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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0382400 |
| Transcript ID | LotjaGi4g1v0382400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Flap endonuclease 1; TAIR: AT1G29630.2 5'-3' exonuclease family protein; Swiss-Prot: sp|Q60GC1|EXO1_ORYSJ Exonuclease 1; TrEMBL-Plants: tr|K7L667|K7L667_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76113003..76118224) extracted from Lotus japonicus Gifu genome v1.2.
CGCGTGCCTCAAACCACGAAATGAAGATTGAAGAGTGTCGATTGCAGTGCAACGCAGCAGAATAGGTCACAATCTTGATC TCGAAGCTCGAACGAGCAATGGGGATTCAAGGTCTATTACCGCAATTGAAATCGATTATGGTCCCAATCCACATCAAGGA ATTGAACGGTTGTTCTGTGGCGGTAGACACCTATTCTTGGCTCCACAAAGGTGCCTTATCTTGCAGCACTGAGCTCTGCA AAGGGATACCCACAACCAGGTACCACTCTCCTCTCTTTTTCCCCAAATGGGTCGGTTTGTTTTCGACCTGGTGAGTTGGG TAACCCCATGAATTGGAAATGCTCCCAATGTTGCTTAATTCCAATGGGTCGGTTTGTTTTGGAGAATTGGGTAACCCCAT GAATTGAAAACGCTCCGAATGATGCTTAATTCAAATGGGTTTAATGCAAAATCCATCCTTTCAGTGTTTTCTTTATGATT ATTCAATTGGGGTTTTCTTAAATTTTTTGTCAGTGTGAAAAAGTTAGTGTTTTTTTATTATCTGTTTGTTTGTTTTGAAT GGGATTGGGTTCATGGGTGGAGATTGTTTTTATGTATTGTGTCTCAGGCATATTGAGTATTGCATGCGTAAAGTGAACTT GCTGCGCCACTACGGTGTTGAGCCGATTCTAGTATTTGATGGAGGTCTTTTACCCATGAAGAGTGAACAAGAGAACAAGC GTGCCAGGTAGATTTCACATGCCAAGAGAACATACTTTGTTTTTCTTAATTGATGTTGTCTAAGCATTTTTCTTTTGCAA TTATTTTCGCCAAAGAACTATGTTTTGTTGATTGTGTGATATGAATTTATATGTATGTTCTTATTTGCATTTCAGATCTT TTGTGTTTGAGTTGAAATTAAATGAACTTGGTTTCACGAATACTATAGAGAGCTGAATACTCCAAATGATTTAATTGTGA ATTTCATCATAATTCAATAGTACCTTGTCACAGGACCTGAATTTTTTAATTTCTCTTTTGATTATACGATAGGAAGGTAT AGGGGTTACACGCTTTGTTACAAGATTATCTAAGAGGAGTAGTTAGATTTCTGAGCAGGTTTAGGAACCTTAGAATCTCA CCATCCTTGTTGTTGTTGCACTTTTGCCAATGAAACAAGTATTTCTCTGCTATATGTGCAGGGCTAGAAAGGATAATTTT GCACGCGCAATTGAACATGAGTCTGATGGAAATTCTACTGCTGCCTTCCATTGCTACCAGAAAGCTGTTGATATTTCACC TCTAATTGCGCATGAACTCATTCAGGTAGAATGTTCAGTATATTAGAATTGGTCTAGTTTTTGTGAAGGAGATGATGGAC ACACACACACTCACATTTCATTGGGTGTATTAAATACAATGATTGCATCTTCTCCTAAATGGTTAACCTGTTTTTTCGCT GGTAGGTGTTGAAGCAAGAGAATTTACAGTATATTGTTGCTCCTTACGAAGCAGATGCCCAGATGACATTCTTGGCAATT AGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAGTGAGTTGGCCAGGCTT AAATTAGCATCTAAATGTCTTATGATGTTTGTATTGCTAGTATATGTTACTCCCTACTTTAGTATACTCTCTGGAGTTTG ACTGGCTTGTTTCTTCCTTTAAAATTTAGATTATCTTTAAAATGGACCAGTTTGGCCAAGGTGTTCAGTTTCAATATTCC ATGCTGCAAAATAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGCGGCTG TGATTATCTTCAGTCATTGCCAGGGATGGGTCTCAAAAAGGCTCACACAAGCATTAAAAGATTTAAAAGTTATGACAAGG TAAGCAAGGCTGATACAGTCCATAAGCCTGTTTATTCTCGCCCTATCCTACACAGTTCAAATGGGATTGCTCCATTTGAG TGATACCTGTAGGCCAATTAATAAAAAACTATCAAGCATGTTTTTAAACTACAAATGTTCATTTTCCATGTTTAAACTCA CTCAGCTAGTCAGGCACTCAGGCCTGCATCTCTAGTTCTATACACATAACATACATGCCATTTTTTTTGTAACTTTTTAT TTAAATCTTCTAGGTATTTTCTATATGAAATTTGTTGTGACCCTAATGCCAATTACAATGTATCAGGTTCTAAAACACTT GAGATACAGTGGTGTTTCTGTGCCTCCCTTTTACGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGG TTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATGTACCTGATGATATTGGTGATGAGTTAGACTTTTTGGGC CCATATCCTTCATTTCTAAGGTTTTCTTACTGTTTTGTATCTTATAACCCTGCTATATTTTTGTTCAATTATCTGAGATC TTACCTGAAATCATACCTTAACCTGGAATACACCCATGCCAAAAGATATAGCACAAGGAATTGCAAAGGGGGATATTGAT CCAATTACCAAAATTCCATTTAAGGTACATTATCAATTATTATTATAGCAATATCAATTTAGTTTTATTATTGAGTATTT TTTTCCTCAACTTCAACACTAACAAATGTTAAATATAAAGGTAAACATTAGACATGGAGGTATGCATATGCTCCTGCAAA CTCTCATAGTATTTTATTGTTTAAAGGTATTGTTGGTTGATGTCTATTTCTTTTTAAATGGCAGGGAGAGAATCTTATTT CCCCATCCGCAATTGCAGGAACATGTCAATTCAAAACTTCTCATTCTGAAACTGCGAAAAAAAAGATTGATCTACCGGTG CAGAATAATCTTTTGACCAAGTACTTTTGTATCCTCCAAGGCATTCTTCTCGTGTTGATTTTAATCAGTTGAGCATGTTT TAAAGGGCGAACTGGAGGGTTGCACAATTGCATTCCATATTTCCATGGTTCACAGGGATATTGCCTGCTGATGCCTGATG CTTTAGCTACCAATGTTCCCCAAATTTAGAAACCTTATTATATAACATTCAAAATAGTAAAAAAGAGGCAAGAAAATATA AATTTTGCAATAAATTATGGAGGTATTTATGCTCAAATATTGCTTTTTCACATTGCCAGTTGTCTTTCTTCTAGTACTCT TGAAAGTAATTTTTCCTTAGCCATGGAAGGTTTTGCATCTCTTGAAGCAAAAAGGAAATTCATAGCACCTAGGGTGTCAC TGTCACCTACTACTTTAAGTCAAAGTTCATTGGATTCCTCATCTGTCAGTTCCCTGGAACATGAGACTTTAGAAGCTGCT GCTAGTGAAACAAAGAACTCTGCTGCATCCATAGTTGACTCTGAAAATTGGAGCAATGACCCTCTTTCCAATAGCCATGT AAGTTGCCTGATCTAGTGAACTAAAATAGTGAAAGCTCTTAAACTCTTCTGAATTTTTTTAGCATATTCTTTCTTCAGAT TGAGAACAGTTTGACCACCAACATTTCTGAATTTATGGAATCTCCACATCATGGTAAGAATATAAACCTGCTAATTTATT TTGGATGGAAAACTGTAATCGATTGAGCCTTTTACATGTTTGTTGATGCTAATTTAATTGTCTATGTAAATTAAGTATCT ATGGCGAGTGAGAAGAGAAGTCCTGAACATACAAAACTGCAGCAGTCGAGGAATCCAATTCATAAACCTTGTCTGGCTTT GCATAAGGAGCATGAGCACACAAGTGTCCAAGACACAGTAGAACCAAAAACCAGGGAGGCAACGGGCAAGGTAATTGTAA GAAGTCGTTATTTTCAGCACAAGCAAGTAGAAAAAAAAGTTTGTGGTGAGAAACAAGATCACTTGTCGTCTGGCATTGTC ATTGATGGGAGACAAAATGCCATATCTGACAGTGATTTATGTAACGATCATTTGAAGAATAAAGACTTGAAAAGGAAGAT CTCCCCTAATGACCATACTCAAAATGTAAGAATTTTGCACTATTAGCTTTTTATTTTCTTTAGCCCTTACTCCTCTTATA TTCATGTACTAATGGCTTGAGTTTCTCCAGGAAAATTCGCAGCCCAGGCAAATGCATCCTGCTTCACCTCCTCATGACAA TGGTATAAAACAATGGGTTTCACCTTCACAAGTAAAAGTTATTTGATAGCTCATATACTGTTTCACCTTCACAAGTAAAA TAGCTAGAGGGAGGAAATGAGTATTTGAGTAGTTTAATATGCATATGCATGCTTCCAAAAGAATCATGCACAAAGTATCT CTGAGAAGTTTCTGACTTCGGATGTTTCCTGAATTTAGGTTTCTGTGATGACAAAGTTGATGGACCATTTGCAGAAAGGA GTGCTGAAGAAGAAAAATTTGGGACAACTATTTCCCATTTAAGCCATTATTCTCAAATAGCTGAGAAGTCTATGGATAGA TTTGAATCTGTGATATCGTCCTTTAGATGTTCTTCTGGTTCTCGTGTCAGCGGTCTCAGGGCTCCTCTAAAAGATGTTCG GAATACTTGTAATAATAGGTAATGTGCCTTCCATAATGCTGGAATCCATTGTCCCTTGGACCTTTTATTTAATCAACATG ATGATTTGTGACAATATATATACCTGCTTATCACAGGCCAACAACTGTGGACTTAAAGCAATATGCGTATGTGCCAAAAC AAAGGAAGAAAAGCAGAATAGCTCCTGGGAATTAATTCAAGTTGTTTAGCGGAAGTTGATTGAGGTTTATGTTGTAATTG TAACGTCATTCTACCGTAGCCAGGTTCTGGGCTGAGTTTAATGCTTCTTTGGCAGCTGTAAATTGTATTCTTGATCTAAC AACCTATTTGATTGGGATTGGGAATTAGTTATCCCGTGTTCTTCATGTAATAACACACCTAGGACAAAATTGGATCAAGT GCATTATTAAAAGTGGAAGCTGTGTTTGTATTTTTTTGGGTACCATGATGGGAAATGAGGTAAAGAGGTATGACCTCATG CAAACTACCCAACTATCTTATCACTGGTTCGATCATCATAGCTTATGTAAGCTTTGTTTTTAGCGGTTATCTTTACCAAT TGGATATCTCAGAACAAGTGCAGATCACTGTGTAATGTCTCTTATTTTTTCTCTTATTGATATCAGTTGAAAAAAATATG TTAATTTCTGCTTTTCACTTCA
CDS sequence (LotjaGi4g1v0382400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATTCAAGGTCTATTACCGCAATTGAAATCGATTATGGTCCCAATCCACATCAAGGAATTGAACGGTTGTTCTGT GGCGGTAGACACCTATTCTTGGCTCCACAAAGGTGCCTTATCTTGCAGCACTGAGCTCTGCAAAGGGATACCCACAACCA GGCATATTGAGTATTGCATGCGTAAAGTGAACTTGCTGCGCCACTACGGTGTTGAGCCGATTCTAGTATTTGATGGAGGT CTTTTACCCATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGAAAGGATAATTTTGCACGCGCAATTGAACATGA GTCTGATGGAAATTCTACTGCTGCCTTCCATTGCTACCAGAAAGCTGTTGATATTTCACCTCTAATTGCGCATGAACTCA TTCAGGTGTTGAAGCAAGAGAATTTACAGTATATTGTTGCTCCTTACGAAGCAGATGCCCAGATGACATTCTTGGCAATT AGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATTATCTTTAAAATGGA CCAGTTTGGCCAAGGTGTTCAGTTTCAATATTCCATGCTGCAAAATAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGAC AAATGCTTCTTGAAATGTGTATTTTGAGCGGCTGTGATTATCTTCAGTCATTGCCAGGGATGGGTCTCAAAAAGGCTCAC ACAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTAAAACACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTA CGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATT TGTCTAATGTACCTGATGATATTGGTGATGAGTTAGACTTTTTGGGCCCACCCATGCCAAAAGATATAGCACAAGGAATT GCAAAGGGGGATATTGATCCAATTACCAAAATTCCATTTAAGGGAGAGAATCTTATTTCCCCATCCGCAATTGCAGGAAC ATGTCAATTCAAAACTTCTCATTCTGAAACTGCGAAAAAAAAGATTGATCTACCGGTGCAGAATAATCTTTTGACCAAGT ACTTTTGTTTTGCATCTCTTGAAGCAAAAAGGAAATTCATAGCACCTAGGGTGTCACTGTCACCTACTACTTTAAGTCAA AGTTCATTGGATTCCTCATCTGTCAGTTCCCTGGAACATGAGACTTTAGAAGCTGCTGCTAGTGAAACAAAGAACTCTGC TGCATCCATAGTTGACTCTGAAAATTGGAGCAATGACCCTCTTTCCAATAGCCATATTGAGAACAGTTTGACCACCAACA TTTCTGAATTTATGGAATCTCCACATCATGTATCTATGGCGAGTGAGAAGAGAAGTCCTGAACATACAAAACTGCAGCAG TCGAGGAATCCAATTCATAAACCTTGTCTGGCTTTGCATAAGGAGCATGAGCACACAAGTGTCCAAGACACAGTAGAACC AAAAACCAGGGAGGCAACGGGCAAGGTAATTGTAAGAAGTCGTTATTTTCAGCACAAGCAAGTAGAAAAAAAAGTTTGTG GTGAGAAACAAGATCACTTGTCGTCTGGCATTGTCATTGATGGGAGACAAAATGCCATATCTGACAGTGATTTATGTAAC GATCATTTGAAGAATAAAGACTTGAAAAGGAAGATCTCCCCTAATGACCATACTCAAAATGAAAATTCGCAGCCCAGGCA AATGCATCCTGCTTCACCTCCTCATGACAATGGTTTCTGTGATGACAAAGTTGATGGACCATTTGCAGAAAGGAGTGCTG AAGAAGAAAAATTTGGGACAACTATTTCCCATTTAAGCCATTATTCTCAAATAGCTGAGAAGTCTATGGATAGATTTGAA TCTGTGATATCGTCCTTTAGATGTTCTTCTGGTTCTCGTGTCAGCGGTCTCAGGGCTCCTCTAAAAGATGTTCGGAATAC TTGTAATAATAGGCCAACAACTGTGGACTTAAAGCAATATGCGTATGTGCCAAAACAAAGGAAGAAAAGCAGAATAGCTC CTGGGAATTAA
Protein sequence (LotjaGi4g1v0382400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMRKVNLLRHYGVEPILVFDGG LLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFHCYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAI SRQVDAVITEDSDLIPFGCPRIIFKMDQFGQGVQFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAH TSIKRFKSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNVPDDIGDELDFLGPPMPKDIAQGI AKGDIDPITKIPFKGENLISPSAIAGTCQFKTSHSETAKKKIDLPVQNNLLTKYFCFASLEAKRKFIAPRVSLSPTTLSQ SSLDSSSVSSLEHETLEAAASETKNSAASIVDSENWSNDPLSNSHIENSLTTNISEFMESPHHVSMASEKRSPEHTKLQQ SRNPIHKPCLALHKEHEHTSVQDTVEPKTREATGKVIVRSRYFQHKQVEKKVCGEKQDHLSSGIVIDGRQNAISDSDLCN DHLKNKDLKRKISPNDHTQNENSQPRQMHPASPPHDNGFCDDKVDGPFAERSAEEEKFGTTISHLSHYSQIAEKSMDRFE SVISSFRCSSGSRVSGLRAPLKDVRNTCNNRPTTVDLKQYAYVPKQRKKSRIAPGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 639 | 639 | 6.7E-177 | ||
| CDD | 1 | 202 | 202 | 1.39916E-122 | – | |
| Gene3D | 1 | 207 | 207 | 2.9E-78 | – | |
| Pfam | 1 | 98 | 98 | 4.8E-23 | ||
| SMART | 1 | 99 | 99 | 1.1E-30 | ||
| PANTHER | 1 | 639 | 639 | 6.7E-177 | ||
| SUPERFAMILY | 2 | 226 | 225 | 2.65E-61 | ||
| PRINTS | 24 | 38 | 15 | 3.4E-29 | ||
| ProSitePatterns | 71 | 85 | 15 | - | ||
| PRINTS | 73 | 92 | 20 | 3.4E-29 | ||
| PRINTS | 137 | 154 | 18 | 3.4E-29 | ||
| SMART | 138 | 208 | 71 | 9.7E-18 | ||
| Pfam | 140 | 226 | 87 | 2.4E-22 | ||
| PRINTS | 158 | 178 | 21 | 3.4E-29 | ||
| Gene3D | 209 | 281 | 73 | 3.0E-22 | – | |
| SUPERFAMILY | 211 | 333 | 123 | 1.64E-23 | ||
| SMART | 213 | 246 | 34 | 1.3E-5 | ||
| CDD | 214 | 285 | 72 | 3.85728E-35 | ||
| PRINTS | 216 | 231 | 16 | 3.4E-29 | ||
| MobiDBLite | 461 | 484 | 24 | - | – | |
| MobiDBLite | 463 | 481 | 19 | - | – | |
| MobiDBLite | 565 | 606 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. | ||
| Molecular function | 5'-3' exodeoxyribonuclease activity | Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of a DNA molecule. |
Expression pattern of LotjaGi4g1v0382400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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