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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197800 |
| Transcript ID | LotjaGi4g1v0197800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U285|A0A151U285_CAJCA DNA polymerase I; Found in the gene: LotjaGi4g1v0197800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45488434..45494619) extracted from Lotus japonicus Gifu genome v1.2.
CCTACAAACACGCTGGTGAAAAAAATTCTTTTTTTATTTTTCATACAGAAGTAGGCTTGTATATTAATGAAGTATTTATC AGTTGTGTTGTAAGAAATGGATACATTAAGGTTATCTTTCAGAAAGTCATATTGGCTTTAAATTCCTGGTTTTGTCTATG AGCATGACTTGGGATTACCAATAAATGAAATAATAATTGAAATAACTGAGTCACTTGTGCCTTCTGTAGGTCTGGCATAA TTATAGCTTCGACTGTCATGTTATAGAGAATTATGGATTCAAAGTTTCTGGTTTTCACGCTGATACAATGCACATGGCAC GATTATGGGATTCATCAAGACGTTTGGATGGGGGTTATTCTCTTGAAGGACTTACTAGTAACAGAAGGGTGATGTCTAGG GCTCAGCTTAACCATGAAAAGGATTTGATTGGAAAGGTGTCAATGAAAACTATATTTAGTAAGAACAAGGTGAAAAAAGA TGGATCTGAGGGTAAAGCAACTACCATTGCGCCTGTTGAAGAGTTACAGAGAGGTGAGCGTATACCTTGGATATGTTATT CTGCCTTAGATGCTAGAAGCACTTTGAAGCTGTATGAGAGCCTGAAGAGCCATCTTTCAGACATGCCCTGGAAATTTGAT GGCCTGCCAGTTAATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGGCCATTTGGAGAACTTCTAGTCATAAT GGAATCTGAGGGAATGCTAGTTGATCGGTCATATCTTCAAGACATTGAAAAAGTGGCCAAAGCAGAGCAAGAGGTAGCGG TTGATAGATTCCGGAAGTGGGCATGTAAGTATTGTCCCGATGCCAAGTATATGAATGTGGGAAGTGATTCACAGTTGCGC CAGCTGCTTTTTGGTGGTACTGTGAACAGGTGCACATTTTTTAAATTCATCATGGACCATTTGTTTAAAATTTTAATCTT AATAATTTGATTTGATGTTACTCAAAGTTTGAAATAGTTATCATGCAAACTATATGATAATCATAGGTTTAATGTATTCA TGAATGTTAAGACCTAGTTTGGTGTTTTTATTTGCATGTTGATTGAGCTCATGAAGGGAAAAAGTTACAAATTTTTATGA ACTCTGCTGTTTTTGACAAAGTAGCTGAAAAATTTTGAATGAAGTGAAAATAACCCACCATGTTCATCATTGCAGAAAAG ACTCCAATCTGGCACTTCCAACTGAGCGAACTTTCAAAATTCCGAATGTTGAAGAAGTGGTTGAAGAAGGAAAGAAGGCT CCCAAAAAATTTCGTGATATAATGTTGAGTAGCATAGGTTGTAACCTTGAGACAGAGATGTACACAGCAAGTGGTTGGCC ATCAGTTAGTGGTGATGCGTTAAAAGCACTGGCTGGAAATATTTCTGCTGAATATGACGTTATTGATGAGGCTGGTAACT TGGATCTTGATGGTAAAGATGGGAATCCTTCTCAAAGTCATATTGCAGCTGCTAAGTTTGATAAATCTTCATATGGAACA GCTTTTGCAGCTTTTCCAACAGAGGAAGAAGGGAGAGAGGCTTGCCATGCTATTGCTGCTTTATGTGAAGTCTGTTCCAT AGACTCTTTGATTTCTAATTTCATTCTTCCCCTCCAGGTAATTTTTAATTGAAAGATTTTCAATCATTTCTAATGGAATT GATATTACTGTATAGATAGAGCTTGAATTGGTCCAAGAACTTTGTAGTAAAAATAAATAGAGTTGATAAAGTATTTAAGC TATAACCTCATGCATCTATAATACGTAAATGTGTTTTCAATTTGAATCTTGTTGTGCTTGTTTTAAAGCTTTCAAGGTGT CAGCTTTCATTATGAAACCAGTGCAACAAAGTTCCATGTAATATATTATCTCCAAAAGAAATTAATGATATTTTCTTGGT TACATTGTTTTTACTGAAGAGTATACTCAACCTTGCATACCCCTAACTAATTTTCCATTCTTTTAAATCCTAACACTCCA GCACCCACCTTTATTTCCTAGGCCAGGGTGAATTTTTCATTGGCAGCTACTTATATTTAAATACTTAACAACAACAACAA CAACAACAACAACAACAACAAAATGCTTATCCCACTAAGTGAGGTTGGCTATATGGATCACACTAAGCCATTGAGCTCAA CAAAAAACCAGATCTTGAGGGATATTATTGATAATGAAGTACTCCCTCCGTTCCTAAATATAAGACCTAGTTTCAAAATT TTGAAGTTCCTAAATATAAGACCTAGTTACAATAATCTAACAAAAGGTTTTGTACTCTTCCAATTTTACCCTTCACATTA ATTATATGTTTTCAATTCCAAAGTTACCACCTACCATTAATTACTACTAATCCAACTAAATATGACTTTTGGGATATCAA TGGTGAGTGCATAACAAAGGTTAAATAAGGAAGAATGTATGCTTTTTTAAAAAATCAATACAATAACTAGTCACATTAAG TGCTTCCTTAATAAGCGCAATTTTTTGAAATAGGTCTTATATTTAGGAACGGAGGGAGTAATTTTTAACGATATCTTCCC ATGTTCCTCCTTCTACCCTTTTCACAGGACTAAAGACCATCATGTTATCAACCCTTCTCACTGGTTCATCCCAAGATCTT TGTACATGTCAATAGTATTGATTTTCCGTCTGCTTCTCTTCGATAGGCTCCACCCTAATATCTCCTCTTATACGATCATT GCATATCTTATCCTTTCTAGTGTGACCACTCATCCATCTCAACATTCTCATTTCTGCTTCACCAACTTTTTTCTCATGTT GTCCTGTTAAAGCCCAACATTCGCTACCATAGAGGATAACAAGTCTTACAGCGGTTAGGTAAAGCTCTAGACATTTATAT AAAATCATCAGCCAATGAAATGCTTGACAATTGACCTCTGTACCAAGCTCATAATGGTGTACCATAGAATAGCACCTCCC CCAAAATTTTAAAATTCTTATAGCATAGAGTCAGTATTAGACTCTTAGTTCTCTCACCGCTTTCCTAGGGTAATTACTAT TTCCTTAGTCCTTACCTGACTGAGCTAGTTTTTCTTTGCTAACTGCTTCGTATGCCACTACTTATTTATTAGTATTTTGA TCAAGTATATCTATTTTAACACTGAATTTGTTATACCTGGTTTATGTTAGCTTCATAGTTTCTCTATGTCAGGAATATAA TATATCAGGAAAGGATCACCGTGTTCATTGTTCCTTAAATATCAACACTGAGACAGGACGCTTGTCGGCAAGAAGGCCCA ATCTACAGGTTATTCTAATTTGCAAGATATGCTAGAATTCTCTTAATATTTTGATTAGGATATTTCATTTTAATGTTAGT TGTGAAAATGAAGTTTTTTTAAGTCCTGCTCCTTTTTAAGTACTACATGAATATTTGATCTCTACTTGGTCTTTATACCT TTTCATCTGATTTCACAAGTTGGACTGCGCTATGCATTTCTGTATGCTGACATTCTCATATGGGTATTACATGTTCTAGA TTAATCATTGACTTATAAAAGGTAGAGACTTAATCTAATACATAACATTTCATGAAATAGAATCAACCTGCTTTAGAAAA AGACCGATACAAAATCCGTCAAGCATTCATAGCTGCTCCTGGGAATTCTCTTATAGTTGCTGATTATGGGCAGGTTAGTA GTTTATATGGTTGTCTATTTGAGCTATTTCCTACAAATTTCATTCTGTTAATAACAATGTTATGTATTGCCACAGCTGGA ACTTAGGATTCTTGCACATCTTGCCAGCTGTAAGAGCATGTTGGATGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGAA CTGCAATGAATATGTACCCATATATTCGTGAAGCAGTTGAGAAGAAACATGTGCTTCTTGAATGGCATCCTCAGCCTGGT GAAGATAAACCTCCAGTTCCTCTATTGAAGGTAAATTGTCTGCTGATGATAGTAAATAATCTTTGCTTTAAATTGTGCAA GTATTGGCTCTCTCTTTAGTTTGGTATGCCTTGTAAGTTGTAACTGATAGCATCAGATATAGTGAGCTCCAGAGTGCTTG CATTGCTTCCATCAAATGCAAATACAATAAAGATACTTTATTAAAAATTAGAACAAAGACCCTGAGGCTTATGAATTCTT CAATAGAATTACAGTAGAGCTACTGCACATTGGAATACTCTGTTAAGCGGGAAACATTGAATGTTGCACTCATAGGGGGA TTGCATTTTATTTATGATGGGCTTCGAAATATGTATGAAAGCTAATTGAGTTTGTAAATCTATAATGTATTTAATTTATG ATGGGCTTCCAAATATGTATGGAAGTTAATTGAGTTTGTAAATGTATAATGTATTTAATAATGTTTATGCATATTAATAA AAGTAAATCAAATACTATAGGCCTAGGTAAGCTTGTTAAGGTGATGCCCTTCCCACAAAATATGGAAAGCTTGCATTAGC AGTTTTTACCATTATAACCATCTGTTCAATAACTTGGTCATGATTCTATTTTGTACTTTTTTCCCCTGAATTACAGGATG CCTTTGGTTCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGGGAAGACTCCAGTGGGGCTTTCCAGG GATTGGAAGGTAATTCAATTTCTTGTGATGAGGGATTTATAGAGGTTGTAAGGCGCATGGTTTATTATTTGCTTGTCCAA AAAGGGTCACATATGTTTTTCTCTCAGGTTTCTGTGAAAGAAGCTAAGAAAACAGTTGACCTTTGGTACAACGACAGAAA AGAAGTTTTGCAATGGCAAGAGGAGCGTAAAAAAGAAGCTCGCGAGTTTCATTGTGTTCACACATTGCTAGGGCGAGCCC GGCGGTTCCCTTTGATGGCCCAAGCTAACACCTACCAGCAAGGTCACATTGAGCGAGCTGCTATTAATACTCCAGTGCAG GTCATTAATCTTTCAAATAGACTAATACTATAACATGCCCCCCCCCCCCCCCCCGGGTGTTCATTAAACTATCACTACAC AGTCTATAGGATCACCTTACACTTACAGTGAAGTGCACACAATTGTTTATTCACCCACAATAAAGATGAAAAACTCATAA TAGAGTAGGTGAATAGTGAGACCTTGTCAATTAAGTGTGTTTGGATCAGCCTCTTTTTTTAGAATCAGTTCTGGCACCAA GAAGCTACTTGTAGAAGAATTTCCAAACACGCACTAAAACTTGACAATTCCTATATGATCCAAAGTTTAGGATTCACTTC GTTTATCTTATAATAACCTGGTCCTTTCAGTTGAGATGCCATTAGTTCAACTTAAGTCCTTTTTTTTATGGGTTTCTGAT TTGTAGAATGCAACAGGGTAGTGCTGCTGATGTTGCCATGTGTGCCATGTTACAAATTTCTAATAATAAACGGTTAAAGG AGCTTGGGTGGAAATTACTTCTACAGGTAATTTTATGCCTCAGTTTCTGCTCTTTTCAATTTCCTTGCTCACTTTTGTTG GTGTAAATATAAGGGGTGTATCAACTGAGAGGTAAGATGGAGTGAGAATTGACTATACAACCATACATAGATGGTCAGGA TTGGTTTCATCGAAATTTAATCTTGACCATTCAATTTAAGCATCCATATAAAATTGAATGGTCAATATTAGCTTTTCTCA TGTGCTCACGCTCTTGTGATACTGTGTTTGTCACGCACACCCATCTATGTACCCTTGTAGTACATACTCTTCCATCTTTA AGCAATATACCTGACCTGTATGGTAGCTGACTAGCTAGTAAGTTATTTCTAATTTTAGTTTTAAAAAAAATCGAAAAAAG AGAATAATTGTCACATTGTGAGAGTGGATGAGCTGACTCTTTACTGCTTTGAGGAGACTGAATTTGCTCTCAAGTTTAGT TGCTATTTTCTGATATTCAGGATATTTGAAATCTGAATGTTTTTGGATATCTTTGACATGCTTCCGTGATAATCTTGTTA AGATTTTTTGATATGACAAAGCAGGTTCATGATGAAGTCATATTGGAAGGACCAACTGAATCAGCTGAGGTTGCAAAGTC TATAGTTGTTGAGTGCATGTCCAAACCCTTTTATGGCAAGAATATTCTTAATGTTGATCTCTCTGTTGATGCCAAGTGTG CTCAAAACTGGTACTCTGGAAAGTAG
CDS sequence (LotjaGi4g1v0197800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATGGCACGATTATGGGATTCATCAAGACGTTTGGATGGGGGTTATTCTCTTGAAGGACTTACTAGTAACAGAAG GGTGATGTCTAGGGCTCAGCTTAACCATGAAAAGGATTTGATTGGAAAGGTGTCAATGAAAACTATATTTAGTAAGAACA AGGTGAAAAAAGATGGATCTGAGGGTAAAGCAACTACCATTGCGCCTGTTGAAGAGTTACAGAGAGGTGAGCGTATACCT TGGATATGTTATTCTGCCTTAGATGCTAGAAGCACTTTGAAGCTGTATGAGAGCCTGAAGAGCCATCTTTCAGACATGCC CTGGAAATTTGATGGCCTGCCAGTTAATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGGCCATTTGGAGAAC TTCTAGTCATAATGGAATCTGAGGGAATGCTAGTTGATCGGTCATATCTTCAAGACATTGAAAAAGTGGCCAAAGCAGAG CAAGAGGTAGCGGTTGATAGATTCCGGAAGTGGGCATGTAAGTATTGTCCCGATGCCAAGTATATGAATGTGGGAAGTGA TTCACAGTTGCGCCAGCTGCTTTTTGGTGGTACTGTGAACAGAAAAGACTCCAATCTGGCACTTCCAACTGAGCGAACTT TCAAAATTCCGAATGTTGAAGAAGTGGTTGAAGAAGGAAAGAAGGCTCCCAAAAAATTTCGTGATATAATGTTGAGTAGC ATAGGTTGTAACCTTGAGACAGAGATGTACACAGCAAGTGGTTGGCCATCAGTTAGTGGTGATGCGTTAAAAGCACTGGC TGGAAATATTTCTGCTGAATATGACGTTATTGATGAGGCTGGTAACTTGGATCTTGATGGTAAAGATGGGAATCCTTCTC AAAGTCATATTGCAGCTGCTAAGTTTGATAAATCTTCATATGGAACAGCTTTTGCAGCTTTTCCAACAGAGGAAGAAGGG AGAGAGGCTTGCCATGCTATTGCTGCTTTATGTGAAGTCTGTTCCATAGACTCTTTGATTTCTAATTTCATTCTTCCCCT CCAGGAATATAATATATCAGGAAAGGATCACCGTGTTCATTGTTCCTTAAATATCAACACTGAGACAGGACGCTTGTCGG CAAGAAGGCCCAATCTACAGAATCAACCTGCTTTAGAAAAAGACCGATACAAAATCCGTCAAGCATTCATAGCTGCTCCT GGGAATTCTCTTATAGTTGCTGATTATGGGCAGCTGGAACTTAGGATTCTTGCACATCTTGCCAGCTGTAAGAGCATGTT GGATGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGAACTGCAATGAATATGTACCCATATATTCGTGAAGCAGTTGAGA AGAAACATGTGCTTCTTGAATGGCATCCTCAGCCTGGTGAAGATAAACCTCCAGTTCCTCTATTGAAGGATGCCTTTGGT TCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGGGAAGACTCCAGTGGGGCTTTCCAGGGATTGGAA GGTTTCTGTGAAAGAAGCTAAGAAAACAGTTGACCTTTGGTACAACGACAGAAAAGAAGTTTTGCAATGGCAAGAGGAGC GTAAAAAAGAAGCTCGCGAGTTTCATTGTGTTCACACATTGCTAGGGCGAGCCCGGCGGTTCCCTTTGATGGCCCAAGCT AACACCTACCAGCAAGGTCACATTGAGCGAGCTGCTATTAATACTCCAGTGCAGGGTAGTGCTGCTGATGTTGCCATGTG TGCCATGTTACAAATTTCTAATAATAAACGGTTAAAGGAGCTTGGGTGGAAATTACTTCTACAGGTTCATGATGAAGTCA TATTGGAAGGACCAACTGAATCAGCTGAGGTTGCAAAGTCTATAGTTGTTGAGTGCATGTCCAAACCCTTTTATGGCAAG AATATTCTTAATGTTGATCTCTCTGTTGATGCCAAGTGTGCTCAAAACTGGTACTCTGGAAAGTAG
Protein sequence (LotjaGi4g1v0197800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMARLWDSSRRLDGGYSLEGLTSNRRVMSRAQLNHEKDLIGKVSMKTIFSKNKVKKDGSEGKATTIAPVEELQRGERIP WICYSALDARSTLKLYESLKSHLSDMPWKFDGLPVNGKTMYDFYNEYWRPFGELLVIMESEGMLVDRSYLQDIEKVAKAE QEVAVDRFRKWACKYCPDAKYMNVGSDSQLRQLLFGGTVNRKDSNLALPTERTFKIPNVEEVVEEGKKAPKKFRDIMLSS IGCNLETEMYTASGWPSVSGDALKALAGNISAEYDVIDEAGNLDLDGKDGNPSQSHIAAAKFDKSSYGTAFAAFPTEEEG REACHAIAALCEVCSIDSLISNFILPLQEYNISGKDHRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAP GNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYPYIREAVEKKHVLLEWHPQPGEDKPPVPLLKDAFG SERRKAKMLNFSIAYGKTPVGLSRDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEAREFHCVHTLLGRARRFPLMAQA NTYQQGHIERAAINTPVQGSAADVAMCAMLQISNNKRLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVECMSKPFYGK NILNVDLSVDAKCAQNWYSGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 139 | 139 | 5.8E-9 | ||
| PANTHER | 1 | 661 | 661 | 0.0 | – | |
| PANTHER | 1 | 661 | 661 | 0.0 | ||
| SUPERFAMILY | 120 | 659 | 540 | 2.45E-98 | ||
| CDD | 254 | 658 | 405 | 0.0 | – | |
| Pfam | 326 | 454 | 129 | 8.8E-29 | ||
| PRINTS | 358 | 380 | 23 | 5.9E-29 | ||
| Gene3D | 366 | 657 | 292 | 4.0E-75 | – | |
| PRINTS | 381 | 396 | 16 | 5.9E-29 | ||
| SMART | 391 | 621 | 231 | 1.5E-53 | ||
| PRINTS | 403 | 426 | 24 | 5.9E-29 | ||
| Gene3D | 412 | 581 | 170 | 4.0E-75 | – | |
| PRINTS | 433 | 446 | 14 | 5.9E-29 | ||
| Pfam | 481 | 658 | 178 | 1.0E-43 | ||
| PRINTS | 574 | 590 | 17 | 5.9E-29 | ||
| PRINTS | 604 | 617 | 14 | 5.9E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA-dependent DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. |
Expression pattern of LotjaGi4g1v0197800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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