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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0043300 |
| Transcript ID | LotjaGi4g1v0043300.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|I1KL88|I1KL88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0043300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5119257..5122945) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTATCAGTATTTGCTGGGAGGTATATTGGCTTGTTACGCTTGTAGTTTGGCCTTTTTGTTTGTTCTGTACAGTTT TGCAGCAAAGAGGAATGCCACAAGTTCAAGTTTATTACATTTAAAGAGTAATGGGAGTGCAAAGACATCAGAAAATGGAA TATGCCAACAAAAGGGTGAAGGAAGTATAGATGTCATCATTGTTGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACA CTTGGAAAGGTATGAGGTTTTTTTTTTCTTCCTAAAATTTATTCAGGTTTTCTGGTTTTAAAAATAGTAGTAATGAATGA AAAGAATCTTAAAGTAGATGAATGAAAACAAGAGTAAATTTTATGTGAAGTAAAGTTGTCATGAGTTTATTTAAGTTTGG TTGCAGTAATACTAATATTTGTAGATATTATTGATGAACATTTGTTCAACTTATATAATGGTCATATCTTCTTTTCCTTT CCATTTTCCCAGCAATCAGAGACAGAGAGAATAAAACTCTGAAAAGTTTTATATTTCTTCCTTTTCATGATTTGCTCTTA GAGTCAATGGACTGGAATAGGGTCATCAGAAAGTACTAATGTCATTAGTTAATTAATTAAGCAGATTCAAATTTGTGGTT AAAAGGTCAATTTTTCTTGGTATTGTTCTGCACTAGTTGCAAACTTGGTGAGAGATGACTTCAAAAATAAGCTTGATTTC TAGAAGAGATGTTTTGGAAAGCCCTCTTAATTTTTGCATGAATGAATCATATGTTTGTATTAAATTAACCCGTTTAATTG CGGCCGCAACATAAAGGGATTTTAGGTCCCCAAAAAAGCATCGTGACAACAATTGCACCCGTTTCGATCCACATTTGCCT ACAATTCTAAAATGCAGCCGCAGCTGCTAACGCGACTGCAACTACAATTTAAAACCCTTGAGAATGCTAATTAAGTGATC TTACTTTGTGCTTCTTTGTTGCAGGATGGAAGGCGAGTGCATGTGATTGAAAGGGACTTGAGTGAACCTGATAGGATTGT GGGTGAATTGTTACAACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTTGAGGGTAAGTAAGAAACTTATCAAGATA TGAAAATTTTGTGTGAATTTGATAGATAAATGATTCTGTTACTATTGAAGTATGAACAACTCCCCTAACTTTGCTGATCA AAATCATGGTTCTTAACAAATGAATATTCTGAACCATTTCAGATTGTGTGGATGAAATTGATGCTCAAAAAGTCTTTGGC TATGCTCTTTATAAGGATGGTAAAGATACCAAGTTGTCTTACCCCTTGGAAAAATTTCATTCTGATGTTTCTGGGAGAAG CTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCTAAAGTACACAATTTTACCTTATTGTC TTTTTCATTAAAAAGAACGAAAATAGTTTGTCGACATCCGCATATTGCGGACACCTTGCAAATAACCAGCGTGAGGAAGG AAGAGAAGAGAGAAGTAATGAATATGTCTGGGTTTCAAATTACGTGTGGTTCACAACGTAACGGGTTTTGGAGTTCCCGT ATCAGCATTTCAGAGCGATAGAGAGAAAAATGAGATATCTATGGAGTTGTTTGATAGTTTAGTTATGTGAGGTTTATAGT TTGCACTCAAGTTATGTCCCCTTATAGTATCATCCTAATTTTTTGCAGTGTAAACTTAGAACAAGGAACTGTTACATCTC TACTTGAAGAGAATGGAACCATTACAGGGGTGCACTACAAAACCAAGAGTGGACAAGAGCTAATAGCAAAGGCTCCCCTC ACCGTTGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCTAAGGTAAGGATGCTAGGTTCCTTTTC CAGTTATATGATAATGTATTAACATGGTTCAAGGTTTTCTATTTTTAATTTCTCAGCTTCCATGTAAAATGGATTTACAT GTTCAAATTTATAGTCAAGAAAGCATAGAATGTTAAATGTTGTTTGATAAATGTCACTATATATATCTGCAGGTTGAAGT ACCCTCTCATTTTGTTGGCCTAGTCTTAGAGAACTGTAATCTTCCATATGCAAATCATGGACATGTTATCTTGGGTGATC CTTCACCCATTTTATTCTATCCCATCAGTAGCACTGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAAAATTACCGTCC CTTGGTAATGGTGAAATGGCCCTCTATTTGAAAACTGTGGTAGCTCCCCAGGTACAAATCTAATCTTTTTCTTGGCTTAA CAACTAGTTAGCGTATCAGCTTTCAGCTTTCAGCTAACTTATTATTTAGGTCTTGTCAAACAAACTCCAAGTCTTTCGAA ATAATGGGCAATCTACATATTTAAGCTAGATAATATTTTTAAATTTTGTTGATTAGTTTCTGTTTTATATTCATTCTACT AATTGTGGAAATTGTATCTTTCAGGTTCCCCCAGAGCTGTATACTTCTTTTGTAGCTGCAGTTGATAAAGGAAACATGAG AACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCTACACCCGGTGCCCTTCTGATGGGAGACGCCTTCAATATGC GCCACCCGTTAACCGGAGGAGGAATGACCGTGGCTTTGGCTGATATTGTTGTGCTCAGGAATCTACTGAGACCTCTGCGT GATCTGCGTGATGCTTCTTCTCTTTGCAAATACCTTGAATCATTCTACACCCTGCGCAAGGTATGTAAGTAACAAATATA ATTTTGAGCGAGTGAAGAATGGAGCCTGAAATATTTTGGCGCTAGAAAGTTAGTTCCCGAAAGAAGTAAATACGTTTGTA AGTCGCTGAATATGTAAAATGTCGGTCAAGTTAGTCCCTTAATCGCCATTTTAGTTTACCAAATCTGTCCATAGGGACTA CATTGACAGAAGTATTCACATTTAGGAACTCCCAAACGTATTTCCTTCTACCAGACACTTACTTGCCGTCAAACTTTCAG GAAAAATAGACCAGTCACTCAATTTTGAGCAATCTACTATTTTAACCATTTAGGGTGAATGATTAGGTTATAGTAACTTC AATGCTTAACCAAATTAGTGGAAAAAGGAAGAAAAACTTAGTGCATTGCCTGATTCTATTTGTAGCCAGTGGCATCTACA ATAAACACATTAGCTGGGGCATTGTACAAGGTGTTTTGTGCATCTCCTGATCCTGCTATGAAGGAAATGAGACAAGCATG TTTTGATTATTTGAGCCTTGGAAGTGTTTTCTCAGAGGGACCAACAGCTCTGCTCTCTGGTCTAAATCCTCGTCCACTGA GCTTAGTTCTCCATTTCTTCGCGGTGGCTATATATGGCGTTGGCCGACTTATGATACCATTTCCTTCTCCAAAACGGATA TGGATTGGAGCTAGATTGATTTCAGTGAGTGTTTCTCATATTCATTTTTGCTTTAAAAGAATCATTTTTGTCACATTCTC ATCAAATACAAAAAGCTTCAACAAATTTTGATTTTGAATCAATTTTTTCTTTCTGATATTCCAGGGTGCAGCAGGTATCA TTTTCCCCATTATCAAGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTGCCTCCT GTCTATTAA
CDS sequence (LotjaGi4g1v0043300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCAGTATTTGCTGGGAGGTATATTGGCTTGTTACGCTTGTAGTTTGGCCTTTTTGTTTGTTCTGTACAGTTT TGCAGCAAAGAGGAATGCCACAAGTTCAAGTTTATTACATTTAAAGAGTAATGGGAGTGCAAAGACATCAGAAAATGGAA TATGCCAACAAAAGGGTGAAGGAAGTATAGATGTCATCATTGTTGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACA CTTGGAAAGGATGGAAGGCGAGTGCATGTGATTGAAAGGGACTTGAGTGAACCTGATAGGATTGTGGGTGAATTGTTACA ACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAAAAAGTCTTTGGCT ATGCTCTTTATAAGGATGGTAAAGATACCAAGTTGTCTTACCCCTTGGAAAAATTTCATTCTGATGTTTCTGGGAGAAGC TTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCTAAATGTAAACTTAGAACAAGGAACTGT TACATCTCTACTTGAAGAGAATGGAACCATTACAGGGGTGCACTACAAAACCAAGAGTGGACAAGAGCTAATAGCAAAGG CTCCCCTCACCGTTGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCTAAGGTTGAAGTACCCTCT CATTTTGTTGGCCTAGTCTTAGAGAACTGTAATCTTCCATATGCAAATCATGGACATGTTATCTTGGGTGATCCTTCACC CATTTTATTCTATCCCATCAGTAGCACTGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAAAATTACCGTCCCTTGGTA ATGGTGAAATGGCCCTCTATTTGAAAACTGTGGTAGCTCCCCAGGTTCCCCCAGAGCTGTATACTTCTTTTGTAGCTGCA GTTGATAAAGGAAACATGAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCTACACCCGGTGCCCTTCTGAT GGGAGACGCCTTCAATATGCGCCACCCGTTAACCGGAGGAGGAATGACCGTGGCTTTGGCTGATATTGTTGTGCTCAGGA ATCTACTGAGACCTCTGCGTGATCTGCGTGATGCTTCTTCTCTTTGCAAATACCTTGAATCATTCTACACCCTGCGCAAG CCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTGTACAAGGTGTTTTGTGCATCTCCTGATCCTGCTATGAAGGA AATGAGACAAGCATGTTTTGATTATTTGAGCCTTGGAAGTGTTTTCTCAGAGGGACCAACAGCTCTGCTCTCTGGTCTAA ATCCTCGTCCACTGAGCTTAGTTCTCCATTTCTTCGCGGTGGCTATATATGGCGTTGGCCGACTTATGATACCATTTCCT TCTCCAAAACGGATATGGATTGGAGCTAGATTGATTTCAGGTGCAGCAGGTATCATTTTCCCCATTATCAAGGCTGAAGG AGTAAGACAAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTGCCTCCTGTCTATTAA
Protein sequence (LotjaGi4g1v0043300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYQYLLGGILACYACSLAFLFVLYSFAAKRNATSSSLLHLKSNGSAKTSENGICQQKGEGSIDVIIVGAGVAGAALAYT LGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQKVFGYALYKDGKDTKLSYPLEKFHSDVSGRS FHNGRFIQRMREKASSLLNVNLEQGTVTSLLEENGTITGVHYKTKSGQELIAKAPLTVVCDGCFSNLRRSLCNPKVEVPS HFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMALYLKTVVAPQVPPELYTSFVAA VDKGNMRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLRDASSLCKYLESFYTLRK PVASTINTLAGALYKVFCASPDPAMKEMRQACFDYLSLGSVFSEGPTALLSGLNPRPLSLVLHFFAVAIYGVGRLMIPFP SPKRIWIGARLISGAAGIIFPIIKAEGVRQMFFPAMVPAYYRVPPVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 526 | 526 | 0.0 | ||
| PANTHER | 1 | 526 | 526 | 0.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 29 | 459 | 431 | - | – | |
| SUPERFAMILY | 63 | 438 | 376 | 1.22E-46 | ||
| Gene3D | 64 | 402 | 339 | 2.3E-43 | ||
| PRINTS | 64 | 86 | 23 | 3.2E-10 | – | |
| Pfam | 67 | 93 | 27 | 2.0E-5 | – | |
| Gene3D | 105 | 329 | 225 | 2.3E-43 | – | |
| PRINTS | 213 | 228 | 16 | 3.2E-10 | – | |
| Pfam | 213 | 486 | 274 | 8.1E-119 | ||
| PRINTS | 341 | 356 | 16 | 3.2E-10 | – | |
| PRINTS | 356 | 372 | 17 | 3.2E-10 | – | |
| Phobius | 460 | 479 | 20 | - | – | |
| Phobius | 480 | 484 | 5 | - | – | |
| Phobius | 485 | 503 | 19 | - | – | |
| Phobius | 504 | 527 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0043300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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