATTTTTTCAGAAAGGCCCTAGGGCAGTTTGTATACTTTCTGCTAATGGTCCTATA TCAAGTGTCACCATTCGCCCACGTGGTGCTACTAATATTTTGAGATATGAGGGTCACTTTGAAATTTTGTCCTTAATTGG ATCATGGACCTCTTCTAGAGATGGGGGTGCATGTATGAAAAATAGTCAGTTAACTGTTTCATTGGCTAAACCCGATGGAA CGGTTTTCGGCGGGAATGTTGAGAGCTCATTAATAGCGGCTGGCCCCATTCAACTTATACTGGCCACTTTCAAACAAAAC ATTAGCAATCAAATTAAGAAAAGGCGCTCAAATGGATCATCCAATGTTCCAAGCATGGCAGGTAATCCAGATTCAACAAA AGTGGATCTCCAGAAAGTTCCTAAGTTGACAGAAGGCGAGTCCAGTTGTCCTTCACCAACATCAACACTAAGGCTAATAG CACCAAGCAATGGCTTAGTTGATGATCCCATTACTGAAACAACAAATGCAGTGCCAGAAAATGTCACTATTGCAGACAAG AATATGCATTTTGAGTCAGTTAGTGGTGTTGACCTTGAATACCACTATGCAGTCTAA
Protein sequence (LotjaGi3g1v0481300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDQAHSQNSTLQNGSEINKEQVAAAAAAGGGGNTAPESAVGEASVAAGSGQVVKRGRGRPRKNQANGSHPPPATPPQPE LAIQLYGGGDVVKRGRGRPRGSGKLQILASIGGLVTETAGGGFTPHVVNVNTGEDVVSKIISFFQKGPRAVCILSANGPI SSVTIRPRGATNILRYEGHFEILSLIGSWTSSRDGGACMKNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQN ISNQIKKRRSNGSSNVPSMAGNPDSTKVDLQKVPKLTEGESSCPSPTSTLRLIAPSNGLVDDPITETTNAVPENVTIADK NMHFESVSGVDLEYHYAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 82 | 82 | - | – | |
| PANTHER | 13 | 327 | 315 | 5.2E-98 | ||
| PANTHER | 13 | 327 | 315 | 5.2E-98 | – | |
| PRINTS | 55 | 65 | 11 | 2.9E-5 | ||
| SMART | 55 | 67 | 13 | 0.86 | ||
| PRINTS | 91 | 102 | 12 | 2.9E-5 | ||
| SMART | 93 | 105 | 13 | 3.4 | ||
| ProSiteProfiles | 120 | 258 | 139 | 32.363 | ||
| SUPERFAMILY | 122 | 243 | 122 | 4.97E-25 | – | |
| CDD | 124 | 237 | 114 | 1.52386E-23 | ||
| Gene3D | 124 | 254 | 131 | 3.7E-12 | – | |
| Pfam | 124 | 238 | 115 | 9.9E-25 | ||
| MobiDBLite | 246 | 265 | 20 | - | – | |
| MobiDBLite | 246 | 267 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi3g1v0481300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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