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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0343500 |
| Transcript ID | LotjaGi4g1v0343500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72328181..72331712) extracted from Lotus japonicus Gifu genome v1.2.
CGGCTATAACATTTATTATTGTGGGGATCAAGTTGACCGGAACTTCTGCTATTCATATTGTTAAGATTGGAAACTAACCC ACTACTTTTTTTCTACCACTAACCGCCTCACTATGAATAATCATGAACATCTGCATTTGACACTTTACCTGTTCCTATTA TTATTGTTTTCATTCAATATCTTTGCTGCTGATTCAGTGAACATGGAGGATTGCAAGAATACCAGCCAGAGTTTTGAGGA AAGATGGCCTTTGCTTCAGACAGCTGTGGACAGACTCAACAACAAAATAGAAGGGACTGACAACTCAAGTTTCACATCTG AGGAGTACATGTCCTATTATAAGTATCCTTCACAAATTGCTGATTATTTTGCTTTCATTCTTGTTGGACTTAAGTTGTTT CACTTCTGTACATGTCAATTTATTTAGGCATGACTTGTATCAAGTGCACAAATTCTGCTTACCCTTCTCTGTATCTTGTG GATGGGATTGGGGAGTGTTTTTACTGTCTAACTGTCATGACTCATGAGAGACAGTTTTGTCCGAGTCAGGTATATCAAAA TTCTGGTAGGACTAGCTCTCTCTCTGTTAGGTTCTTTCCATACACAAGATTCAAACTCGAGGGAACCTTATTTTAAAGAA ATCAAACATGTACCATCTGAACCAACTATTTATTGTTTGTGCATGTGGAGTGTTTGGGAAATGCATAATTTGAACTACTA ATTTATTCATAAATTATTTTTAGTCATGTAAAGTATATCTGGATTTATAGTAACTTGAGAGTATCTTCACCGGAAATAGT ATACCTCCAGTCAATTTGGATGTTTACCATATAACATTTGTCAAGAAGTTTTTGCATTCAGTTTAATTTTAGCAATGTTT AATTCAATAACAATCCTTATTTTCCTTCTCTATACTGATATCCTAAGAATTTCCGCCTTTAACAGTCTTGTATGGTCTTA ACTTGGGTGTCTAGAACTGTTTATCTATTGTGTACAGACCACCCGCTGGGTGATGAAAATTCCAAGCTATTGTATGCCCA ATATAAGAAGGTCTTTCAAGAATATATCAATGCAACAGTAAGTCTAATTTTAATACTGTTTTTTACTAAAACTATTAATA CTAACTTATATAACCTTAGTTGTTCAATCCTCACATGCATCAAAAATTAGGCTTTTGTTAACTATGGAAGTTAAGATCCA ATAGTATAGATATGAGCAATGTTAATGTTAGCGATACACTTTTTTAACATACTTTTATACCCTCCCACCTTGCCAGATCA AGGGATATACCCTTCAACCAAGGTGCATGTCTCGGTAATGGTCGTGGAGACTACAAAAATGACAATAAAGAAGTGTGTTC TTAGCACTTGCATTTACATTATCATTGACATCTGACATGATTAAAATTAATAAGATTTTCTTATCACTAGGTTCTTCCAT CTTTGCAAGGAAAGAAAGATGGACTTTTGTTGAGAGAACTACTCATAAGATGGTCAAATTACAAAATTATGACCAGGTGG CTCGTAAGATTCTTTCATTATCTTGACAGATACTATATCCCTAGATGGGAGCTTCCTTCTCTCCAAGAAACTAGCTTCTT ATCCTTCTATGACTTGGTCTGTGATGAGATTCTTTAGAAAAGTTACACTTCAATTCTAATGTTATTTTGTTTTCCTTCAT ACCCTTTTTTTTAACTATTTGAGTTTACTTCTTTTTTGTGTCTCAGGTTCATGATAAGATCAACAAACAAGTCACCGATG CAATATTAGCTATGGTATTCTCTATTCCATTTTCATATGTACCATGTTTAAAATCTCATGTACTTGATTTATATTCGGTG AAAGAAAAAAAAATGGTGGACAGAAGCAACTTTCTTGTTTAATTCTATGATGAGGAACATGATAGTTGATTCTGTCCACC ATGATTTTGGCTACCGTGTACAAATAGCCTTAATCTTTTCCACTGTTCCACTTGATGGACATGTCTTTCAAAATGCAGCC ATAATTGTTATGAAACCTTAATTAGCCCTTGTCGGTTCCCCTGATTTTCATAGTAATGGCTTTTTTATCTTCATTTTCTG GTATCCAGATTGATGAGGAACATGCAGGAGAGAAGATTGATAGAACATTGGTTAATAACACGCTGGCCATGTACTCGGAG ATTGGAGATATCCTAAGAAAAAACAATGCAAACCACTTCATAGAAAGAATGATTAAAGAGCATGCAGCATCCTACTATGA TGAGGCTTCAAATTCGATAGCAAGTTCTTCCTTTAGGGATAACACACCAAAGGTGATTTCAGTTAAATTTGTTTTTTTTA TTGAAGATAAACTTAAAATTACAGTAATTGAAAGGTCAATGTTTTATTGTTCTGAATGGCATGCTTGGTTTGAAACATGC ATTTTGAAGCAATTCCCTTACATTTTTGCTACTCTCCACCTTGATTTGTACATTATTGTGGTTTTTTACCATGTATTCAA ACGTGCACTTAATCTTGTGTGTTTGAAAACTAGACCGAGTTATAAGGATGACATTGTGTACCTCGCACCTTATTCTCAAA ATTACTTTCCAGGCGATCGAATTTCTGTCATCACCCTTACGAAAATCTAACATGTTTAATACTAGACCAATATTTTGTTG GTGTAATCAAAATAAGTTTATTGAAGATTACACCTTTTTTTTTTACACAAATGTCAATTTTACATCATGGTAAAATAACA CATTTGGTTGCAGGAAGAGAAATTGCATGACATTCCAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGTG ATGTGTTTGAAGTTGACTATGGGGTAGCACTCATGTCAAAAATCATTGAAGATGTTATTAAGGCCAAACCTGCTGGTGGC AGTGACAGCATTCTTGTCTCTACAGTGAGTAGCAATATTTTGGCCAAGGTCATTGAATACTGCAAGAAGCATACTAAAGC TTCCAATTTCAATCACAAGGAAGACATGTCAGGTGTTGACATCAAAAATTGGGATTCTAAATTTGTTGAGGTTGACTATC AAACTCTATTTGATCTTCATATGTCAGCAAACTACTTGAATATCAAGAGTCTGCTAGACCTGACAGGCACTACAATAGGA GACATGATAAAAGGGAAAACTCCAGAAGAAATACGCCAGATGTTCAACATTAAGGAAAACTAGGACCCATTTCATAGTGT CATGACATTTTCCAGCTTAATTTAATGCTATGGAATATTTCATGTTGATGTACCTGCTTGGTTCACAATTTCAAGGTGTG TCGTTGAAACAAGATATAAAACTGGTTTAATTTTGAAATTTCAACAGGGTTATTTATGTGCAGATAGCAATTTATATCAG CTTCCTCTAAAGCTGAAGTTGCAGAAGCTTAGGAAATTGCTTCAAGATCTTTTAAGAGCTATAAAAGTCATAAGTTGATA ACAGAAGCTTGGATCATAAAAGTCATAAGTTGATAAAAAGAAGTTTATCCAAACACCACTCTTGAATAATAAAAGCACTG AACTTAAAGGAG
CDS sequence (LotjaGi4g1v0343500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAATCATGAACATCTGCATTTGACACTTTACCTGTTCCTATTATTATTGTTTTCATTCAATATCTTTGCTGCTGA TTCAGTGAACATGGAGGATTGCAAGAATACCAGCCAGAGTTTTGAGGAAAGATGGCCTTTGCTTCAGACAGCTGTGGACA GACTCAACAACAAAATAGAAGGGACTGACAACTCAAGTTTCACATCTGAGGAGTACATGTCCTATTATAAAACTGTTTAT CTATTGTGTACAGACCACCCGCTGGGTGATGAAAATTCCAAGCTATTGTATGCCCAATATAAGAAGGTCTTTCAAGAATA TATCAATGCAACAGTTCTTCCATCTTTGCAAGGAAAGAAAGATGGACTTTTGTTGAGAGAACTACTCATAAGATGGTCAA ATTACAAAATTATGACCAGGTGGCTCGTAAGATTCTTTCATTATCTTGACAGATACTATATCCCTAGATGGGAGCTTCCT TCTCTCCAAGAAACTAGCTTCTTATCCTTCTATGACTTGGTTCATGATAAGATCAACAAACAAGTCACCGATGCAATATT AGCTATGATTGATGAGGAACATGCAGGAGAGAAGATTGATAGAACATTGGTTAATAACACGCTGGCCATGTACTCGGAGA TTGGAGATATCCTAAGAAAAAACAATGCAAACCACTTCATAGAAAGAATGATTAAAGAGCATGCAGCATCCTACTATGAT GAGGCTTCAAATTCGATAGCAAGTTCTTCCTTTAGGGATAACACACCAAAGGAAGAGAAATTGCATGACATTCCAACCCC TTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGTGATGTGTTTGAAGTTGACTATGGGGTAGCACTCATGTCAAAAA TCATTGAAGATGTTATTAAGGCCAAACCTGCTGGTGGCAGTGACAGCATTCTTGTCTCTACAGTGAGTAGCAATATTTTG GCCAAGGTCATTGAATACTGCAAGAAGCATACTAAAGCTTCCAATTTCAATCACAAGGAAGACATGTCAGGTGTTGACAT CAAAAATTGGGATTCTAAATTTGTTGAGGTTGACTATCAAACTCTATTTGATCTTCATATGTCAGCAAACTACTTGAATA TCAAGAGTCTGCTAGACCTGACAGGCACTACAATAGGAGACATGATAAAAGGGAAAACTCCAGAAGAAATACGCCAGATG TTCAACATTAAGGAAAACTAG
Protein sequence (LotjaGi4g1v0343500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNHEHLHLTLYLFLLLLFSFNIFAADSVNMEDCKNTSQSFEERWPLLQTAVDRLNNKIEGTDNSSFTSEEYMSYYKTVY LLCTDHPLGDENSKLLYAQYKKVFQEYINATVLPSLQGKKDGLLLRELLIRWSNYKIMTRWLVRFFHYLDRYYIPRWELP SLQETSFLSFYDLVHDKINKQVTDAILAMIDEEHAGEKIDRTLVNNTLAMYSEIGDILRKNNANHFIERMIKEHAASYYD EASNSIASSSFRDNTPKEEKLHDIPTPSSKKIRLVSSDGDVFEVDYGVALMSKIIEDVIKAKPAGGSDSILVSTVSSNIL AKVIEYCKKHTKASNFNHKEDMSGVDIKNWDSKFVEVDYQTLFDLHMSANYLNIKSLLDLTGTTIGDMIKGKTPEEIRQM FNIKEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 406 | 381 | - | – | |
| Gene3D | 30 | 173 | 144 | 1.4E-30 | – | |
| SUPERFAMILY | 39 | 251 | 213 | 1.57E-38 | ||
| PANTHER | 40 | 259 | 220 | 6.0E-69 | – | |
| PANTHER | 40 | 259 | 220 | 6.0E-69 | – | |
| Pfam | 48 | 249 | 202 | 3.4E-26 | ||
| Gene3D | 174 | 261 | 88 | 2.3E-9 | – | |
| Gene3D | 268 | 406 | 139 | 2.1E-45 | – | |
| SMART | 269 | 374 | 106 | 3.8E-30 | ||
| Pfam | 270 | 331 | 62 | 7.3E-17 | ||
| CDD | 271 | 389 | 119 | 1.14095E-35 | – | |
| SUPERFAMILY | 271 | 332 | 62 | 2.2E-13 | ||
| SUPERFAMILY | 344 | 405 | 62 | 9.42E-21 | ||
| Pfam | 375 | 405 | 31 | 1.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0343500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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