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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0552600 |
| Transcript ID | LotjaGi3g1v0552600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein 3; TAIR: AT5G51300.1 splicing factor-like protein; Swiss-Prot: sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein; TrEMBL-Plants: tr|I1L5P7|I1L5P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97021888..97024198) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTGCGCTAATCAAAACCCTAACCCTATCTCTCCCTAATTCAATTCATTTCTCTTCTCTGTAATCATCCATGGAAG CCGTCGATTCCAATCCTCCCTACGATCTAACGCCGCAAAACGCCAACGGAATCCCATCGGAGAACGGCCAGGCCGCCGCT GACAACGGTTCACAACCGCAGATTTCGAAGCCTTTGGTTTCCGACAACGGATTAACCGGCAACACCCGCAGCGGCACCGA CAAGGACCAATCCGGCGGCGAGGAGGAGACCACCAGCAGGCGCCGCCGACGTAGCCGCTGGGACCCGCAGCCGGACTCCA ACGAGCAGGCCGGCGGCGATTCGGGACCCAAGAAGAGGAAGTCGCGGTGGGCGGATGATGATCCGAAGCCGTTGATTCAG CTACCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTCTGAATAGCAGGCTTCTTGAGATTAGTCGAAT GTTGCAGTCCGGTTTGCCTTTGGATGATCGTCCTGAAGGTGCTCGATCTCCTTCGCCTGAACCTATATATGATAACATGG GAATTAGGATCAATACGAGAGAGTATCGTGCTCGTGAGAGGTTGCAGAAAGAGAGGCAAGAAATTATATCGCAAATCATC AAGAAAAACCCTGCGTTTAAGCCACCTGCAGATTATAGGCCACCCAAGCTTCAGAAGAAGCTTTATATTCCAATGAAGGA GTACCCTGGTTACAATTTCATAGGACTTATCATTGGCCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAGACGGGTG CTAAGATTGTGATTCGGGGTAAAGGGTCTGTGAAAGAAGGGAGATTGCAGCAGAAGAGGGATTTGAAACCTGATCCTTCT GAGAATGAGGATTTGCATGTTTTGGTGGAGGCAGAGACGCCGGATGCGCTTGAGGCGGCTGCAGGCATGGTGGAGAAGCT CTTGCAGCCTGTGGATGAGGTGTTGAATGAGCACAAGAGGCAGCAGCTTAGGGAGCTTGCTGCTTTGAATGGGACCATTA GGGATGAGGAGTATTGCAGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCAGGACATCAACGTTTAAG AGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTCAAGGGTGCTACTGGGAAGAA GATGGATGATGAGTATCAGAACTTTTTAGCAGAGTTGGGAGGTACGGTTCCAGAATCCGCAACTAAGCAAACCAGTACAC TGGCAATTGGTTCGGGCAATTCCGGAAGCAACCCTCCTTGGGCCAACAACAATGGTGGCTCCACTGGTGGTGCAGCACAA GCTGGATTAGGGGCTGGTGCAGTTAAGAAGGAAATCGATGATACAAATTTGTACATTGGGTATTTGCCACCAACTCTTGA GGATGATGGCCTGATCCAATTGTTTCAACAGTTTGGTGAGATTGTTATGGCTAAAGTTATCAAGGATCGAATGACAGGGT TAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATAACGATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGC CTTGAGGGTCGAACCATTGCTGTTCGAGTTGCGGGCAAGCCTCCTCAGCCTGTTGTACCTCCTGGACCACCAGCGTCTGG TATGCCCACTTACCCTGTTCCGAGCCAGCCACATGGTGCGTATCCATCGCAGCAGCAATATGCCGCCGGCGGTCCCCTTG GGGTTGCTCCCCCGACAAACTATGGTGGCACCCCAGTCCCATGGGCTCCTCCCGTTCCTCCTCCATATGCCCCTTATGCA CCTCCCCCACCTGGGTCGACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCATTATCCTCCTCC CCCTGGTGCCCCACCCCAGCCTGCAACTTCTAATGAGCAGCAAAGTTACCCTCCCGGAGTGCAGTCTGATAATAGTACCT CTACTCAGTCTATACCAGCCAGTATGTACGGGAACACAGTACCTTCAATGCCTCCACCACCTCAACCTACATATCCTCCA TCATATGGATATCCACCTTACTACAATGCAGTTCCTCCACCACCCCCACCTGCACCTGTTACTTCAGAACAATCCCCCAG CTTTGGTAATGTGCCTTGGGCCAGCAATCCCATGGTGCCACCCCCTCCTTCAGATAATCAATCCCAGCCCAGGGCTACAA ACCCACCTTTGCCTCCTGCTTCATCAGCTGGTGATTCCGAGTATGAGAAGTTCATGGCAGAGATGAAATGA
CDS sequence (LotjaGi3g1v0552600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCGTCGATTCCAATCCTCCCTACGATCTAACGCCGCAAAACGCCAACGGAATCCCATCGGAGAACGGCCAGGC CGCCGCTGACAACGGTTCACAACCGCAGATTTCGAAGCCTTTGGTTTCCGACAACGGATTAACCGGCAACACCCGCAGCG GCACCGACAAGGACCAATCCGGCGGCGAGGAGGAGACCACCAGCAGGCGCCGCCGACGTAGCCGCTGGGACCCGCAGCCG GACTCCAACGAGCAGGCCGGCGGCGATTCGGGACCCAAGAAGAGGAAGTCGCGGTGGGCGGATGATGATCCGAAGCCGTT GATTCAGCTACCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTCTGAATAGCAGGCTTCTTGAGATTA GTCGAATGTTGCAGTCCGGTTTGCCTTTGGATGATCGTCCTGAAGGTGCTCGATCTCCTTCGCCTGAACCTATATATGAT AACATGGGAATTAGGATCAATACGAGAGAGTATCGTGCTCGTGAGAGGTTGCAGAAAGAGAGGCAAGAAATTATATCGCA AATCATCAAGAAAAACCCTGCGTTTAAGCCACCTGCAGATTATAGGCCACCCAAGCTTCAGAAGAAGCTTTATATTCCAA TGAAGGAGTACCCTGGTTACAATTTCATAGGACTTATCATTGGCCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAG ACGGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCTGTGAAAGAAGGGAGATTGCAGCAGAAGAGGGATTTGAAACCTGA TCCTTCTGAGAATGAGGATTTGCATGTTTTGGTGGAGGCAGAGACGCCGGATGCGCTTGAGGCGGCTGCAGGCATGGTGG AGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCACAAGAGGCAGCAGCTTAGGGAGCTTGCTGCTTTGAATGGG ACCATTAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCAGGACATCAAC GTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTCAAGGGTGCTACTG GGAAGAAGATGGATGATGAGTATCAGAACTTTTTAGCAGAGTTGGGAGGTACGGTTCCAGAATCCGCAACTAAGCAAACC AGTACACTGGCAATTGGTTCGGGCAATTCCGGAAGCAACCCTCCTTGGGCCAACAACAATGGTGGCTCCACTGGTGGTGC AGCACAAGCTGGATTAGGGGCTGGTGCAGTTAAGAAGGAAATCGATGATACAAATTTGTACATTGGGTATTTGCCACCAA CTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAGTTTGGTGAGATTGTTATGGCTAAAGTTATCAAGGATCGAATG ACAGGGTTAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATAACGATGGCAAACAATGCAATCTTGGCCATGAATGG TTATCGCCTTGAGGGTCGAACCATTGCTGTTCGAGTTGCGGGCAAGCCTCCTCAGCCTGTTGTACCTCCTGGACCACCAG CGTCTGGTATGCCCACTTACCCTGTTCCGAGCCAGCCACATGGTGCGTATCCATCGCAGCAGCAATATGCCGCCGGCGGT CCCCTTGGGGTTGCTCCCCCGACAAACTATGGTGGCACCCCAGTCCCATGGGCTCCTCCCGTTCCTCCTCCATATGCCCC TTATGCACCTCCCCCACCTGGGTCGACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCATTATC CTCCTCCCCCTGGTGCCCCACCCCAGCCTGCAACTTCTAATGAGCAGCAAAGTTACCCTCCCGGAGTGCAGTCTGATAAT AGTACCTCTACTCAGTCTATACCAGCCAGTATGTACGGGAACACAGTACCTTCAATGCCTCCACCACCTCAACCTACATA TCCTCCATCATATGGATATCCACCTTACTACAATGCAGTTCCTCCACCACCCCCACCTGCACCTGTTACTTCAGAACAAT CCCCCAGCTTTGGTAATGTGCCTTGGGCCAGCAATCCCATGGTGCCACCCCCTCCTTCAGATAATCAATCCCAGCCCAGG GCTACAAACCCACCTTTGCCTCCTGCTTCATCAGCTGGTGATTCCGAGTATGAGAAGTTCATGGCAGAGATGAAATGA
Protein sequence (LotjaGi3g1v0552600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAVDSNPPYDLTPQNANGIPSENGQAAADNGSQPQISKPLVSDNGLTGNTRSGTDKDQSGGEEETTSRRRRRSRWDPQP DSNEQAGGDSGPKKRKSRWADDDPKPLIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYD NMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKE TGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNG TIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQT STLAIGSGNSGSNPPWANNNGGSTGGAAQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRM TGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASGMPTYPVPSQPHGAYPSQQQYAAGG PLGVAPPTNYGGTPVPWAPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVHYPPPPGAPPQPATSNEQQSYPPGVQSDN STSTQSIPASMYGNTVPSMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPR ATNPPLPPASSAGDSEYEKFMAEMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 111 | 111 | - | – | |
| MobiDBLite | 9 | 56 | 48 | - | – | |
| PANTHER | 44 | 622 | 579 | 4.2E-245 | – | |
| PANTHER | 44 | 622 | 579 | 4.2E-245 | ||
| MobiDBLite | 57 | 79 | 23 | - | – | |
| MobiDBLite | 88 | 105 | 18 | - | – | |
| Pfam | 95 | 202 | 108 | 9.9E-27 | ||
| Gene3D | 142 | 326 | 185 | 9.6E-59 | ||
| MobiDBLite | 142 | 161 | 20 | - | – | |
| SMART | 206 | 298 | 93 | 1.5E-9 | ||
| SUPERFAMILY | 206 | 332 | 127 | 7.96E-29 | ||
| CDD | 207 | 323 | 117 | 1.4125E-57 | – | |
| Pfam | 221 | 294 | 74 | 1.3E-6 | ||
| ProSiteProfiles | 221 | 293 | 73 | 10.064 | – | |
| MobiDBLite | 251 | 272 | 22 | - | – | |
| SUPERFAMILY | 324 | 370 | 47 | 1.84E-7 | ||
| SMART | 327 | 343 | 17 | 0.044 | ||
| Gene3D | 327 | 380 | 54 | 3.8E-8 | – | |
| ProSiteProfiles | 328 | 342 | 15 | 8.664 | ||
| SMART | 353 | 369 | 17 | 0.3 | ||
| ProSiteProfiles | 354 | 368 | 15 | 8.713 | ||
| MobiDBLite | 396 | 424 | 29 | - | – | |
| Gene3D | 417 | 526 | 110 | 8.2E-25 | ||
| SUPERFAMILY | 440 | 542 | 103 | 9.54E-27 | ||
| ProSiteProfiles | 444 | 522 | 79 | 18.172 | ||
| SMART | 445 | 518 | 74 | 4.0E-23 | ||
| Pfam | 446 | 515 | 70 | 1.3E-18 | ||
| MobiDBLite | 522 | 567 | 46 | - | – | |
| MobiDBLite | 523 | 540 | 18 | - | – | |
| PRINTS | 581 | 593 | 13 | 1.3E-9 | – | |
| MobiDBLite | 596 | 623 | 28 | - | – | |
| MobiDBLite | 596 | 745 | 150 | - | – | |
| PRINTS | 600 | 616 | 17 | 1.3E-9 | – | |
| MobiDBLite | 624 | 653 | 30 | - | – | |
| PRINTS | 653 | 674 | 22 | 1.3E-9 | – | |
| MobiDBLite | 655 | 691 | 37 | - | – | |
| PRINTS | 675 | 691 | 17 | 1.3E-9 | – | |
| MobiDBLite | 704 | 726 | 23 | - | – | |
| PRINTS | 707 | 732 | 26 | 1.3E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Pre-mRNA branch point binding | Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site. |
Expression pattern of LotjaGi3g1v0552600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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