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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0442400 |
| Transcript ID | LotjaGi4g1v0442400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|V7CQ72|V7CQ72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0442400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81593994..81596693) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGACACTTCTTCTCCGCCGACGGACCAACTCGCCGCCGCCACCATCACCGACGAGGTTCCCAAGGAGCAATTCTC CGACCGCGTTCTGATCCAGTCCATAATCCGCCGCAGCGACGGCGGCTCAGGTCTTGCCGGTCAGAAAGCCAGGGTCGGCG GTTGGGTGAAGACTGGAAGGAAGGCTGACAAGGACGCATTCGCCTTCCTGGAACTCAACGACGGTTCCTGCGCCGGAAAC CTGCAGGTGATTGTGGAGGCTTCACTCGCTGAGTTAGGACAAATCGTTCAAACCGGCACGTGCATCGTCGTCGACGGCCA CCTTAAGCTTCCTCCTGCCGGCACCAAGCAGAAGATCGAGCTTCGCGCCGATAAGGTTCTCCATGTGGGTCCTGTTGATC CCGCCAAGTACCCTTTGCCCAAAAGCAGACTCACTCTCGAGTTCTTGAGAGATTACGTTCACCTTCGCTCTAGAACCAAC ACGGTACTTCCCTTTCTTTCTATTTTCATTTTCCTATCAGTTTTTGGTGCCAATGGGTAATTGATTATAGCTCTATAAGC TTAAGATGATGTGTATTTAGATTTGTAAATTTGATTTTTCTATGAAAATTGATTGTTAGTTGAAGGTAGTGTTAAGTAGA ATTCAGTATGAAATTCTCAACAGTACACATGCCTGATGCAAAATCACATTTAGTTAAAATCAACCAATCATGCTAGTAGA TTTGTTTTTCGCAAATTTAGAAATGATGTGTTTGTGAAGCTCTTAAATTGGTTGATATGATTGTTATTGGGTTTGAATGC AGATCTCTGCTGTTGCTCGAATTCGGAATGCTCTTGCTTATGCTACGCATACATTTTTCTACAAGCATGGGTTTCTTTAT GTGCACACGCCAATTGTCACGACGAGTGATTGTGAGGGTGCGGGTGAAATGTTTCAAGTGACAACCTTGCTCAATGAAGC AGAGAAGCTGGAGAAGGAACTGATACAGAATCCTCCTCCCACAGAAGCTGACGTAGAAGCTGCTAGGCTTGTTGTTCAGG AGAAAGGGGCGATTGTTGCCCAGTTGAAATCTGCTAAAGCTAGTAAGCAGGAAATCAGTGCTTCTGTGGATGAGCTTAAA AAAGCAAAGGAGAATTTCTCTAAGGTGGAGGAGAGATCTAAGCTTAAGCCCGGTATTCCTCAAAAGGATGGAAAGGTTGA CTATACTAAAGATTTCTTTGCCCGTCAAGCATTTCTAACGGTTTCAGGCCAGCTTCAGGTTGAGTCTTATGCATGTGCTC TTAGTAGTGTGTATACATTCGGGCCAACATTTCGTGCTGAGAATTCTCACACTTCGAGGCATTTGGCAGAGTTTTGGATG GTAGAGCCTGAAATTGCATTTGCAGACTTAACGGTATACGGAACTTGAACTCACTCTCAATTTATTATGATTATCATCAA TGGCTATTGTTTTAAGGACACTTACTGTTTTCCTCCATCCTCTCTGGATCTAATTTTTTATCATCAGATATGTTATTTTT TGCTGTTGTTGTGGTAATACTTATCAGCCCAAAGTGAATTAAAACATCTGATTTCTAGTGCAATAAACTTGTTAATTTTC TAATGCAATGTTTGGTTCTTTTGCATTTCTTGTGCTGGGAATATTAAAGTTCATGGTTTTGTATTTTTTTGTAGGATGAT ATGAAGTGTGCCGAGGCATATGTGAAATTCATGTGTCAGTGGTTACTTGATAACTGTCTTGAAGATATGGAATTTATGGC GGACAAGTTTGATAAAGGTTGCATCGATCGTTTGAAAATGGTGGCTTCCACCCCCTTTATTCAACTTTCATATACAGAAG CAGTAGAAATATTGGAGGAAGCTGTCAAGAATGGTAAGAAATTTGAGAATGAAGTAAAATGGGGGATTGACTTAGCATCT GAGCATGAAAGGTACTTCTAATTTAATTTTTTCAAGTTCTTGTTCTTATTGAAATGTGTTGTGTGATATCTTCAGGGTGT GATGTTTTGCAGATACCTAACTGAGGTAAAGTATCAGAAACCTGTCATTGTCTATAACTATCCAAAAGATATCAAAGCAT TCTACATGCGCCTCAATGATGACTCAAAGACAGTTGCTGCTATGGATGTGCTTGTCCCAAAGGTGTGTATCCTACATCTT TTGTTTTGAACGTATTTTGACACCAAACATAATTTAGAGAGGACATTATGATGTATCTAACTCCACCTAGTGAGAAAAGA CTGTTGTTTTGTTGTTATATCTTGATTCCTAGTGGCTTTTGTTGGTTCGCATAATAGAAACATGTAAATGTAATTTCAGG TTGGAGAGTTAATTGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTAGAAAGGTAAATTTTACTTACCTCCAAC ACATCCTACTTCACTTTTTTAGTTTATCTTTTGCTTAAGTTGTTTCCTTTAAGCTAAGGATTTTGCATTCCTTGGATGAT GGTTAACTTGATTTTTTCTTATTTGCATTATTGCAGAATAAAGGAGATGGGGCTGCCTCTTGAGCCATATGAGTGGTACC TTGATCTGAGGCGTTATGGAACAGTGAAACATGCTGGATTTGGTCTTGGCTTTGAAAGGATGATTCTTTTCGCAACCGGT ATCGAAAATATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAGCTGATCTATGA
CDS sequence (LotjaGi4g1v0442400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACACTTCTTCTCCGCCGACGGACCAACTCGCCGCCGCCACCATCACCGACGAGGTTCCCAAGGAGCAATTCTC CGACCGCGTTCTGATCCAGTCCATAATCCGCCGCAGCGACGGCGGCTCAGGTCTTGCCGGTCAGAAAGCCAGGGTCGGCG GTTGGGTGAAGACTGGAAGGAAGGCTGACAAGGACGCATTCGCCTTCCTGGAACTCAACGACGGTTCCTGCGCCGGAAAC CTGCAGGTGATTGTGGAGGCTTCACTCGCTGAGTTAGGACAAATCGTTCAAACCGGCACGTGCATCGTCGTCGACGGCCA CCTTAAGCTTCCTCCTGCCGGCACCAAGCAGAAGATCGAGCTTCGCGCCGATAAGGTTCTCCATGTGGGTCCTGTTGATC CCGCCAAGTACCCTTTGCCCAAAAGCAGACTCACTCTCGAGTTCTTGAGAGATTACGTTCACCTTCGCTCTAGAACCAAC ACGATCTCTGCTGTTGCTCGAATTCGGAATGCTCTTGCTTATGCTACGCATACATTTTTCTACAAGCATGGGTTTCTTTA TGTGCACACGCCAATTGTCACGACGAGTGATTGTGAGGGTGCGGGTGAAATGTTTCAAGTGACAACCTTGCTCAATGAAG CAGAGAAGCTGGAGAAGGAACTGATACAGAATCCTCCTCCCACAGAAGCTGACGTAGAAGCTGCTAGGCTTGTTGTTCAG GAGAAAGGGGCGATTGTTGCCCAGTTGAAATCTGCTAAAGCTAGTAAGCAGGAAATCAGTGCTTCTGTGGATGAGCTTAA AAAAGCAAAGGAGAATTTCTCTAAGGTGGAGGAGAGATCTAAGCTTAAGCCCGGTATTCCTCAAAAGGATGGAAAGGTTG ACTATACTAAAGATTTCTTTGCCCGTCAAGCATTTCTAACGGTTTCAGGCCAGCTTCAGGTTGAGTCTTATGCATGTGCT CTTAGTAGTGTGTATACATTCGGGCCAACATTTCGTGCTGAGAATTCTCACACTTCGAGGCATTTGGCAGAGTTTTGGAT GGTAGAGCCTGAAATTGCATTTGCAGACTTAACGGATGATATGAAGTGTGCCGAGGCATATGTGAAATTCATGTGTCAGT GGTTACTTGATAACTGTCTTGAAGATATGGAATTTATGGCGGACAAGTTTGATAAAGGTTGCATCGATCGTTTGAAAATG GTGGCTTCCACCCCCTTTATTCAACTTTCATATACAGAAGCAGTAGAAATATTGGAGGAAGCTGTCAAGAATGGTAAGAA ATTTGAGAATGAAGTAAAATGGGGGATTGACTTAGCATCTGAGCATGAAAGATACCTAACTGAGGTAAAGTATCAGAAAC CTGTCATTGTCTATAACTATCCAAAAGATATCAAAGCATTCTACATGCGCCTCAATGATGACTCAAAGACAGTTGCTGCT ATGGATGTGCTTGTCCCAAAGGTTGGAGAGTTAATTGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTAGAAAG AATAAAGGAGATGGGGCTGCCTCTTGAGCCATATGAGTGGTACCTTGATCTGAGGCGTTATGGAACAGTGAAACATGCTG GATTTGGTCTTGGCTTTGAAAGGATGATTCTTTTCGCAACCGGTATCGAAAATATTAGAGATGTGATTCCCTTCCCACGA TATCCTGGCAGAGCTGATCTATGA
Protein sequence (LotjaGi4g1v0442400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADTSSPPTDQLAAATITDEVPKEQFSDRVLIQSIIRRSDGGSGLAGQKARVGGWVKTGRKADKDAFAFLELNDGSCAGN LQVIVEASLAELGQIVQTGTCIVVDGHLKLPPAGTKQKIELRADKVLHVGPVDPAKYPLPKSRLTLEFLRDYVHLRSRTN TISAVARIRNALAYATHTFFYKHGFLYVHTPIVTTSDCEGAGEMFQVTTLLNEAEKLEKELIQNPPPTEADVEAARLVVQ EKGAIVAQLKSAKASKQEISASVDELKKAKENFSKVEERSKLKPGIPQKDGKVDYTKDFFARQAFLTVSGQLQVESYACA LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLTDDMKCAEAYVKFMCQWLLDNCLEDMEFMADKFDKGCIDRLKM VASTPFIQLSYTEAVEILEEAVKNGKKFENEVKWGIDLASEHERYLTEVKYQKPVIVYNYPKDIKAFYMRLNDDSKTVAA MDVLVPKVGELIGGSQREERYDVIVERIKEMGLPLEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPR YPGRADL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 567 | 553 | 1.3E-224 | – | |
| PANTHER | 15 | 567 | 553 | 1.3E-224 | – | |
| Gene3D | 23 | 133 | 111 | 4.1E-11 | – | |
| Hamap | 32 | 567 | 536 | 42.345 | ||
| SUPERFAMILY | 42 | 130 | 89 | 8.08E-9 | ||
| TIGRFAM | 45 | 566 | 522 | 3.3E-170 | ||
| Pfam | 51 | 126 | 76 | 1.2E-7 | ||
| CDD | 51 | 130 | 80 | 3.67333E-25 | – | |
| CDD | 143 | 563 | 421 | 3.13535E-145 | – | |
| SUPERFAMILY | 146 | 562 | 417 | 5.78E-93 | – | |
| Pfam | 147 | 212 | 66 | 1.0E-11 | ||
| Gene3D | 222 | 294 | 73 | 8.1E-6 | – | |
| ProSiteProfiles | 231 | 287 | 57 | 10.652 | ||
| SMART | 235 | 292 | 58 | 4.1E-4 | ||
| Pfam | 239 | 277 | 39 | 2.0E-6 | ||
| Coils | 249 | 279 | 31 | - | – | |
| Pfam | 296 | 560 | 265 | 3.1E-64 | ||
| PRINTS | 306 | 318 | 13 | 1.0E-12 | ||
| PRINTS | 322 | 335 | 14 | 1.0E-12 | ||
| ProSiteProfiles | 324 | 557 | 234 | 13.819 | ||
| PRINTS | 482 | 498 | 17 | 1.0E-12 | ||
| PRINTS | 522 | 536 | 15 | 1.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Asparagine-tRNA ligase activity | Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Asparaginyl-tRNA aminoacylation | The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. The asparaginyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an asparagine-accetping tRNA. |
Expression pattern of LotjaGi4g1v0442400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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