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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0040600 |
| Transcript ID | LotjaGi4g1v0040600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HVA22-like protein; TAIR: AT1G74520.1 HVA22 homologue A; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|A0A151T2F4|A0A151T2F4_CAJCA HVA22-like protein; Found in the gene: LotjaGi4g1v0040600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4784375..4787619) extracted from Lotus japonicus Gifu genome v1.2.
TACTGTACTTGACTTACTAGCGAAGACTTCTCTTTACCTCTTCCATGTTCTTTCCAATTCCAATACAAACTCCATCGTTT TATTCTCCTTCTTCCTCTTCCTTTAAAAGCCTTGGTTGGCAATTGCAGTAACAAGGTTGAAGTTGAATTCAATGGCTACT CTATGGTTTCTCAATTTGGCTCTCAAATGCATTCACCATTTTGCATGGTATGAACACGCTTATACTTCGTTTCCTTGCTT TATAGTAATTTCTGAATTTGATCACATTTATATAAAGAAAAAAACTTATATTTTCACATACATCTTCATATTTACTTATT CAGTGTTCTCAATGCAAGCTAATCATTTGTCTTTGTTTCTTATTTCATTTTCTAGGCCTCTTCTTGCTCTGGGGTATCCT ATGTAAGTTACTTAATTTCTCCCTTTATCTTTGAGTGTGAAAAATTCCCACTAACCCTTTGTCTCTTTTAGTGTTATCTT CATTAATCTCCTTACCCATTTTTGATGTGATAAAAAAGTTGTAACCCTTAAAATGTTTTAGTTATACTGTTTTTTGTGAT TATGGTTTGTGTGTTTGTGATAGGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCAACAAGGAAATGAGGAATTTGAT CTCATATTGGATACTTCTCTCATTGTTATACCTGTTTGAGTATGCTTTTATGAGACTTCTCCAATGGTAAATCGTTTACC CTATAATATTTCTTCTACAATGATGAGAATTCTACATTTCTACTTGTTCATATTCTTTTACTGGGATTGAGAACCTGATT GAACTCCTAGATTATCAATGCACCTCCAATGTGCAACCTACAAAGATTTGGGCATGAAATTCCTTCTAAGACTCCTAGTC TGTTTTAATCCAAGAGAATTGAAATGTGGCTTCAAGCCTTCAAGAACCATTTCTATTTTCCTTTACTCAACCTAACTCCT GGAAACTTGATTTTGCAAGTGGAAAGCAATTTGTGATTTCTGATTAAATTGGTTAATCTTGAATTGTAACTTATGCGACA TTTGTCAACCTTCAATGCAACACTTAAGAAATTCAAGGCTTTATTTGAAGAGTTTGAGTTGGTTTGAACAGTGAACACTT TAGTTTGTAATCTAATATGTCCAGATTCTCTTAGGATTTCTGTGTCTGCAGATTAACAGTATTTTCATTTTCTGAAGTTA CCAGTACCAGTTGTCAACCTTCAATGCAACACTTAAGAAATTCAAGGCTTTATTTGAAGAGTTTGAGTTGGTTTGAACAG TGAACACTTTAGTTTGTAATCTAATATGTCCAGATTCTCTTAGGATTTCTGTGTCTGCAGATTAACAGTATTTTCATTTT CTGAAGTTACCAGTACCAGTTGTTGTTGTTACTTTTTATCATCTAATACTCAATTATATGATTTTATTAAACAAAGTTTG TACTTGTAGCATAACAAATAATTTCTGTTTTCATTTTGTCAATTTGTTGATTTGTTTAAACTACTTAACTCCTATGCTTA ACATTAGGTTTCAGTGCTGGCCTTACATGAAGCTAATGATCATCTTCTGGCTCATCATACCCGACTTCGGACGAGCTTCA AACGTGTATAATAACCTTATTTGCTCATGGATCTCCATGAAACCACAAACAGACATATGCAGATGGAGGAAGTTTTTTGT CAAGAAAGAAAACTTTTTACTGCAAGAAGAGAAATATATAAAAGATAATGGAACTGAAGCCTTGGAGAAATTCAATGCTA GCAAGGTAAACAGCTATGTGGCAGCATGTTATATAAATTGGTTGGAGTAAAATTCTCCAAATGCTATGACCCTATACAAA TATTTTAGGGAAGCATGTTTATGTCTCTATATTGAAGTGTATGGCATTGACTAGAAGCTAATTCTCTTTCTTTCTTTTGT TTTTTCATTTCAAAGGACACAACAGATAAACCTGATGCAGAAGCAACAAATGCGATTAGAGTTACTTGTAATAAAGAAAT GCAACAGGTAAATTGTTGATGTTACAAGTGTAGCTGTGACATTAATATAATTTTTGTAGTTCTTGTTTTAGTGTTCTTCC CATCTAAGTTTTCTTATGGCATTCAAAGTACTTACTGAAATAGCAGATTGTGCAGAAAAATGAAAAAATGCTCCAAACAG AGCACAAAGACATTAAAGATTTGGAGGTCATTGAGAAAAAAGAAATTCCTGCTGGCAAGCAAGTAAGGTTTCAAGGATAA ATTTTCCTTCTCCTGATATGCATGTGTTAACTTACCATAGTTTATATATGGAAAGTATTCAAAATTATGCATTCTTCCAA TCATGTTGGTGAGGTTGCAATAAGTGCTTAACCTGTAAACTACTCTTGAATATTGCAGGATATTCCTTCCTCACCTAACC TTGCAGCAAGCCATAATGCTTCATCAACCATGGTGGAAAATAAAGGAATAGGAGTGAAAGGCAGCGCCAGTGAAGAGTTT TCTCAGAGTTCAACACATAAGGAAGTGCAAAAAGAGTGGACTTGCGCTTTGTGTCAGATAAAAGCTTCGAGCGAGAAAAA CTTGAAATCCCACTTACATGGGAAGAAACACTGGGAAACTTATCAAGCTTTAAGAGCAAAGACTCGACCTGTGACTCAGA AGCTGAAAATTGATCTTCCCAAAGAGGAACAGAAACAGAAGAACATCATTACCAATTATCAGCTAAGTTACAAGACCAAT AAGGGAGAGAGTATTGTTAACACTGGTTTGAAGGGAAACGAAGTCATGGATCATAATAAGGTGAAAGAAATGCAAAAGAT CCTGTCTCAATATGCTAAGGTGAAATATTCCAATTTTAGGTGTGAAGTCTGTAATGTCTGCTGCACTAGTAAGGGTGACC TGGCCTCTCACTTAAATGGGAGGAAGCACTTGGAAAATATTATGGGGGTAGATGAGCTTAGAGGTAGTTGAGTTTTCACT ATTGCTACAAATGCTCGGGGTAGAAAAGTCTGTGTGTAGATTGGTAGTTTAATTGACAGTAGGGAGACTGCTTGAAAGTT GAAAGGAATTTGGGGAACAGAACCTGTATTACCTAGTATTTATTCTGGTAGTTGTTCTACCTTGTTCAGAGGGTTAATGA ATATATCCTTCTCTATGACAACTTTTTTTTAACTTCTAAGTCACTGCATCGCAGGTTCTTTTGCTGGGGACAGTGAATTG TTTGAACACTTCATTCCCATATCTATACTTACCATTGTGATTCTA
CDS sequence (LotjaGi4g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTCTATGGTTTCTCAATTTGGCTCTCAAATGCATTCACCATTTTGCATGGCCTCTTCTTGCTCTGGGGTATCC TATGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCAACAAGGAAATGAGGAATTTGATCTCATATTGGATACTTCTCT CATTGTTATACCTGTTTGAGTATGCTTTTATGAGACTTCTCCAATGGTTTCAGTGCTGGCCTTACATGAAGCTAATGATC ATCTTCTGGCTCATCATACCCGACTTCGGACGAGCTTCAAACGTGTATAATAACCTTATTTGCTCATGGATCTCCATGAA ACCACAAACAGACATATGCAGATGGAGGAAGTTTTTTGTCAAGAAAGAAAACTTTTTACTGCAAGAAGAGAAATATATAA AAGATAATGGAACTGAAGCCTTGGAGAAATTCAATGCTAGCAAGGACACAACAGATAAACCTGATGCAGAAGCAACAAAT GCGATTAGAGTTACTTGTAATAAAGAAATGCAACAGATTGTGCAGAAAAATGAAAAAATGCTCCAAACAGAGCACAAAGA CATTAAAGATTTGGAGGTCATTGAGAAAAAAGAAATTCCTGCTGGCAAGCAAGATATTCCTTCCTCACCTAACCTTGCAG CAAGCCATAATGCTTCATCAACCATGGTGGAAAATAAAGGAATAGGAGTGAAAGGCAGCGCCAGTGAAGAGTTTTCTCAG AGTTCAACACATAAGGAAGTGCAAAAAGAGTGGACTTGCGCTTTGTGTCAGATAAAAGCTTCGAGCGAGAAAAACTTGAA ATCCCACTTACATGGGAAGAAACACTGGGAAACTTATCAAGCTTTAAGAGCAAAGACTCGACCTGTGACTCAGAAGCTGA AAATTGATCTTCCCAAAGAGGAACAGAAACAGAAGAACATCATTACCAATTATCAGCTAAGTTACAAGACCAATAAGGGA GAGAGTATTGTTAACACTGGTTTGAAGGGAAACGAAGTCATGGATCATAATAAGGTGAAAGAAATGCAAAAGATCCTGTC TCAATATGCTAAGGTGAAATATTCCAATTTTAGGTGTGAAGTCTGTAATGTCTGCTGCACTAGTAAGGGTGACCTGGCCT CTCACTTAAATGGGAGGAAGCACTTGGAAAATATTATGGGGGTAGATGAGCTTAGAGGTAGTTGA
Protein sequence (LotjaGi4g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLWFLNLALKCIHHFAWPLLALGYPMCASVQAIETDSNKEMRNLISYWILLSLLYLFEYAFMRLLQWFQCWPYMKLMI IFWLIIPDFGRASNVYNNLICSWISMKPQTDICRWRKFFVKKENFLLQEEKYIKDNGTEALEKFNASKDTTDKPDAEATN AIRVTCNKEMQQIVQKNEKMLQTEHKDIKDLEVIEKKEIPAGKQDIPSSPNLAASHNASSTMVENKGIGVKGSASEEFSQ SSTHKEVQKEWTCALCQIKASSEKNLKSHLHGKKHWETYQALRAKTRPVTQKLKIDLPKEEQKQKNIITNYQLSYKTNKG ESIVNTGLKGNEVMDHNKVKEMQKILSQYAKVKYSNFRCEVCNVCCTSKGDLASHLNGRKHLENIMGVDELRGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 4 | 386 | 383 | 1.4E-106 | ||
| PANTHER | 4 | 386 | 383 | 1.4E-106 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 15 | 23 | 9 | - | – | |
| Phobius | 24 | 46 | 23 | - | – | |
| Pfam | 27 | 101 | 75 | 8.1E-17 | ||
| Phobius | 47 | 67 | 21 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 68 | 394 | 327 | - | – | |
| Gene3D | 238 | 286 | 49 | 6.6E-8 | – | |
| SUPERFAMILY | 241 | 285 | 45 | 5.95E-8 | ||
| SMART | 248 | 282 | 35 | 0.013 | ||
| Pfam | 251 | 275 | 25 | 6.7E-8 | – | |
| SMART | 251 | 275 | 25 | 3.5 | ||
| Gene3D | 338 | 389 | 52 | 1.2E-8 | – | |
| SUPERFAMILY | 345 | 385 | 41 | 3.22E-9 | ||
| SMART | 354 | 388 | 35 | 0.0054 | ||
| Pfam | 357 | 381 | 25 | 1.1E-8 | – | |
| SMART | 357 | 381 | 25 | 0.039 | ||
| ProSitePatterns | 359 | 381 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0040600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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