Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288400 |
| Transcript ID | LotjaGi4g1v0288400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|G7JGN9|G7JGN9_MEDTR Signal recognition particle receptor protein, putative; Found in the gene: LotjaGi4g1v0288400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66065208..66069654) extracted from Lotus japonicus Gifu genome v1.2.
CTCCATTAACAAAAGAAAAAAAAATCGTGTTTTACTTATTTAGGTGTCAACATCAGATTGGCGCCAAGTTGTAGAAACCG TGGGTAATTTCGGTTAAACCGTTTCAACTCGCAGGACTAGCCACCGCCGGATTGGGGTCCACTAAGTCAACGACGGCGCA CGCGGCATACGAATCTAGCACATGCCACCGTCTTCTTCTTCATCTTCTGATATCCACCATCACCCAAACCAAACCAAACA AACAAACCTAACATTTAACCCCAAATTCAAATTCCAATTCCAATTTCAATTTCAAAATTCACAGAACCTTCACTCCAATC TGAAACTCAACCATGTTAGAGCAGTTGCTGATTTTCACAAGAGGAGGATTGATCCTATGGAGTTGGGGAAACGCGTTGAA GGGATCACCGATCGACACGTTGATCCGATCCTGTCTTCTCGAGGAGCGATCCGGTGCGGCATCGTACACGCATGACTCCT ACTCCCTCAAATGGACCTTCCACAATGATCTCGGCCTCGTCTTCGTCGCCGTCTACCAGCGCATTCTCCACCTCTTGTAC GTCGACGACTTGCTCGCCGCCGTCAAGCGCGAATTCTCGCTGATCCACGATCCCAGCAAGAAAACGCTCTACCCAGATTT TGATGAGACTTTCCGGCAGCTCAAGATCGAAGCCGAGGCTCGCGCCGAGGATCTGAAGAAATCGTCGAATGCCGTTACCG CAATTGGCGGCAACAGGAAGCAGCAAGCCGCGAACAAGGCTGGGCACGACGGGAAGAAGGGCGGTGGTGGTGAATTGAAG AATGACGGTGAGGGGAAAAAGGGGCGTAAACTGGAGAATGGTGATTCTGTTGTTGTTGCTAACGATTCTAACATGAGGAA AAGTAGTGTGAATGGTAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAAGCTACAGAAACTTAGGTCAA AAGGTGGGGATGTGAAGAAGAAGAAGATAACAGATAGTGTTGTTTCCAAGGTAGAGCCAAAGAAGGTGGTTAAGAAAAAC AGGGTTTGGGATGAGTCAACCCCGGAAACCAAGCTGGATTTTACGGATCAAGTTGGTGGGGGTGATGATGATGGGGATAG GAAAGTTGATTATTTGGCTAAGGAGCAAGGGGAGAGTATGATGGATAAAGAAGAGGTTCTTAGTAGTGATAGTGAGGAGG ATGATGATGATGATGTTGATGTTGGGAAGAAGAGCAAGCCTGATGCTAAAAAGAAGGGTTGGTTTTCCTCCATGTTTCAG AGGTATGATTCCTGAACTGGTGAAGTTAGTCTTTATATCTAGAATGTGGTTGCATTGCTTAGATTTATGTTATGTTATGT TATGTAGTTTACCTTATAGTATGGAATTGATGCAGTGGTGCTTGAAGTCCTGTAAAATGATACAAAGCTGTACATTGAGA TTGAATGTTCTACTTACTTTGTATGTTACGACTCTGTTGGTTGTTTCATTGTTTCCGTTCCATGAGATACCTTGACAATT GGATTGTTCTTATGAAGATTTGCTGCAGTCTGGTGATCGTAATAAAAATCATGGAATGGAGACTTCCATCCAAATTGGAG GGGAAGAAAAAGTGTCGTACTGGATGGAATGAGATAGAATTATGTCTTATTTCATTCCATCCTATTTTAAACAATCCAAC AATGAAACATTTAAGGATTTCATTTATTCCATTCCTTTCTATAAGCCCAAACATAATCTTAAGTCCCCGTTTTCTAAAAT CTAGAGATGATGTCTTGTTTCCATTTTCCTTTTGCTGGTATCTGCTGTGGTAAAGCTTAATTGTTGTGTTGTTTAGATGC AAATAACCATACACCTGCTACTTGAACTGCCTAATTCTAGAACTTTACTTTGATAACATAGCTTTCTTCTTTGTTTCATT TTTCATCTTTTCACTGAATTACTAATAAGAACACATCCTTGTACTCAGTATTGCTGGGAAGGCCAATTTGGAGAAGTCAG ACTTGGAGCCAGCTTTGAAAGCTCTGAAGGATAGGCTCATGACTAAGAATGTGGTATGTATTTATCCTTAACAGCATCTA AATGGTTATCCATCAGCTACTTTTTGCTCTTATTTAGCTGGCTAACATTGTTTACATTTTGTGTCACTTGCAGGCTGAGG AAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGAAAAAAACTGGCTTCATTTACAAGGATATCTTCA ACAGTGCATGTTTGTCTCTACTTTTTGCCCTATTGACATTTGATGCTGGCTTTTTCTGTATATAAAGACTTTTGTATAGG GATCTCATGATTAAAAAAATCAATGCAGGCAGCAATGGAAGAAGCTCTTGTTCGTATTTTAACTCCTAGGCGTTCTATTG ACATTTTGAGGGACATTCATGCAGCCAAAGAGCATAGGAAACCATATGTTGTTGTATTTGTTGGAGTTAATGGAGTTGGA AAATCCACTAATCTAGCCAAGGTGAAGGGAAATCATATTGCTTTTCCTATTTATTTAAGATTCCATCTGTTGGGTTGCCT TTTAACTGGAAGGAGGTATTCTATTTTGTGTGACTGTGTAGGTTGCTTACTGGCTTCAACAACACAATGTTAGTGTCATG ATGGCTGCTTGTGATACATTTCGATCAGGAGCTGTTGAGCAGCTACGGACACATGCACGAAGACTTCAGGTTCATATTGA TTTTACTGCTTAAAGCTTTGCACATAAATTCTTGCTTCACATCATTATCAGTTACTGGAAGCATATATCTTATATTTTCC CTTTTCAGATCCCTATCTTTGAGAAGGGCTATGAAAAGGATCCTGCGCTTGTGGCAAAAGAAGCAATTCAGGAAGCTTCA CGCAATGGTTCAGATGTTGTTCTAGTTGATACAGCTGGTCGTATGCAGGTAATTATTGCAGTTATTGCTCTAGTCAAGAG TTTAATGAGTTTATGAGTGTATATATACTTGGTGACTCCTTTTATACAATATTAGTTTTCTAGTCTTAGCTGTTGGGGTA GTGATTCCGTACAATGAACCTTTTATTCAATATAACAGTTTTCTAGTCTTAGCTGTTAGGGTAAATAAATCCATACTGTG AACCTTGCATTTATTTTATGTATACCGGAATAGAGGATCATTTCTCATAGTAGATTGGTTGAATTTATTTGTTTATATTT GAATTTGGAAACTATTGATCTTGCTCGATGCATTTAGTCTGACATGTCACTGCTTGTTTTCAGGATAATGAACCATTGAT GAGAGCACTGTCAAAGCTGATCTATCTTAACAATCCTGACCTGGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATG CAGTTGATCAGCTTTCAAAGTTCAATCAGGTTCGGTTCTGTATATTTAATATTTTTGTCCAAAACAATTTTCCTTTTTGT TTTTTTGGTTGGATCCACAATCTTGCTTTTGTTTCTGTTTTTCTTATATACAGTTATTGAACCCTTCTGTTTCATTGCAG AAACTAGCCGACCTCTCAACATCTCTCACACCCAGATTGATAGATGGGATCTTGCTCACAAAGTTTGACACCATAGATGA TAAGGTACGCAATTGCAAGCTCTAAAATTTCAAGTAAAACTTTGGCTGGGCATTTTGGTTTTCTTGATGAATATTTATGG TCTGCAAATGTTTCCTTTTATCAGGTTGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCAGTCATGTTTGTGGG TTGCGGACAGTCCTACACTGACCTCAAGAAACTCAACGTCAAGTCGATAGTGAAAACCCTCCTTAAATGAGGGAACATAG CATGTTTGGATTAGCTTCTCTTTTCTCATGATCAATTATTGAAGTGAGAAGCTACTCCTGGAAGTTTCTTCTGAGAATTG ATTTTGATTTCAGAATCAATTGGAGAAGAATTTCCAAACATGCACATAGTGAAAATCCTTCTTATATTTGTCTTGCTTGC TAGGGGTTTTCACCTGCTACCTCTCATGAATGTTTGTGTGACAATTTGACTTGCTTATCCCTGTTGATCCCATTACTCTG TTGGCCAAACTATGTGACTTTGGGTTTGTCTTTGGAGGCAAATTTGGTTTGTTTATATTGTTTAGGCAAAATTATAATTC TATTTAGTAGTATAAGTTAATAGATATCTGTAAGCATGGTCGACAGTTTTACAAAATGAAAAACACAAGATCTATCATTA CCTTTGCAGAGAAATGTTGGCAAATAGAAGTAATATGATATTTTTCTACGGTTAGATATGGAGATATGCGTTTCTCATCT TCATAACAAGATATACCTTCGGTTAACAAACGCTTATAATGGTACTATCAATCAAAGACCCAATAAGAATTGAATGTCCG GTCTCACTTTATTAATAATAATAACATGTGACACACAATTCAAAGTG
CDS sequence (LotjaGi4g1v0288400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGAGCAGTTGCTGATTTTCACAAGAGGAGGATTGATCCTATGGAGTTGGGGAAACGCGTTGAAGGGATCACCGAT CGACACGTTGATCCGATCCTGTCTTCTCGAGGAGCGATCCGGTGCGGCATCGTACACGCATGACTCCTACTCCCTCAAAT GGACCTTCCACAATGATCTCGGCCTCGTCTTCGTCGCCGTCTACCAGCGCATTCTCCACCTCTTGTACGTCGACGACTTG CTCGCCGCCGTCAAGCGCGAATTCTCGCTGATCCACGATCCCAGCAAGAAAACGCTCTACCCAGATTTTGATGAGACTTT CCGGCAGCTCAAGATCGAAGCCGAGGCTCGCGCCGAGGATCTGAAGAAATCGTCGAATGCCGTTACCGCAATTGGCGGCA ACAGGAAGCAGCAAGCCGCGAACAAGGCTGGGCACGACGGGAAGAAGGGCGGTGGTGGTGAATTGAAGAATGACGGTGAG GGGAAAAAGGGGCGTAAACTGGAGAATGGTGATTCTGTTGTTGTTGCTAACGATTCTAACATGAGGAAAAGTAGTGTGAA TGGTAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAAGCTACAGAAACTTAGGTCAAAAGGTGGGGATG TGAAGAAGAAGAAGATAACAGATAGTGTTGTTTCCAAGGTAGAGCCAAAGAAGGTGGTTAAGAAAAACAGGGTTTGGGAT GAGTCAACCCCGGAAACCAAGCTGGATTTTACGGATCAAGTTGGTGGGGGTGATGATGATGGGGATAGGAAAGTTGATTA TTTGGCTAAGGAGCAAGGGGAGAGTATGATGGATAAAGAAGAGGTTCTTAGTAGTGATAGTGAGGAGGATGATGATGATG ATGTTGATGTTGGGAAGAAGAGCAAGCCTGATGCTAAAAAGAAGGGTTGGTTTTCCTCCATGTTTCAGAGTATTGCTGGG AAGGCCAATTTGGAGAAGTCAGACTTGGAGCCAGCTTTGAAAGCTCTGAAGGATAGGCTCATGACTAAGAATGTGGCTGA GGAAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGAAAAAAACTGGCTTCATTTACAAGGATATCTT CAACAGTGCATGCAGCAATGGAAGAAGCTCTTGTTCGTATTTTAACTCCTAGGCGTTCTATTGACATTTTGAGGGACATT CATGCAGCCAAAGAGCATAGGAAACCATATGTTGTTGTATTTGTTGGAGTTAATGGAGTTGGAAAATCCACTAATCTAGC CAAGGTTGCTTACTGGCTTCAACAACACAATGTTAGTGTCATGATGGCTGCTTGTGATACATTTCGATCAGGAGCTGTTG AGCAGCTACGGACACATGCACGAAGACTTCAGATCCCTATCTTTGAGAAGGGCTATGAAAAGGATCCTGCGCTTGTGGCA AAAGAAGCAATTCAGGAAGCTTCACGCAATGGTTCAGATGTTGTTCTAGTTGATACAGCTGGTCGTATGCAGGATAATGA ACCATTGATGAGAGCACTGTCAAAGCTGATCTATCTTAACAATCCTGACCTGGTCTTATTTGTTGGAGAAGCACTGGTTG GTAATGATGCAGTTGATCAGCTTTCAAAGTTCAATCAGAAACTAGCCGACCTCTCAACATCTCTCACACCCAGATTGATA GATGGGATCTTGCTCACAAAGTTTGACACCATAGATGATAAGGTTGGAGCTGCACTTTCAATGGTTTACATATCTGGAGC TCCAGTCATGTTTGTGGGTTGCGGACAGTCCTACACTGACCTCAAGAAACTCAACGTCAAGTCGATAGTGAAAACCCTCC TTAAATGA
Protein sequence (LotjaGi4g1v0288400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEQLLIFTRGGLILWSWGNALKGSPIDTLIRSCLLEERSGAASYTHDSYSLKWTFHNDLGLVFVAVYQRILHLLYVDDL LAAVKREFSLIHDPSKKTLYPDFDETFRQLKIEAEARAEDLKKSSNAVTAIGGNRKQQAANKAGHDGKKGGGGELKNDGE GKKGRKLENGDSVVVANDSNMRKSSVNGKENESSNVGAFDVNKLQKLRSKGGDVKKKKITDSVVSKVEPKKVVKKNRVWD ESTPETKLDFTDQVGGGDDDGDRKVDYLAKEQGESMMDKEEVLSSDSEEDDDDDVDVGKKSKPDAKKKGWFSSMFQSIAG KANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALVRILTPRRSIDILRDI HAAKEHRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVA KEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSLTPRLI DGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SUPERFAMILY | 1 | 117 | 117 | 1.56E-34 | ||
| PANTHER | 1 | 614 | 614 | 4.7E-257 | – | |
| Gene3D | 1 | 119 | 119 | 4.4E-35 | – | |
| PANTHER | 1 | 614 | 614 | 4.7E-257 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| CDD | 3 | 110 | 108 | 3.43445E-46 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 615 | 594 | - | – | |
| Pfam | 25 | 292 | 268 | 3.1E-64 | ||
| MobiDBLite | 128 | 172 | 45 | - | – | |
| MobiDBLite | 141 | 169 | 29 | - | – | |
| MobiDBLite | 238 | 282 | 45 | - | – | |
| MobiDBLite | 238 | 306 | 69 | - | – | |
| Gene3D | 286 | 391 | 106 | 7.9E-26 | ||
| SMART | 306 | 388 | 83 | 0.0025 | ||
| SUPERFAMILY | 309 | 390 | 82 | 9.24E-12 | ||
| Pfam | 311 | 379 | 69 | 1.3E-7 | ||
| Gene3D | 393 | 615 | 223 | 1.9E-89 | – | |
| SUPERFAMILY | 406 | 614 | 209 | 1.68E-41 | ||
| SMART | 408 | 548 | 141 | 1.5E-9 | ||
| SMART | 409 | 615 | 207 | 3.8E-85 | ||
| Pfam | 410 | 614 | 205 | 3.8E-56 | ||
| CDD | 422 | 613 | 192 | 2.45261E-135 | – | |
| ProSitePatterns | 588 | 601 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Signal recognition particle binding | Interacting selectively and non-covalently with the signal recognition particle. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Signal recognition particle receptor complex | A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi4g1v0288400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…