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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0120100 |
| Transcript ID | LotjaGi4g1v0120100.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B0TAF1|ERA_HELMI GTPase Era; TrEMBL-Plants: tr|A0A0L9TNW9|A0A0L9TNW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17347130..17350729) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGTTATAATGTAATGCAGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGCAAGAGTACACTAGCAAACCAAATG GTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAACGGA TTATCAGGTTTTTAGTCTTGAGTGGTTGCTAATTCTTCTGTTTGAGTTTATCAGCATGTTTACTTGCCTCTCATTTTCCT GCATGCCCTTCCCACATGAATCATGGATTCTGCATTTCCGAAATGCATAATACTATTCAGAGTCTCTAGGATTTTTGAAT TGAAGATTGGTTTTTTTCTATAATCAATGTGATCTTCATGACATTCTACTTAATGTTCTCGAAATATTAGAGGGGGTTTA TTCCCATCTCATCATAGGAAATTTAATTTTCTTAATAATATTATTAACTAGAACAAAAGACATTCAATATGTGATTTGAG TTTTCTTGGCTATTATCCTAGCCTTGAATTAATGGATGCACACTTGCACAGCAGCATTTGTGTTATATCTTCATTTCTGT GACCTGTGAATCTCTTGCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATG ATGATGAAAAATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAAA AGTATGGTTCTTGGTTTAAATAACTGTTCTATTTATTTTCCTTTTTTGCTGAATTACTTGCTGTTCTAGATTGATGAATT GTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACCTG GAGAAGTTGCAAAGAAACTTGAGGTTGGAGCTCATTAATTAAAGTTTATATTGGAATGTATTAGTTAATCCACTGATCTG GCATGATTTTTCCAGTGCCGTATGTCCTAATTATTTGATATTTCTCGCAGTGGTATGAGAAATTTACCAACGTTGATGAG GTTATACCAGTTAGTGCTAAATATGGTCATGGGGTTGCAGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGACC ATCTTATTATCCAAAAGCAAGTCAAAGTTTTGCTGCTCTCATTCTATTGTCTATTATTGCATCATCACTGTCTCATTTCA CTTTTAGAGATAAAAACAGGAACCATTAGACACTGAACTAACCATTTCTTCTGCTATTCCATGCCTGACTATGAAAAGAA TAAATGCATTTGATTTAGAGTTCAAAATTCAGAGTAAACTTCAGTGAAAACTGGCTAATTACCTTGGGTTTTATGTTGAA GTTCATTTAAATTGAACCATAAATGCATACAACAGTTACCAATACACATGTTGTTTAATTTACTTTAAGGGTACCTGTTA GTTTTTCTTGTGTATAAAGATGTGTTATGAACAATAAAGTGACAGTCATCCTTGACTGATCAAATTTGTGTAGAGATCTT ACATCTTGGAAGGTCATTTTTTGAATTCATCTATCAAGGATAAACGAATTGGTTCATGTGTTTTTTCCATAATGTGAACC ACCTCTATAGGCATAGAGTCGCATTGACGGTGATATTGAGAAGGCTATTAGTAGCACACTAGTACTGGCTGGCAACTGTG CGTGACTCTCATAGTTCCTGTACTGTAAGATTTAGAAATAGAAATAATTTTAGATGATGACGAACATTATATAATGCCAT GCCCTTTAATATAGGTCTAATGGCGCAAATAGTGTTGACTCTGAAGGACCAATATTTCAAATGTCGCGCCATCAATATTC CTCCAATACTAGAGTGTGTTGCAGATCCCCTCTAGCTATCACTATAGTATTCTGTTAAAACCTTTAGATATGATAAGAAC ATGAGTGACTTGTCATTTCTTCTGCATACATTTCTTTCATGTGCTGCACTTACCTTAATCTTGTTCTTGAATTCACAGGA CATTGTCAGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAA TTCCCTACGCATGCCAGGTGATCATTGAGTTCATTATTTTATTTATGATACAGCTACCTTCCCTTCACCCCACAAAAGGG GAAAAAAAACAATAAAGAAGAAGAAAGAGGTTTCGAACAGGAAAAAAAGGAATTGAAGTTGTAACTAATTTCCTTTTATA CAAATGCTTACAATTTTTTTTCCTATTCTTCCAGGTGAATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGATTTCA TACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAAGATGATCGTTATTGGAAGAGTATGTAATTTATATCCATTGTGA AAAACCAGAATAGATCAATCCAAAAATCAATGAACCAGTTAGATGTCTTGTTTTTAAATTAAAAAACCCAGTTGATTTTC CATGAAAAACTGGTGACGATGAATTGCTTTTGATTGGTTGTTTTTAATTTTATTAATTTTTGTATTTTTTAATTTAAAAA AAGAATTTTAGCAAAATAAAAATCAATGCTAAGTTGTAGAAGTTCACATGTGGATTATTACAATTTAAGCTTTCATTATT GATAGTTTTTAATATTAGAATGTATAATATGGTCAATTTTTGTTAATTCTAAATTTTGCTTAGCTTAAATTCTTGGTTTT TTATTTATTTTACTCCGTGATGTATTTTATAATATTAAAAATATATTTAATTATCACCTTTTTAACCACGGTTTAACCAT AGTGAAACCAAAGAATTGTGAACTAGAATTTTCATCAGTACAATAGTAGTCTGTTACTCTGATATTTAAGCAATTGCTTA TCTCATAATTCAGTAAATTGTTTGTGAACTTATGGAATTGATTTATACAAGACACAGTGAAGTGCAATACTGTGATTGGT ATTTCTTTGATTCTGTCTTTTTGGCATTTGTTTTGAATTTACTCACTTTAAACTGTATATGACAACATTTTGTATGAAAG GATTTTTTTATATGCTTGAGGTGTTGACCCTTGACATGGCTTGCAACCAAAATTAATACCAATTTCCTAATGTTTTGTTC ATATTGAATTCTTACGCATTATGTTTCCATTGGGTGAAATAATCTAATACTGCTAATATATGCTTCTGCCCCCCTCAAAT GATCTGTTGCATAGTTATGCTTGAATAGTAACCCACATGTATGTTGTGATCAACTACTTCAGGAAGGAAAGGCTTTGAAA CTGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGGTGCATATCCACAGAAT TTTATTTTGTATCTATGCTACATTTGAACCTGAACCTGCATATTTTGCTGGTTTATTTATTAATCTTGATTCTTGAGAGT CAAGTTGTAACAATCATCATGCATTTTACTTCGAGAGTTGAAAAATATTTACTCAACACTGGTGTCTGAACAGATTGAAG TGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATGA
CDS sequence (LotjaGi4g1v0120100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAAC GGATTATCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAA ATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAAAAATTGATGAA TTGTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACC TGGAGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACCAACGTTGATGAGGTTATACCAGTTAGTGCTAAATATG GTCATGGGGTTGCAGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGACCATCTTATTATCCAAAAGCAAGTCAA AGTTTTGCTGCTCTCATTCTATTGTCTATTATTGCATCATCACTGTCTCATTTCACTTTTAGAGATAAAAACAGGAACCG TCTAATGGCATATGATAAGAACATGAGTGACTTGTCATTTCTTCTGCATACATTTCTTTCATGTGCTGCACTTACCTTAA TCTTGTTCTTGAATTCACAGGACATTGTCAGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATT TTTATGCAGTATCGAAATGAAATTCCCTACGCATGCCAGGTGAATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGA TTTCATACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAAGATGATCGTTATTGGAAGAGAAGGAAAGGCTTTGAAAC TGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGA GAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATGA
Protein sequence (LotjaGi4g1v0120100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDTPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVLVDACKAPEKIDE LLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWILSKLPNGPSYYPKASQ SFAALILLSIIASSLSHFTFRDKNRNRLMAYDKNMSDLSFLLHTFLSCAALTLILFLNSQDIVSEHPERFFVAEIVREKI FMQYRNEIPYACQVNVVSYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEVKVR ENWRQDEGLLKDYGYGGQIRVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 150 | 150 | 36.243 | ||
| CDD | 1 | 148 | 148 | 7.07043E-49 | ||
| Hamap | 1 | 335 | 335 | 21.742 | ||
| Gene3D | 1 | 160 | 160 | 4.0E-30 | – | |
| PANTHER | 1 | 339 | 339 | 4.9E-127 | – | |
| PANTHER | 1 | 339 | 339 | 4.9E-127 | – | |
| Phobius | 1 | 161 | 161 | - | – | |
| SUPERFAMILY | 2 | 244 | 243 | 8.01E-29 | ||
| Pfam | 3 | 101 | 99 | 1.2E-10 | ||
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 162 | 180 | 19 | - | – | |
| Phobius | 181 | 199 | 19 | - | – | |
| Phobius | 200 | 217 | 18 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 218 | 342 | 125 | - | – | |
| SUPERFAMILY | 220 | 335 | 116 | 2.14E-36 | ||
| Gene3D | 224 | 339 | 116 | 7.9E-37 | ||
| ProSiteProfiles | 244 | 321 | 78 | 10.487 | ||
| Pfam | 247 | 324 | 78 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0120100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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