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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0351800 |
| Transcript ID | LotjaGi4g1v0351800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A151U9T4|A0A151U9T4_CAJCA 26S protease regulatory subunit 6B isogeny; Found in the gene: LotjaGi4g1v0351800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73048196..73051458) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATCTTCAGCGATGGTTTTGGACCCAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTA CCTCTACGGCGGCGATATTGCCTCCGACGAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCA TCGATATCCAGGAGGAGTACGTTAAGGATGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAA AGGATCCAGTCGGTTCCTCTGGTTATTGGCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTAC TGGATCCAACTACTATGTTCGGATTCTTAGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACC GCCATTCCAATGCTCTCGTCGATGTTCTTCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCA GATGTTACTTACAATGTTAGTTAGGGTTTTGCTTTCAATTTTCCCTAATTTCGGCTTAATTTTTTAATTGGAGATTGCTT GATTGATTATTAGGCTTAGTTGTTGTGGAAATTAAAATTTAGGTCTTGTGTTTGTTGTTTGAACTATTTGGGTATAATCA GAATCATGATAGGAAGAGGGCATTTTGCTTTGAGGGAAAGGGTAATGGTTAGTTTGCTGAGGAGGGTCATGACTGAATTT GTGTTTGTGTTACTTAGGGAGTGTGTTTTTGTTTTTCATTGGTGCAATTTTGGATTGATAGTTAGCCTCTCCCTCAGCAG CATGTGACCGTGGAAAATGTCTACTTTGTTCAGTAGAATTCAAGTGTCATGGGTTAATAATTGCAATATTGCAATACAAG CAAGAGAAGACTATTCCTGTTTCAAAAGTGAGAGTGAGAGCCATAGATAGATAGGGGGCGGGGGTTCCTGAGTTTTCCTG CTTCAGAAGTTATAGTGAGACACTGAGACCCATAGATGAGCTTGATTGGGGGAGGGGGTTCATTTGGTTCTTTATTGTAG CTTGGAATCCTGAATGCCAGAGGTTACAACTTACAATTCATTTAGTTACATGTTAAGTGCTGTTGGGTCTACCAGGTTGT AGAGCAGTAAAATAGGAACTTAAATACTAGGTCCATCATTCTGTATGGGCATGAATTTGGCCTTCCAAGAAATGAGATGG AGTGTAACAAGGAAAATGAAACCGATGGTGAAGTGTATATGATACGGGCAGTCAGGCACATTATTTCTGGAGCATAATTG GTTTTGGTCTAGCCAATGATACTGATACTAACAAGTATAAACATTTGATTTTTGTGGCATACTCCTATATTTGTTAGACC TCCTGTGTTGTGTGAATTCTCTTTCAATTTAAACTATTTTTTGTATGGCCTGTTGATATGGTTTTGATTTGTTTTAGGAC ATTGGAGGGTGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAGCTATACAAACA AATTGGTATTGATCCTCCTCGTGGTGTACTACTATATGGTCCCCCTGGCACTGGTAAAACCATGCTGGCTAAGGCTGTTG CTAATCATACCACTGCTGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGCGAGGTATCGATTTCA TGTCATTTGAATTTGAAGTGATGTTATTAATGTTGTAACTTTCTCTGTTTTATTAGTTTGCTTTTGTAGATTATGCATTT CAGGTTCACAATTATTGATGTTATTGTGCTCTTCATGTTTTGTACTTGTGTTTAAAGATTGTGGATCATCTGTCCACGAT CATAACTACGTAGTTCCTGAAATTTGTTGGGAGTTTCAAAAATTTTATTCTCTTCCTAAAAGATGAATTAATTGTTTACT AGTGGTTTGTTGCAACATCTTCTAATATTATCTACTATCTACGTTTCAGGGTCCAAGGATGGTTCGTGATGTATTTCGGC TTGCGAAAGAGAATGCCCCTGCAATTATATTCATTGATGAGGTTGATGCAATAGCTACTGCTAGATTTGATGCACAAACT GGAGCTGACAGAGAAGTACAACGTATCCTCATGGAACTTTTGAATCAGGTATCTTCAAAAAGTTATTTCTATCAGGTTCT TTGAATGTGTTTAACAATGCATTAATATGTGCTAAGCTATACTGAGTAACATTGATTTAGTCTTCCCTTATATTCTTTGA TTTGACTACTCAGCACTTCCTCTTTGGTTTTAGATATTCTCTGAAGTGCTGGTTTAACAGACTTTTCTTTGCTTCAGATG GATGGTTTTGACCAAACAGTGAATGTTAAAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGCTCTTTTGCG TCCTGGAAGGCTTGATCGCAAAATCGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGGCAAGTCTTT CACATTTCTTTCTGTTATAATTTCTTACTGAGTCAGTATTCCATGTTTATGCTCAACTATCATATTTTGAGAAGTTCCAG TTTGATTTGCAAACTTTCATTTGTTTTTATATTGAATATCGAATTATCTAATATTTTATTTTCAGCTGCTTTTCAATCTA TTATTTAATGGTTTATTTTTTAACAGGTTTGCACAGCCAAGATGAACTTAGGTGATGAGGTGGACCTGGAAGATTATGTT TCTCGACCTGACAAAATTAGTGCTGCGGAGGTTTGTTCATATCTTATCTGATAATTTTCACGATGCTAATCATTTTTTGT ACAAAGACTTTGTTACTAATTGCATGATCAGAAATGGTTGATTAATCTGTCGAATTTGTTTGAACTATTTTTGTTCTTCT CCTCCATCATCTTGCAAGAAGGCTTAAAGCAATTATGAAAGTGTTTTTCTTTAGGAGTTTTTGGCAGATTCATTCAGAAT CTCTTTGTTCAACAATTTTCTGATACATAGTTGAAGACTTGCGTACAAAATATGCTTTGCTTCTTTTGATAGTTTCATTT TGAATTGTTAACTGCTACCTGAAAGACTTGAGCTATTGTTTGTATTATATAAATGACATCAATTATTTCATGATTTTGGT TCCTGCAGATATCTGCCATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAAAATAGATATGTCATACTTCCAAAGGAC TTTGAGAAGGGTTATAGGACGAACGTGAAGAAACCTGATACTGACTTTGAATTTTACAAGTAA
CDS sequence (LotjaGi4g1v0351800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCTTCAGCGATGGTTTTGGACCCAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTA CCTCTACGGCGGCGATATTGCCTCCGACGAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCA TCGATATCCAGGAGGAGTACGTTAAGGATGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAA AGGATCCAGTCGGTTCCTCTGGTTATTGGCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTAC TGGATCCAACTACTATGTTCGGATTCTTAGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACC GCCATTCCAATGCTCTCGTCGATGTTCTTCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCA GATGTTACTTACAATGACATTGGAGGGTGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACA TCATGAGCTATACAAACAAATTGGTATTGATCCTCCTCGTGGTGTACTACTATATGGTCCCCCTGGCACTGGTAAAACCA TGCTGGCTAAGGCTGTTGCTAATCATACCACTGCTGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTT GGCGAGGGTCCAAGGATGGTTCGTGATGTATTTCGGCTTGCGAAAGAGAATGCCCCTGCAATTATATTCATTGATGAGGT TGATGCAATAGCTACTGCTAGATTTGATGCACAAACTGGAGCTGACAGAGAAGTACAACGTATCCTCATGGAACTTTTGA ATCAGATGGATGGTTTTGACCAAACAGTGAATGTTAAAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGCT CTTTTGCGTCCTGGAAGGCTTGATCGCAAAATCGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGGC AAGTCTTTCACATTTCTTTCTCTGCTTTTCAATCTATTATTTAATGGTTTATTTTTTAACAGGTTTGCACAGCCAAGATG AACTTAGGTGA
Protein sequence (LotjaGi4g1v0351800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSAMVLDPKPVSEPPPSFPSTKSGYLYGGDIASDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVK RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL GEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA LLRPGRLDRKIEFPLPDRRQKRLVFQASLSHFFLCFSIYYLMVYFLTGLHSQDELR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 342 | 342 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 27 | 348 | 322 | 1.4E-205 | ||
| PANTHER | 27 | 348 | 322 | 1.4E-205 | – | |
| Gene3D | 45 | 158 | 114 | 2.2E-28 | – | |
| TIGRFAM | 47 | 346 | 300 | 7.6E-119 | ||
| Coils | 58 | 85 | 28 | - | – | |
| Pfam | 89 | 144 | 56 | 5.0E-9 | ||
| Gene3D | 160 | 335 | 176 | 8.1E-70 | – | |
| SUPERFAMILY | 160 | 352 | 193 | 1.72E-56 | ||
| CDD | 168 | 335 | 168 | 7.73271E-29 | – | |
| SMART | 198 | 337 | 140 | 1.5E-23 | ||
| Pfam | 202 | 335 | 134 | 2.5E-44 | ||
| ProSitePatterns | 305 | 323 | 19 | - | ||
| Gene3D | 336 | 350 | 15 | 8.1E-70 | – | |
| Phobius | 343 | 366 | 24 | - | – | |
| TMHMM | 347 | 369 | 23 | - | – | |
| Phobius | 367 | 376 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. | ||
| Molecular function | Proteasome-activating ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
Expression pattern of LotjaGi4g1v0351800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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