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LotjaGi4g1v0382500.5

Overview

Field Value
Gene ID LotjaGi4g1v0382500
Transcript ID LotjaGi4g1v0382500.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:76120049..76127246) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGGGGGGGAGATCTGAGATGACAATGTTGTCGCAGCCGCACTCCGATTACACTCATTGATTTTCTCTCTCTTCACAT CAAAATTCAAAACCCTATTCCCTTTTCCTCTTCGCGATTCCCATTGATTTCCCCTCAAGCTTCACTGTGCATGCTCTCGC TCTGAGACCATGCCTCGTAAAGTAAACTACGGACTCGATTACTACGAAGACGACGACTATGCCGACTACGACTACGATCT TGACATACAAGAACAACATGGTTAGTTTTACTTTTCAATTTACTTCTATCTGTATCAATTCTCATGTGTTAAATCCTTTT TTCTTTCTTTCTGTAGTAACAGGAGAAGGACCTGATACAAAGCAAGAGACCGTGAGACCTGGACTTTGGCCATGCCCCAT TTGCACTTATGACAACGATGACAGTATGACTACCTGCGATATTTGTGGTGTTGTACGTCATTCCTTTGTTAACATGGCAA CTTCTAACACTATCAAACCAGGTAATTCTGATAGATATGGGAACATGGGACTTGGAATATAAAGTTTATATATTCGTCTA GCTTTACTACAGTGATATGAACAAGTTAATAAGTGGAATCATATATACTCTATGTTAGATAAGATAAAAACTTATATGAA ATTCTGGTTTCTCTATGATGTCTTAGGCCAAGCATGGTGGTAGATGACAAAAATGGAGTTATTGAAATAAAGTTGTAGTT TCAGTGTAAATAATTGACTATCGTGATGCTACGGATATGATTTCTCAGTGTTTTTGGTCGTTTGTTAGGTAGTTTCCCCT TGCTTTTTTAGTAAATGAGGATAAGGATAAATATTATAAATTTCACTAAGAAAGGGCACAGCAGGAGGACTAGGAATCCT CAATGGAGGAAAAGCTAGAACAATAATAAAATTAAATAGGCAACGATAATAAGAAAATAAAAGAGGAATTTAATATCTTT GCATATCTGAAAAAAAAAAGAGTGCGGAGGGGGCATCGAAGAATATGAGAACTTGTTTCTGATGAACAGTGCTAAGTTAA GAATGATGGACACGGAATACCTATAACCTGTTGAACAATCTCTTTGATGCAGTTGAAGACATAAGCAAAACTCCTGGAGC ATCCAAGTTGGCCAGGTCTCTTTTTCAACCATTACCAAAACAGATTCCCAAAGAGCTTGAATTATTTCCTAAGCAGGATG ATGGTTTTCAGACAGGTGGCAGTGACTTCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTT AACACTCAAAGCCATCCCTATTTAAACATAGGTCTTCACAAGTCTTGATTCAGGATGTTAGAATCGTTTCTTCCATATTT GAGTCTTACATAATAGTAATTAGAATATAAGGTCTTATGAGTTGAGGTTCAGAATTTGTTTAATGACATTCTATGTTTTA GTTCCTGGAACTCCTTGCACATGAGAGCAAACCTTAATTGTTGTTATAAAACTATGTTTTTTCCAATGCACAGATTCTTT CAAGTTTGATGGTCCATCCCCAGATGATGTGGTTTATTCTGGCCTAAGTTCTTCAAAAAAGGGTCTGAAAGGTACCCCTC CCTCAACCAATCTGGTTTGCCTCCTGAGCTTAAGTTAGAGGAAATGTGATTAATTGTTGAGAGCTAGTGACCATTGTTTT GAATCTAAGAACTCATTCTTGCCCTTTCTCTGTGGTTTACTTTACCAATCATTTTCTAGAACCTCTAAATTATTTTCTTT TTTGGAGAGAGAGAGAGAGAGAGAGAGTACTAGAAAGGAAGTGAAAATTATGAGAGGATAAGAAGCACGTTTTGGTTAGA TTTTTAAGGGGAAAATTGCTTTTATTTTTCCTTTCGTCAAAAGTTCTCAGTAAACTTTTGATTATAAATTGTTTTAAATA CCAAAAAAACTAATCCAGGCTCTTACAAGTTATCCTCTAAAAGAGAAAACAATGATGAAAGAAGAAAAAACCTTGAACAG GAAAACAGCTTAAAGAGAAAACTTCAAAAAAACTGGAGACTGAGTAACCAGGACAAGTCAGGAGATGTAGAAACACTACA CGGGGGAGAGAGAGAGAGGAAATGGAAGCAAAGGAAAAACTCAGTTACCATTTGTGCTCTCCCTGACGTGTCTCTGCCTA AATTTTCTGTAACAATGTGTTGTTTCTATTTGCGGACAACTTTTGGATTGTTTGATGCATTATTTTTCAACGTAGATATG TTAGTATGTTAGAGTATATTATAAATTCTATCATTAAATGCTTGGCATGGTTTTCGTAAGCTGATTAATAAAAAAGAGAT AATAACCTGTCTCATGTTTACTAACAATTTGTGCCATCTGTCTTCAAGTTGTATCTTTTCCAGTGTAGCTTCAACCAAAA GATTAAAAAAGAGAACATTTTAGGAGAAAAAAGTTTTTCTTTATTTATTTTCTTCATGTTTTGATTACTTGTGGATAAAT TTTAATCCATCTTTTTTTTGTAATGCTTTCAGATAAAGTTGCAAACTCAAAAACTAATCAGCTTTCGTCAAGCAACAGAG AGAAAAATGAACTTTTTGCACAACCAAATGCTGAAAGTTTAGACAACTTATCATCCCTAATGCAAAAGAGCAGGCAGGGA AGTTCAGCTGATAACAAGCTGGCCAAAAATGCAGAAATTGATTTGGTAACTGGTAAAACTTCAAACAGCTTACAAGCATC TTTGGCAAAAGACAAAGGTGACAATATGAATAAAATAAATTCTTCGAAAAGGGGTACGATTGATATTCAATCAAGCAAAG AAACATTAGGTAGTTTGTCTGCACTGCCAAAAGTCAAAGAAAGTGATAAGATTAATTTCTCTTCTACCAGAGATGGAAAA CCTGAAAGTGTTTCCAGCAGTTTTAACAACATGGTTCTTGATGTAAAATCTGGAAATTCTGATAGTACTAATTCTAGGGG ATCTCGTCCACAAGTCCCTTATAAGCCGGAAAACTGGATGCTCCCTCAGCAATCTTCTAAAGATGCATTGTCTCAGCTGA ATCTTGCAATTGTATGACAATGGCTTGTTTTTTTATATGTTCCAAGACTATATTTCTAGGAATTGATGTCTCATAGTTCT TAATTTTTCAATTGTAGGTTGGTCACGTTGATTCTGGAAAATCTACACTATCTGGTAGGTTATTACATCTATTGGGACGA ATTTCCCCAAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGTATTTTCATTGTGGCCGTCATTTTTGTACTA TGAGCACTTGATGCTTATAATGCATGTGCCAATTTCAGCTCCCCCTTTTTTGTTAAGCAGGGCAAGGGATCCTTTGCTTA TGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACGATGACAGTGGCTGTTGCTTATTTTGACACCA AGAAATATCACGTTGTTGTGCTCGACTCCCCTGGCCATAAAGATTTTGTCCCTAACATGATTTCTGGGGCAACACAAGCT GATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCAGGTATGGATGGTAGCAAAGGACAAACAAGGGA GCATGCACAACTTATTAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCTGTAAATAAGATGGATGCTGTGGGATACTCCG AAAATCGATTTGATTTTATTCGGCAGCAGCTCGGAAGTTTTCTCCGCACATGTGGATTCAAAGAGTCTTCTCTATCATGG ATTCCCATGAGTGTGATGGAAAATCAAAATTTGGTAGCATCCCCTAAGGACACTGATTTTAAAAACTGGTATGTCTCTGA ATAATCTAGATGTGTTGATTTCTGTTGGTGGGCAATGACTGGGGTTATGGAATTATGACAGAATCAAAACAGAAAAACCT AGACAGTTTTCCCAATTTCTTTGCGTATAAAATTTTCAAAAAAAAGTATTAGAGTCAAACCAGTAGAGTGAGATTTACTA ATATACCTGTGTAGATATAGTGATGACTTGTATTTTACTTATCTAGTTGTAGTCATTAAGAAATTGAACCAGTAATCATT TTGTATTGAATTTTCTATTCTATTTTGAAATGATCATTGGTTAGTACTAAATGTTGATCGACTAGGATCTACTACAGAAA CAATTAGTGACATAGGGGCAGTTTGAGTTTGAGTCTCTCAAAGCTGATTTAGAACTGTTTAAGATAAACTACTCATAAAA AATTAGATTATTTTGTAGCTAGTTGTAAGTTATATCTTATCCAATATCATCCTAATGGTGACACAGGGATAGTTTGACAA CTCAAACTTGTTTAGAACTGTTTAAGATAAACTACTCACCTATATTTTACAGCTAGTTTCAACTTAAACTTGTTTTGGTT AAAACCAACTGAGAGTTGTATACTGCCATAAAACCAATTTTTGAAACACTACTTTCTACTTAGTTATCAAACATCTTATA TTTAATAACTGTCTCCATTGCACTCAAATATCACGTTTTCAGAAGTTCCCGAACACCTGAATAGTGTAAATAAAGTTGTT CTTTTCTTTTGAATGGAATTCAAGTAGCATTAGCAGTCATTGTGTAACTTTGTTATCTCTAGAAAGGCAGAAAGACTTAA CTCGACTTACTTGTTACTTTTTCCCTTTTTTCTTTACTTTTTTAATATCCAACCTTGATAGAAATAGCCTTTTGGGACAC CCTCGTAATAAATTTGTAAATCCCACCTTACTCTATTTTCCAAGCAGAAAAACTGACATAATAAATTTAATGTCTCATGT ATAGCATCTTAAGCCTAGCAGGCTAAGGCTTAGTATGTTCTTGTTGCTACTCTGAAATCCCAATTGAGCAGAAAGAAACT TGGGCCATTATTGTTTTACTAGTATGCTGTCCATTCTCTCCTCAGTTCTCTGGTATCATATGCTCATTAGGAAAGGCCAG TTTACCCCATTCAACTTAAGCTCATGTGCATTTTGGCCCCAATACTTTGAAAATTTTATTTTCTTCCAAGCGCTAATGCA AATCGTTACACCAGAATCATGTGACCATATGTTGTATTAATTTCTTATTGAGAAAAGTTTGATTTACCGTAATCAAACTT AGGGTCATGTGCACTTTGGTCTTGAAACGTAAGTAAATCAAACGAAAGGAATGGTTGTTTGACAGGAAGTCAAACAAAAT GAATTGTATGAAATTTATAGTACTGACAAGAAATGATGTTGTGTTCATTGTGAAACAGGTATAGTGGACCTTATCTATTA GAGGCAATTGACTCGCTCCAACCTCCTATTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGTGATGTTATCAAATC AACTACACTGGGACAGATTTCTGCTTGTGGTAAACTGGAAGCAGGAGCCCTTCGGAGTGGATCAAAGGTATAGAATTTGG TAGAGTTATGGCTATTACTGATAAATTGAATGAAAAATTCACATTTTTAACTCTCCAAATCACAAGTGTTTTGTGCTGAT CTGAAATTAACCGAGTTCTTCTAGGAATTAACAAAGTGGGAGTTTTAGTCTCTACGTTTTTATTGTGTTCCTTACTTTGA CAGCATGTTCATTTTAGTCCATTAATTTGCAAATGACATCAAGCTATTTGTTCAATTGCTATCCTAATGGTGAATTTCCA TTCAGATTTTTCCATACTGCTGTCCTTTTCAATCTTGTTTCATTTTTGCAGTCTTTGGATGGTTTGTATTGATGTGATTG GAGATGGGGTTTTGTTTATATAGCCTGGAAATTTAATCTTTTTGTATGTATTGGGTTACTGTATGATCGAGTAGTGCATG GAACGAAATCACATACTTAAATTCTTCTTGGACATGATGAAATGAAACTATTCCTTTCTATAACTGTATTTTTTATTTAT TGTAGGTCTTAGTTATGCCTTCAGCTGTTGCGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGTCTGCAATATTGCT AGAGCTGGAGATAACGTAGCCGTAACGTTGCACGGTATTGATGGAAGTCATGTGATGGCAGGAGATGTACTATGCCATCC TGACTACCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTTGTCTTGGATGGTGCAAATCCCATATTGGTGGGAG CTCAGGTGTGTAGTACTTTAAATATGACAACATTCTTTGCACTTTCTTTTCTAACTTCTGTTTGAAAAAAAGGCAAACCT GGTGCCATTAAGCTGCTGTGCTATGTGCGAGGTTCAAGGAGGGGCCGTACCCACGTTGTGGGTCTAATTTAGGCAGCCCT ACCTCGCATTTTTGCAAGGGGCTGATTCCACGGCTTGAATCTGTGACTGAAAAGTCACTTGGCAACAAACTTACCATTGC ACCGAGGCTCGCCCTCTTCTAACTTATGTTTATTGGGGAAAAAAATCACTTCTCTTTTTCTATCTGTGCAGTCAGAGTTT CATATACACCATGCAAAGCAACCTGCTAGAGTTTCGAGAATATTGTCGGTACTTGATCCCAAGACTGGTAAGGTGACCAA AAAGTCCCCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTCATTGAGGTGAATAAACAAAGCAAAACTTTTCTATTACTCT ATTTCAATGATCATCCACGAATTTTTTGTTTTGCCTACATTGCTAAGGACACAGAAAACATGGAATGACTTTTATTGTCT CTGTTTTTCAGGTGACTTTGCAGGAACCGGTATGTGTTGTAGAGTTCTCTACTTGTAAAGCTCTTGGAAGGGTGTCCCTC AGATCATTAGGAAGAACAATTGCTGTCGGACTTGTAACAAGAATAATTGAAGAACAAGAATAACATGGAAACGTTCTGAG CACACCATGTTTGCTGTTCCAGGAAACATGTTTGTTTGCCATCTTAGACTAGATTAAGTTATGCTGGCAGACAACCGGAA GCTATGTGACTATTGTTGAGGTTCTTGGGTCAATATGCGAAATATGTAAGCAATAAGAATGGTTAAGTTATTCTATTTTT TTGATGTTAATTTCGCCCCCTGTGTATCATAACTCATAAGAGTGTTCCTCTTCAATAGTCTGGACTTGTGTACTATAGCA ATTTTGTTGGAACAGGAAAGCATGCATCCGTTGGATGTAATTGCTTTTATTTTTTGATAATGCCTAATGTTTAGCATT 

CDS sequence (LotjaGi4g1v0382500.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTCGTAAAGTAAACTACGGACTCGATTACTACGAAGACGACGACTATGCCGACTACGACTACGATCTTGACATACA AGAACAACATGTAACAGGAGAAGGACCTGATACAAAGCAAGAGACCGTGAGACCTGGACTTTGGCCATGCCCCATTTGCA CTTATGACAACGATGACAGTATGACTACCTGCGATATTTGTGGTGTTGTACGTCATTCCTTTGTTAACATGGCAACTTCT AACACTATCAAACCAGATTCTTTCAAGTTTGATGGTCCATCCCCAGATGATGTGGTTTATTCTGGCCTAAGTTCTTCAAA AAAGGGTCTGAAAGATAAAGTTGCAAACTCAAAAACTAATCAGCTTTCGTCAAGCAACAGAGAGAAAAATGAACTTTTTG CACAACCAAATGCTGAAAGTTTAGACAACTTATCATCCCTAATGCAAAAGAGCAGGCAGGGAAGTTCAGCTGATAACAAG CTGGCCAAAAATGCAGAAATTGATTTGGTAACTGGTAAAACTTCAAACAGCTTACAAGCATCTTTGGCAAAAGACAAAGG TGACAATATGAATAAAATAAATTCTTCGAAAAGGGGTACGATTGATATTCAATCAAGCAAAGAAACATTAGGTAGTTTGT CTGCACTGCCAAAAGTCAAAGAAAGTGATAAGATTAATTTCTCTTCTACCAGAGATGGAAAACCTGAAAGTGTTTCCAGC AGTTTTAACAACATGGTTCTTGATGTAAAATCTGGAAATTCTGATAGTACTAATTCTAGGGGATCTCGTCCACAAGTCCC TTATAAGCCGGAAAACTGGATGCTCCCTCAGCAATCTTCTAAAGATGCATTGTCTCAGCTGAATCTTGCAATTGTTGGTC ACGTTGATTCTGGAAAATCTACACTATCTGGTAGGTTATTACATCTATTGGGACGAATTTCCCCAAAAGAAATGCACAAA TATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGA AAGGGGAATAACGATGACAGTGGCTGTTGCTTATTTTGACACCAAGAAATATCACGTTGTTGTGCTCGACTCCCCTGGCC ATAAAGATTTTGTCCCTAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGT GCATTTGAAGCAGGTATGGATGGTAGCAAAGGACAAACAAGGGAGCATGCACAACTTATTAGAAGTTTTGGTGTTGACCA GGTTATAGTTGCTGTAAATAAGATGGATGCTGTGGGATACTCCGAAAATCGATTTGATTTTATTCGGCAGCAGCTCGGAA GTTTTCTCCGCACATGTGGATTCAAAGAGTCTTCTCTATCATGGATTCCCATGAGTGTGATGGAAAATCAAAATTTGGTA GCATCCCCTAAGGACACTGATTTTAAAAACTGGTATAGTGGACCTTATCTATTAGAGGCAATTGACTCGCTCCAACCTCC TATTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGTGATGTTATCAAATCAACTACACTGGGACAGATTTCTGCTT GTGGTAAACTGGAAGCAGGAGCCCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGCGGGAACAGTACGC TCATTGGAGCGTGACTCTAATGTCTGCAATATTGCTAGAGCTGGAGATAACGTAGCCGTAACGTTGCACGGTATTGATGG AAGTCATGTGATGGCAGGAGATGTACTATGCCATCCTGACTACCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGC TTGTCTTGGATGGTGCAAATCCCATATTGGTGGGAGCTCAGTCAGAGTTTCATATACACCATGCAAAGCAACCTGCTAGA GTTTCGAGAATATTGTCGGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACTGCAAAGCA AAGTGCAGTCATTGAGGTGACTTTGCAGGAACCGGTATGTGTTGTAGAGTTCTCTACTTGTAAAGCTCTTGGAAGGGTGT CCCTCAGATCATTAGGAAGAACAATTGCTGTCGGACTTGTAACAAGAATAATTGAAGAACAAGAATAA 

Protein sequence (LotjaGi4g1v0382500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPRKVNYGLDYYEDDDYADYDYDLDIQEQHVTGEGPDTKQETVRPGLWPCPICTYDNDDSMTTCDICGVVRHSFVNMATS NTIKPDSFKFDGPSPDDVVYSGLSSSKKGLKDKVANSKTNQLSSSNREKNELFAQPNAESLDNLSSLMQKSRQGSSADNK LAKNAEIDLVTGKTSNSLQASLAKDKGDNMNKINSSKRGTIDIQSSKETLGSLSALPKVKESDKINFSSTRDGKPESVSS SFNNMVLDVKSGNSDSTNSRGSRPQVPYKPENWMLPQQSSKDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISPKEMHK YEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLG AFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDAVGYSENRFDFIRQQLGSFLRTCGFKESSLSWIPMSVMENQNLV ASPKDTDFKNWYSGPYLLEAIDSLQPPIREFSKPLLMPICDVIKSTTLGQISACGKLEAGALRSGSKVLVMPSAVAGTVR SLERDSNVCNIARAGDNVAVTLHGIDGSHVMAGDVLCHPDYPVAVAKHLELKVLVLDGANPILVGAQSEFHIHHAKQPAR VSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVEFSTCKALGRVSLRSLGRTIAVGLVTRIIEEQE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 41 88 48 2.9E-5
ProSiteProfiles 44 73 30 8.468
SUPERFAMILY 46 71 26 7.46E-6
SMART 46 70 25 1.8E-4
ProSitePatterns 48 67 20 -
PANTHER 97 713 617 2.3E-261
PANTHER 97 713 617 2.3E-261
MobiDBLite 181 200 20 -
MobiDBLite 247 271 25 -
MobiDBLite 247 265 19 -
Gene3D 262 508 247 2.7E-81
ProSiteProfiles 284 515 232 52.973
SUPERFAMILY 286 529 244 4.18E-59
Pfam 287 503 217 8.8E-45
CDD 288 507 220 1.66255E-119
PRINTS 288 301 14 1.1E-19
PRINTS 347 355 9 1.1E-19
PRINTS 367 377 11 1.1E-19
PRINTS 383 394 12 1.1E-19
PRINTS 428 437 10 1.1E-19
SUPERFAMILY 506 602 97 2.91E-18
Gene3D 512 601 90 2.6E-23
Gene3D 602 712 111 1.6E-32
CDD 602 710 109 1.37643E-44
Pfam 603 710 108 1.0E-16
SUPERFAMILY 607 711 105 3.31E-23

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0382500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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