Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392200 |
| Transcript ID | LotjaGi4g1v0392200.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A0S3QYP6|A0A0S3QYP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77072185..77075181) extracted from Lotus japonicus Gifu genome v1.2.
TCGCAATTGCAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGATTCTGAAAGAAACTGTAAT GGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGAAA ACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCACCG GCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCTGA TGATTACCATTCACTGGATGAGGTAAGATCAATACAAAAACTGTGTTGTTGTGATCTGCTTGTATGTAATTGTATTTCTT CGCTATGTTCTGTTAGCATCATTGACTTGTGTTTGGGAGAAAGAAAGGGAAAGGCCACAGGGACCTTAGGGACATTGACT TGACCATTACTAAGTCAACCTTCATGGCGTTTTCAGATTCTGTACGCGTGTTTGGATCATTGTTTTCAGAATTGATTTTG GTAAAGTTGATTGATTGTGGTAAAAGTTAGTTGAAAGTAATAAGAACTAAGAACCTTGCATTGGAGATGCTCTAAGACAT GGAACCAAACACACATGTAGTTAGAAAGGAAATCAGCTTCTTAAAACTAACCGGGCGAAAGGAGATTGTATGAGTTGTGT TCTTTATGAATTCTGTACTGAAGTGCTAGGTTTTAATTTTCAGCTAATAATCTATAAGCTGCTTCACCCAACAATTACCC TTGCTGTTTCAGCACATATAAAATATCTCGTCAAATAATGGAATAAATGCATACAGGTTACTGCTGCTCTTTCACATGCT GGCCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTCACAAAGAGCAACGAATGGACAGGTTTTAATCACTTACATCT TGATGGTTGAGTTTCTTATACTGAGTTTTAGTACTATATAACATTTTCACTTTGAAAATCAGGGAAGATGTCCTTCAATC GAAAAAGTTTACATCACATTGGAAGTGGGCCTAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTT TTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGGTAACGCCAGACATAAATCTTCACACTTTTCCCTTTC CAATTGTTTATATTTCCAAATTGCAAACTTGATTGTGTTTCTTACTTATGATTTCCCCCTGTCAGCATCAACACATGATC AAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTT CCTCGTCTTCGACTAGCAGGTGTTGCCTTAGTCTTAGATACTAGTAGCATTTTTTAATTAGGCTCAGCATGACTCATGCA TTCATGTGACAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATAT CATGTCTTGCTAATAATCGCTGATGGACAGGTATATTTAATATAATACATATTTCATTTCATGGATAATTATTTATAAAC TTACACCAGTCATCAAAGTTCCATTGAGAGTTATCATCATGCTAGTTTTGTGTATGGCTTTTTTTTATCCGAGGAAGAAA CTACAATGTTGTTATTGAATCATGACAGCAAAAATTTATACTTGAAATCTGCAACAGGTTACTAGAAGCGTTGACACGCA GCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGGTAAGCTTAGCAGTTTTGTCTGT TCTGTGATGCTGTTCTGCAGTCTTATACCCTAATTGGATCGCAGCGAGTATCCACTGTCGATAGTTTTGGTGGGAGTTGG AGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGGTTTGGTGAT GAAACTCTCACTAGACCATATTGACTTGCCATGTATAGATCTTCCAATTATGCTGAAAATGTGAACTTGGCTTCTGTAGT TTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCAGCTTTGATG GAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGGTAAAAATTGAATATCAATGTGGTCAAATATCA AATATGGTCTTACTTATAGCATATATTGGGGTATTTAATTGATATATATCAAATAGTGCGCGGAGGGGACATTCACCGGA CCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTC AGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAG GTATTAAGATTTAAGACACCATTCTTTCCAACTTAGTATGCCACATATCACATTCTTCTGAGTCATAGTTTAGTTTTCCT CCCTTGAGTCCTAATGTTCATCAAGGTTTATTCATGATCATTTTTTGTGTCACACTCTCAGTCATAGTTTATATATGAAG TGGTTAAATGCAGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGGTAAGAAATT AAATTATGTTTCTGATTCATCTTAAATCTAAGGCTGTATGAAAAGAACATAACATTAACTTGAGAAAAAAGTACATGCAC TGATGGTCAACAAATCAGATTTCAAAGATGTTAAAAAATCTTTACATTGTCAGTGCATCAAAATTAAACTTTATTAACTT TCCTTGCCGTTGTTGTTATTTCCTTACATGGGACAGACTTGTTGTGATTGTGGAGAAAGCCTCGAATCCTGCCCTATTTG CCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG
CDS sequence (LotjaGi4g1v0392200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGA AAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCAC CGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCT GATGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCAT TGATTTCACAAAGAGCAACGAATGGACAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTA ATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGA TTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGT TTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCA TGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTTACTAGAAGCGTTGAC ACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTGTCGAT AGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACA ATTTTCAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCA GCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCGCGGAGGGGACATTCACCGGA CCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTC AGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAG GTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGTGATTGTGGAGAAAG CCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG
Protein sequence (LotjaGi4g1v0392200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGKSSKGSGRRHVSSYDSAGSSSSWENYGIPQQPYGYPSQNSHQSTPLHHRAPAAAATAPFQDYAQPKRRLDRRYSRIA DDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKMSFNRKSLHHIGSGPNPYEQAITIIGKTLSVFDEDNLIPCFG FGDASTHDQDVFSFHSDESFCNGFEEVLSKYREIVPRLRLAGPTSFAPMVEMAMTIVEQSGGQYHVLLIIADGQVTRSVD TQRGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSSNVDSSRKEAAFALA ALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPRYDRASSSSAATSFRSNSFQQSAHTYTGYNNEVSTEPSSGGLYDNK VCPICLTNGKDMAFGCGHQTCCDCGESLESCPICRSAITTKIRLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 1 | 445 | 445 | 3.4E-262 | – | |
| PANTHER | 1 | 445 | 445 | 3.4E-262 | – | |
| MobiDBLite | 1 | 64 | 64 | - | – | |
| SMART | 100 | 303 | 204 | 1.4E-7 | ||
| SUPERFAMILY | 101 | 284 | 184 | 1.73E-11 | ||
| Pfam | 125 | 338 | 214 | 2.4E-75 | ||
| MobiDBLite | 340 | 371 | 32 | - | – | |
| Gene3D | 376 | 445 | 70 | 1.9E-12 | ||
| SUPERFAMILY | 396 | 441 | 46 | 1.53E-6 | – | |
| Pfam | 399 | 439 | 41 | 4.6E-8 | – | |
| CDD | 401 | 445 | 45 | 1.53365E-24 | – | |
| ProSiteProfiles | 402 | 435 | 34 | 10.837 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0392200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…