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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228700 |
| Transcript ID | LotjaGi5g1v0228700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase dbp3; TAIR: AT3G05740.1 RECQ helicase l1; Swiss-Prot: sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1; TrEMBL-Plants: tr|A0A151U4Z2|A0A151U4Z2_CAJCA Bloom syndrome protein isogeny; Found in the gene: LotjaGi5g1v0228700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53595003..53600715) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCATTCCCTCTTGTTTATTTTTACACCAAACAAGATAAATTGACTCAAACCCCGCCATTCCCACGGTTTCCCTCCA ACTAAACATAGGTTAAACCACCACCCCTTCGCCTTGAATCAACGGTAACACGGCGCAGAGGGGGCAAAATCGAAGCGACC GCCACCGTCCACCGCCATCGAAATGGGAAGAAGTAGCCAGAATCAGCAGCCGGAGCACGATTTGGAGTTAGAGAAAACTC GCTTAATCAGCTTAGCTCTCGAATTCGGCTTCGACCAACACTCCGCCGACCAATGCTTCAACCGCCTCCTCGATCTCTAC GGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTCCTCACGGTGTTGGCGGAGTCGATGCCAGC CACTGAGGAATGGGATGACGATCCGCGCGAAATGGAGACTCAAGCTTGTGGAACGCTGTCTCACTTGCTTGAGAAAAGTG TTCCTGCTTCCGCTGATGGTGCCGCCTCCGCGTGCTTCATTGATGTTAGTGATGATTCGCCTCCTCAACCTCGCAAACTC CGAAGCAAAGTGGTGGAGTTGGGTTCCAGTGAAGATGAGGAGGATCGTGTGGAGTTTGGCTTTTCAAAGGGAAAATCTGC TGCATTTCCTGCTCAACATTCCCCAATTTCTGTGGTAACTAATTAGTATTAACTTAATGTTTCTGAATTCGCAGGCTTGT TAATAGCGCGGAATAGTGCTATAGCGTAGCACCCTGGGGTTCACCGCTACTCCACTATTCACCGCTATAGCGCTCGAAAT AGCGTTTTTTGGGCTTGCTGCTACGCTACGCTATCCGCCATTAACAACCCTGTGAATTCGGCATCATGACTCTTTTTTGT TACTGATTTCAATCTGTGGTAATGAGCATAACAAGTAGTAGTATTTAAGGTATTTAGATGGCAAAGGTTGTAGGCAGAGA ATTCCCTTGACTATTCCATGTGAGCATTGATTTTCCGTTATTGTAAGACTAAGATGACAATGTAAAATTGTTGAGAGTAT GGCTCATGGGTAATGTCCTGTAACACTAACCCAAGGGTATTCTGAATCTTAGTCAATATACGAAACTATAGCTGCCCTGT AGTCGCAGAAGTAGGCAATTTGGCTGAACTGTGTGGCCAAAGTCTTGTGTGTTTCTCTTTACTCTGATTCGGTATTCGCG TTACTGTTCTAACTTATACTGAATAGTTAATGTATGTTATAGGATGGCAGAAGTGGCATAACCCAAGGCTCAGTTTCATC AACTTCCAGCAAGATACAATCCTCCTTTGCATCGAAGGACAGATACAATACTCTAACTTATGAAGAATTGCAGGCGCTAG ATGATATCGAATTGGCAAATGTTGTTATCTTTGGTAACAAGTCGCTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCT TTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCACTTTGCTATCAGGTCATTTCTTTTTCTTA AGCCCTATTCTAATATATTTTTTGGTCATCTTCTTCTAACAACTTAATATCATTGATAGTTATATTTTTTTGAAGTAACT ATTCAATCAAAAATGCTAAAGATCTAGAAATTCAAATTCAAATTATTGCAATGTGTATCATGAATGTCCCTGTTTTTTTC ATAGCTTCAATGGCAGTTACAAGCTGTTCTTTGTACCAAAATTACATTAATTGGTGAAATATTGTTATCTGTCATCTTAT AGTTATAGCTTATATACTTTTGAACATGTTTATTTTAATTTGTGTTTACAGCTTCCAGCAACTCTTCTACCTGGAGTTAC AGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTGAAGTTTGGAATACCTGCTACTT TTTTGAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTCCTCCAAGAGCTAAGGTGAGATTCACTTTCTTGTATATTC TTATCTATCAAGTTCTGTCCTATAATTTTCCCTTGAAAAAAGTGTATAGTTTTATTTGAAAAATACCTTTCAGATAACTG ATTGCTTTCGTGTTTAAATTTTTCTTACATCAGTTTTCTTGTTTCTAGAAAAGACAAACCGTCATGCAAGCTCTTGTATG TGACACCAGAGAGAATTGCTGGAAATCAATCATTTCGTGAGATTCTAAAATACATGCATCAAAAGGTAATTTTTTATTGA TTTGAGTACATTTTATGAAACTACTTTCTTATGTGCATTTGTGTTTGGTGCTCCCTATTACAGGGACTGCTTGCAGGTTT TGTTGTCGATGAGGCACACTGTGTTAGGTATGCCTTGTATTTTTGTGCTTAATCCCATTAACTCTTTTATATCAATGACA TTAGTTCTATGAAATTTCTGAGACACAACTTTGTTATTTATTCTACCTTCTTGAAGCAGCACTGCCCCATGTGGTCTGTC TCGTATGTGACTGACTGATTACAATATATGAACAAACCCCAAAATTGTAACTACTGATGAAGTGCTGTTATTGCATAAAA TGTCATTTTGAATTGAGCTCTTGTGGTGACCTTTAAGAAGGCAGATCAAGTGAAATTGGACAGCTTGATTACAGTAACAA GCTTTGGATATGGTGAGATCACAACATCAAAGGTATGACCTTAGGTCATCTGGCTGAAGGTCTTCAAATGATGCTTCCTT AAGTTCATAACTTCTCAAAAAAATTAAAAAAAATGGAGAAAAAGGACTTCATATGAAAATGGGTTAGAATTAGTAGAAAT AAGGATTAATTTCTTAATTCGGAGTTCTAACACCGGATCTTTTTGAATTAACTGGTATGTCATTTCGTAGGCCAGAAGTC TGTATTCAGTCTAGTTTTTGGTTTTCCTGGGTGATGCAGTTCTTGGCTGCTTAAGATACAAAATTGATATATGAATATGA ATTATTTTCTTAGCTTAAAGTTACACATAGTTCCATTACAAGTACTATGAATTTTTCTGATGAAAATACTACAAAGTTGA GCTGACAGAACAGTGGAGGCAGGCCTCAAACAGTTAGAGATGGGGGGGTTGTTAAAGCTGAATGATTTCTGTTGTTGTAA GAGATATCTATTACTCACTACTTTTAAATTGAAAATTATACTTTTTCAGCCAGTGGGGACATGATTTCCGTCCTGATTAT CGGGCATTGGGATCTCTTAAGCTAAACTTTCCAGGTGTACCTATCATGGCATTGACTGCCACTGCAACCCACTCAGTTCG CGAGGTAATTAGAAAAGCAGATTGCAAGTATTGACAAATCTATCTAGTATTAATCCTCCCTTTTTAATTTTCCTTTAAAT TGCATCTGTTTCAGGACATCTTAAACGCTTTGAGAATCCCGCGTGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAAT TTGAAATATGAAGTGATTGGTAAGACAAAGGAACCGCTGAAGCAACTTGGAGAGCTAGTAATGGCTCGTTTCAAGAATCA GTGTGGAATTGTTTACTGCCTGTCAAAGAATGAATGTGTTGAGGTCTCAAAGTTTTTGAATGAGAAATGTAAAATTAAGA CAGTGTATTACCATGCTGGCTTGGCTGCCCGTCAGAGAGTTTCTATTCAAAAGAAATGGTATGACGGAGAGGTCCATATT GTATGTGCAACTATTGCTTTTGGAATGGGGATTGACAAACCTGACGTTGTAAGTTGACTTACGTTTTCTTTGTAACTATT ATGATATTGCTGGTATCACTCTCATTTTGGTGATTGACATTGTTTATGACTATCTCTATTAAGGCAGCTTCATGATTGAT ATATCAGATAAACTAAGCGGTCTATTACTGATATGCTACATATATACTGAACCAGTGTGGTGACTACGAAATGAAATAGA GGGACCAACCCTCATGTATTACAATTTTCTAGCACAGCATATATCAAAGACCTTCATGTATACATAGGAAGTCTTCTCCA AGGCTTGTGTTCATGATTGACATAACTGAGTTAAAATGCAAATGATCATTTGCATAACTATTCAAATTCCCAGTGATATC TCCTTATCTATCCTGCCTAAATGCATTGAAAGTATAAACCCAAAATCTAAAGCCATTATAGATCAAGTCTGCCTAATAAA CATAAATATAGCTTATATATTAGTGCAGCATTTGTATGCTTGGCTAGGGCAAATTGTCACATGTAAGGTGAGTAAATGCT CTACAAATTGCTAGTTATAGAATATTCATACTTCAATAAAATATTCTTAGTGATATATGAGTTTTACAGTCTCTGTTACT CAAATTATCCATTTCTTGTCATGTGTTTTCAGCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTAT CAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCTCTGTACCAAAAGAAGGATTTTAGTAGAGT AGTATGCTTGATAAGAAACGGACAAGGATATAAAAGGGACAGTTTTAAGTTAGCAATGGCTCAAGCCAAAAAGATGCAAC AGTACTGTGAACTAAAGGTAAGCAAGCTCCCTTATATTTCAACGTCTGTTGTTTTATTCTTTGTCCCTCCCACATGCATC TAGTCAGTTTTAATACTGTTGTAAATATTTGTTCAAAAAAATAAAACCGTTGTAAATAGGGGTTTAAAAGTTTGATTTAT AGACATGAATTTTCGTATAAAATGTCCATAAATTTTTCATCCATGAAACTTCTAATTTTATCTGGTTTGAATGTTTAGGT TGAATGTCGAAGAGAAACTTTGCTCAAACACTTTGGAGAAGATTTTGACAGAAAAGCATGCAAGCATGGATCTAACCCCT GTGATAACTGTCTCAAGACTGCATCCTGAGACGTTCAATTTCAAGTTTGATGTGCTCTAACCATTTCAGTGGACCGGTTG GTCTTATATTTATGGCATTAGCTTATAATTGAAAAATTTCTTGATCATATTATTTTTCAGATCTACCTTAAGGAACTAGA AGTATTCCAGCTCAGTGTATATATACAAAAGTTGATCCTGAATGGAAAACTTAAAAACAAGGTTGAAGGGGATAAAAAGA ATAATCACAAAATATTCTAATACTGGGAAACTGGGTGTTGAACACCATCAAGTGCTCATTTGCGTCGGTTGCTTCTACGT AAGTGTCCAAAGCCAATGTCTTGATCTTGTCTGAAATTACCGTGCCACGACTGCATATGAGAAATGTTGAAAGTTTGGCA CCACCTTGGTTGATGATTGCGACACAACCTCTCGTGCCCAATATGGGATAAATATTCGGAATGAATGATGTACTGCTGAC CAGGTGATATATAGTTCTCGAATCAGCGCACTAGGAGTCGAAGATTTAAGATGATGTCAACCGTTAGCCAAGAAGGTATG AGTAAGTTCAACCACTTGATTTTGCAACGGTACATTCTCTTGTCAAAGCTCGGTCAAGCTAGTTAGTTGTAACATCTCAA CTATGACTCCAACTGCATCAATCCAACCGTTTGCATTCTCACTTAAAGTCTCCGACTTTGTCTACTGTCGAACATCTTCG CCTTAAAGTCTTCTCCTCAAGGACCTTGAAAATGTTTACAAGGGCCAACGATGAGCTTTAATGCTCACATAACATAGTGA ATCTTAAAGATCGAGTTAGAATCATGATGCAAA
CDS sequence (LotjaGi5g1v0228700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAGTAGCCAGAATCAGCAGCCGGAGCACGATTTGGAGTTAGAGAAAACTCGCTTAATCAGCTTAGCTCTCGA ATTCGGCTTCGACCAACACTCCGCCGACCAATGCTTCAACCGCCTCCTCGATCTCTACGGCGAAGACGGTCGCGATTTCA TCACCGTCGAGCACTGCGGCGACGATTTCCTCACGGTGTTGGCGGAGTCGATGCCAGCCACTGAGGAATGGGATGACGAT CCGCGCGAAATGGAGACTCAAGCTTGTGGAACGCTGTCTCACTTGCTTGAGAAAAGTGTTCCTGCTTCCGCTGATGGTGC CGCCTCCGCGTGCTTCATTGATGTTAGTGATGATTCGCCTCCTCAACCTCGCAAACTCCGAAGCAAAGTGGTGGAGTTGG GTTCCAGTGAAGATGAGGAGGATCGTGTGGAGTTTGGCTTTTCAAAGGGAAAATCTGCTGCATTTCCTGCTCAACATTCC CCAATTTCTGTGGATGGCAGAAGTGGCATAACCCAAGGCTCAGTTTCATCAACTTCCAGCAAGATACAATCCTCCTTTGC ATCGAAGGACAGATACAATACTCTAACTTATGAAGAATTGCAGGCGCTAGATGATATCGAATTGGCAAATGTTGTTATCT TTGGTAACAAGTCGCTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATG CCTACTGGGGGTGGTAAATCACTTTGCTATCAGCTTCCAGCAACTCTTCTACCTGGAGTTACAGTAGTTGTATCTCCCTT ACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTGAAGTTTGGAATACCTGCTACTTTTTTGAATTCTCAACAAA CTGCTTCCCAGGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCGTCATGCAAGCTCTTGTATGTGACACCAGAG AGAATTGCTGGAAATCAATCATTTCGTGAGATTCTAAAATACATGCATCAAAAGGGACTGCTTGCAGGTTTTGTTGTCGA TGAGGCACACTGTGTTAGCCAGTGGGGACATGATTTCCGTCCTGATTATCGGGCATTGGGATCTCTTAAGCTAAACTTTC CAGGTGTACCTATCATGGCATTGACTGCCACTGCAACCCACTCAGTTCGCGAGGACATCTTAAACGCTTTGAGAATCCCG CGTGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGGTAAGACAAAGGAACCGCTGAA GCAACTTGGAGAGCTAGTAATGGCTCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTGTCAAAGAATGAATGTGTTG AGGTCTCAAAGTTTTTGAATGAGAAATGTAAAATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGTCAGAGAGTT TCTATTCAAAAGAAATGGTATGACGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATTGACAAACC TGACGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAG ATAATCTTCCTTCAGTTTGCATTGCTCTGTACCAAAAGAAGGATTTTAGTAGAGTAGTATGCTTGATAAGAAACGGACAA GGATATAAAAGGGACAGTTTTAAGTTAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGTTGAATG TCGAAGAGAAACTTTGCTCAAACACTTTGGAGAAGATTTTGACAGAAAAGCATGCAAGCATGGATCTAACCCCTGTGATA ACTGTCTCAAGACTGCATCCTGA
Protein sequence (LotjaGi5g1v0228700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSSQNQQPEHDLELEKTRLISLALEFGFDQHSADQCFNRLLDLYGEDGRDFITVEHCGDDFLTVLAESMPATEEWDDD PREMETQACGTLSHLLEKSVPASADGAASACFIDVSDDSPPQPRKLRSKVVELGSSEDEEDRVEFGFSKGKSAAFPAQHS PISVDGRSGITQGSVSSTSSKIQSSFASKDRYNTLTYEELQALDDIELANVVIFGNKSLRPLQHQACKAALAKQDSFILM PTGGGKSLCYQLPATLLPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPE RIAGNQSFREILKYMHQKGLLAGFVVDEAHCVSQWGHDFRPDYRALGSLKLNFPGVPIMALTATATHSVREDILNALRIP RALVLERSFDRPNLKYEVIGKTKEPLKQLGELVMARFKNQCGIVYCLSKNECVEVSKFLNEKCKIKTVYYHAGLAARQRV SIQKKWYDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCLIRNGQ GYKRDSFKLAMAQAKKMQQYCELKVECRRETLLKHFGEDFDRKACKHGSNPCDNCLKTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 176 | 410 | 235 | 7.2E-82 | – | |
| PANTHER | 195 | 616 | 422 | 6.8E-178 | – | |
| PANTHER | 195 | 616 | 422 | 6.8E-178 | – | |
| TIGRFAM | 213 | 618 | 406 | 1.5E-150 | ||
| CDD | 213 | 410 | 198 | 4.66452E-96 | – | |
| SMART | 215 | 419 | 205 | 3.1E-26 | ||
| Pfam | 221 | 389 | 169 | 5.5E-15 | ||
| ProSiteProfiles | 227 | 403 | 177 | 19.783 | ||
| SUPERFAMILY | 259 | 555 | 297 | 1.14E-51 | ||
| Gene3D | 411 | 619 | 209 | 8.3E-61 | – | |
| CDD | 411 | 544 | 134 | 4.07647E-64 | – | |
| ProSiteProfiles | 425 | 575 | 151 | 18.481 | ||
| Pfam | 431 | 534 | 104 | 6.3E-16 | ||
| SMART | 453 | 535 | 83 | 1.7E-23 | ||
| Pfam | 547 | 616 | 70 | 1.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi5g1v0228700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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