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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0247000 |
| Transcript ID | LotjaGi5g1v0247000.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55542553..55549561) extracted from Lotus japonicus Gifu genome v1.2.
CCATTTTCAACTTCCTCATGTTCAGTGCCTGAGTGAGACTAGCTAACCAAAACCATATATCAACCTTCCCGCTCAGACAT AATCACAAACACTTCATCTTCATCTTCATCTTCATCTTCATCTTCCCCCAAATCACGAAATGAAATACGTTCTGATCACC GGAGGAGTCGTCAGCGGCCTCGGCAAAGGCGTCACCGCCAGCAGCATCGGCGTCGTGCTCAAAGCTTGTGGCCTCCGCGT CACTTCCATCAAAATCGGTTCTCTCTCACACTATCTTCTCTGTTTTTTGATTTTGTAGCAACTGTAAGTAATTTGCAATT GTTTTCTGCTTCTTCTGTAGATCCGTACTTGAACATAGACGCAGGGACCATGTCTCCGTTTGAGCACGGAGAGGTTTTTG TTCTTGATGATGGAGGAGAGGTTACTGTTTTTTCCATATTTATACCTGAACCTCTGCTTTGCTTCTTTGCATGCTTGAAT AGTTGAATTTGAATGTATTGAAGTGATTGAACTGGTGACTGGTGAATTGATTTATGCTCTTTTGATTTGGAAAGGTTGAT TTGGATTTGGGAAATTATGAGCGTTTTCTGGATGTTACTCTCACCAGGGATAACAACATCACCACTGGAAAAATCTACCA GGTAATTTGACAATGGAAATGAATAGTGCACTGTTGTAGAGACTAGTGAGTTTGATTTTGCTTTTGTGGCTTGACTTGTG TTTGTGTGTTTCTTGTGATCAGTCTGTTCTTGAGAAGGAGCGTAAAGGGGATTACCTTGGGAAGACTGTTCAGGTGATAA TGGTTCACGCGTGTGCCGTTTACATGTTGCTTGCTGTGTGTGCATTGTGATAAAGAGTTGGTTACTGATTTAGTGGCGTT TTAGGTGGTTCCGCACATCACTGATGCGATTAAAGATCGGATTGAGTCTGTTGCTGTGATCCCTGTGGGTGGAAATGAAG GGCCTGCTGATGTTTGCGTGATTGAGCTGGGAGGCACTGTGGGTAAGTTTTTTGGCTTTGGAAGAATGCTTATGTTCTGT TGGTGCTGCGTTATTTACTACAGTCAATAATTCGAGTCTTTCTACAGGTGATATTGAATCTATGCCTTTTATTGAGGCTC TGCGGCAATTGTCCTTTCAAGTGGGTATGGCAATATCATGCTTTTCTTCTAAACCAATTTTACACTCATTATATATTCAT TAGATAAAGATGTTTCAGGCATACTTGTCAGTATAGTAATTACCCCCCATATGTATGCTATTCTTAACCATTATTCTTTT GTCACAATTATTTACTATAGAATTTCTGATCCCTGCCCTTGTTTTTGACGAGGAAAGCCTTTTAATTTAATTTTTTTTGA AGCTCCCCTAATCACCCTAATATTACAGGTAAGATGCTTTTTATTTGACAACAAAATAATGATATAGATTTTCTTGTTTG CCTCTTGCACAATACATATAATTTAAGTACTCAAGTAGGCGTGAGCTTGTCAGTGCTTGATACGCAAATTTCAGGTTGAA CTGTTGCATAAATCTTTTATGTTTCATTTGTGCTGTCCTATTACTGAAGAATTCATTCATGTATAGTTCTGTTGTTATAC TGCTTAATTAATCTATGTATAGTACTATAATTCAATTAAGTTGCTGATGGACATGTTCTTTGATGTTCAAATTTATTATA ATTTTTTTTTATATGGCCATGAAATGTTATCTTGACGCATGATACAATTTTCACACTTTTACTCTCACTATTCCTTCTCA GGACCTGACAACTTCTGTCTCATCCATGTTAGCCTGATACCAGTGTTGGGTGTAGTGGGAGAGCAAGTAATACTTAATTA CTTGTGCATTACTGTTGCAAACTTTTAGTTGTTTTTTTTCCCCTTCTCATGTTGAGTGCAATATTCTGCTTCTAGAAAAC AAAGCCTACACAACACAGTGTCAGGGAACTGAGAGCATTGGGCTTGACGCCTCATCTTTTAGCCAGTCGCTCTGCTGAGG TTTATCATTCCACCATTTGGTTCCTGGTTGCATTTACAAAATGTTTATCTGTGTAATGAAACATGTATAATTTTGTAAAA TTTAACAATAAATTCGTACTGAATGTCATTTATTTTTGGAAATGAAGTCCACTTGTCATGTGACATTAGTTTTGCTCTTG CTTCCCTTGTAAAAATATGTTGTGACAAACACGTGATTATGCTAAAAAATGTTCTTGCTCTGCAATTCTATATTTAGGAG AATACAATGATTACTTGAATCTCTTTATGCTCATCTTTTCTTCAGTATTTTGTTAATGTCTCCTTCTGTTTTGAGATTTA TCTTTGATGGTGGCTTGGTAACATTAGTAGCTGAAATATTTGTTATTGAATGCGGCAGCCTCTACTCCAAAGTACCAAGG AAAAACTGTCACAGTTTTGCCATGTTCCAGTAAGTTAGTTGTTGAACCGAGCTTGGTTGTTCTCCAAGCAAGCATTGTTT TACTATTGATCTATATTTTCTGTATATTTTTTCACAGGTTGATAATATTCTGAATATCCATGATGTACCAAACATTTGGC ACATTCCCCTTTTACTTAGAGTGAGTCTATAATAAAGTTTTGGTTCCATTGAAGATTACTTGCTTTGGTTCATATTTTTT GTAATTTTTTCTTCCTGATTGACTGTTATTTTCAGAACCAAAATGCTCACCATTCAATTCTACAGCAGCTTAACTTACTC AAGTGAGTTCTTAACTGTTTTCCTTTTCCTTTTGAAAAATACAGTGACAATGGAAATATCAATCTACTTCACTTTTTATT TTTTTCAGCCACGCCACACCTCCTGATTTACAACAATGGACAGAGATGGCGGAGTCCTATGATAATCTTACTGTATCTGT CAGTACTATGTCTATGTGTAGTTTACATTGCTCTTTCTAAATTTATCATAAAATATTGTGCATGAGAGTGAGAGCGTTTT GAATTTTACAGGTGAGGATTGCAATGGTGGGAAAATATGTTGGTCTAACTGATTCATATTTATCTGTTGTAAAGGTGTGT TCTATCTTTCGTTTGATATTTATCATAAGAATAACAGGATTGCAGCATATTTTATGGAATTGTTTAGTAAAGAGCAGTAT ATTTAGTGACGAATACGTGAACATGATAATAGCATTTAAATATTTGTTCATATTTTTTGCTTTTAGTCTGCTTCTTTCCA TAAATGTGATCCATTTATAATCATCTGAGTTTCATGTTAACACTTTATCCTTAAAATTGTTATTTCCTAACATGCATGCT TTATTGTTCTATATAATCTATATTCGGAAGTCTAAAAATAAGTTAGGAGCATCAGCACAATGCCACAATCTGATTGTTGA GTAGTGGTTTTTTAAAATAATTTTTTTGGTTTTTACCAGCCATATATAAGTCAATACAAGGGTGGACTTGCCCCTGTTAT GGCATTGAAATTTTCTGAACATTATTTTAGCATTTTAATACCGGAATTGTTTACAGGCCCTTCTGCATGCTTGCGTTGCT AGTTCATTGAAGCCATCCATTGACTGGATTGCTGCTTCTGACCTTGAAGATGACAGTGCGGAATCCGTAATGATTTCTTT CAAATTGCATTTGAATATATTTGATCACTTGTTGATGTTCAGGTACATAGACTTTTTCATAATGGTTTTACTCTTTCAGA CACCAGAAGCACATGCTGCAGCGTGGACGACTCTGAGGGTAAGAACACCAGAAACGCATGCAGTTTATGGAAGTGTAGTC TATTATATTGGGAAGTGTGGTGGGCAAATGTTGAGACATTTGGTCTTGAGATTATGTGGTCCTGCTAGATTTTTGGTTCC TTTTAGTTGATTGATAAAATGTCATTTTTTCTGTGCATTTATTATCTATGATTGATTTGTTGGATTATCATTAAAATTTG ATTCATATTAAATATAATACAAGGATGTTTTGCTTTTGAATCTGTAATCACCGCCATTTTGGGAAATTGACACTTGCAGA GCGCAGCTTGTGTCTTGGTTCCTGGGGGATTTGGAGATCGTGGTGTGAGAGGTATGATGCTAGCTGCCAAATATGCTAGA GAGAACAATGTTCCTTACCTAGGGATTTGCTTGGGCATGCAAATTGCTGTAATTGAGTTTGCTAGATCAGTAAGTAAAAT TTCTGTTTACTTCATGTTTGGTACTTCATGACCACATGCTTTTATTATTGTGACTTAACATTCATTCATAGGTTTTGGGG TTGGAAAGAGCAAACAGTGTAGAGTTTGATGCCCAAACACCAAATCCTGTTGTGATTTTCATGCCAGAGGTATATATGTC TGATCTCTTCCTCCTTCCCTCCCCACTCTTTCAATTCCTTTTTTAGTAATGTGTCTGAGACTAACAGGGTTCACGAACGC ATATGGGAAGTACCATGAGGCTTGGATCTCGAAGAACACTCTTACAGACACCTGATTGTATCACTTCCAAGCTGTATGTG ATATTAGCTATTTTACTATTGTAGTATTTTAATGATTAATGAAATAATGAATAAAGAACAAGGCTACAAATTGCTTTGAT GAAAATAGCTCATCTTTCTTTTTCATAAATATAACTTTTTGTTTTTTTTTTATAAGCCAAAAGATTGTATTAAAAGAGGG TACAAGGGGTACCCCAACCCTTAATACGAGTCAATAAAAAGAGAAAGGAGAAGGAAAAGCAAAACAACAAAGAGAAAAGA ACATGACAAAAGAACAAAACCAGGTTGATAAACAAATCTTCAAATTTCGCCAATAGCCCAACATAACAACCCTGTGCAAA ACAGTCTTCAATAATATTTCAGATTGTAGAAATAGGCAGCAGAAGTGATCCAATTAGGTCTGGTTGTGTTCAAGTTCTCG ATTATCTAGGGATGGTTCCATCTCGATGAATATTAGAATTGGTTCATAATTTTGTGATCGTCTTATTTCAAAGTGTTTTG GATTCAATTCTACCTTCACAGTAGATGAGGGGTTTTTTCAAGGGAAGGGGTGGCCCATATGGCTTTCCCTTCCCCAAAAA TTGATGAATAGCAAAAAGAAAATCTGTCAGGCGGGGTTATTTATAATTTTCCTTTGTAGCCCTTGAGAATAGCCTTGGGT CTGAAATAATGAGCTCTGATATTTTTGATATACGAGTATGTAATAAGTTCTTACTTACATCCATATTTATTGATCCTTCA GTATGCTGAATTATGCAGTTCAGTCGGAATTAGACTCCAATATCATTATGTGGCTGCCTTTATGATTACAAAATGTTCTC AGCTCATATGTTATGCATATTAACATCTTTGCATCTTCCTAATTTTTAGGTACGGAAATTCAGAGTATGTGGATGAACGA CATCGACATAGATATGAGGTTTGACTTTTAACCTTTTTTTGTGACTGGATGTTCAAGTGACGTGTAGTATGCATCCAGTA ATTTAGCACTGAATCGTGCAGGTAAATCCGGATGTTATTGGAACTTTAGAAGAAGGTGGGCTAAAATTTGTTGGGAAGGA TGAAAGTGGAAAACGAATGGAGGTGAGTTTTCTGCTTGGCAGGGTTTTGGTGGGAAGCAATACTACATAGAATCAAACTT GAAAGTCTGACAGTTTCAATTGGATGCAGTTGCATTTGTTGTCCTGCTTTTGTGTTTTTCTATTTTTCTGCTACACACAA TTCACTTCTTTCATTACTTGTTTTATGAATTAGAATGCAATTATTTTCAGGATTTTAAGAAATTCTCTCTCTTGTGCAGA TTTTAGAGCTTCCAAGTCATCCATTCTATGTAGGTGTGCAATTCCACCCAGAATTTAAGTCACGGCCAGGGAGACCATCT GCTTTGTTTTTAGGTACTTGTCACCCACAAATTAGCTTTTCATATTTCATTTCTTTAAACATGATGAGAAATGAAGAGTA TCATCAAATAAATGTTTAATACCATCTTCAATTCATGTTTTGTTCATGTTACCTATTTATGATGCTGCACCTATAGGTCT CATATTGGCAGCAACAGGGAGGTTGGAAGCACATGTTAGTAGGCATCAGAATGGATGCTGATATAAGATTTGTAACTGTA GGACTCACTTCTACAATATTTTTGTAAGGTAAGCTGGTTCTTTAAAGGGAAAATAGTTGGGGAAGGGAAGGGAATGGGAA CTGAAGGATGAAATATGGGAAACCCTGAGGTGGAGTATGTGTGCAGCTGCCCCATGCTTCTCTAGGTTGGTTCTCATTCA TATTAGTTGCAGAGTAATATTATTTTCACCCACACATTCAATTTAATTTTCATATTTAATCAACTTAGTGGTCAGAAGAT GCTAAAGTAGGTTACAAATACTAGTATATCTGCTGCCTGTGACTTGACAAAATCACAGCTAGAATAGTAACTTTGTTGGG CTAAGAAGGGTTTCCCATTCCTTTTCTGATATCGGCAAGTCTTGACCACAATTTATTAAATAAATTTGGGGTATGGTCAA ACCTTTCCTGTTAGGTGGAGCTTGCTGTGGATGTAATACCATGTCTTCTGATATAACATTTCATTCTTGTCTTCTTCCAC CTTTATTACAGAACAAAAAATGTACTCGTTATTCGATATGCATAGAGGTCTGAAGCAGAGCTAATTTTTTGGCTACATCA TGAGCAAGTTAATTTCCTTTTCAAAGCTGACCATTAACCTGGCACTTAAGAATTTATACATTTACTGACTGAAACTCTAA GATTGTTTCCTTGTTCAGAGTTCACCATGTCAGTGATGCTTCATTGTATGTTCGCTTAATCGCTTGTTTAGGTTTTGCAT TTTCTATTCAAGAGCTGTAAGTAGAACCAAGAGGTGATATATATGGATTGATTTTTTTTTACCTGTAAGAAACTTGAAGA AAAAACAGAAAAAATCTAACGCTTTGCAGTTAATTTATTATCATCGTCATCATATTGTTTTACTCTTTTTTTTTTTCTAT ATTGGACTTTATATATGGGTACTTATGGATGGAAAAAATGATGAATTCC
CDS sequence (LotjaGi5g1v0247000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATACGTTCTGATCACCGGAGGAGTCGTCAGCGGCCTCGGCAAAGGCGTCACCGCCAGCAGCATCGGCGTCGTGCT CAAAGCTTGTGGCCTCCGCGTCACTTCCATCAAAATCGATCCGTACTTGAACATAGACGCAGGGACCATGTCTCCGTTTG AGCACGGAGAGGTTTTTGTTCTTGATGATGGAGGAGAGGTTGATTTGGATTTGGGAAATTATGAGCGTTTTCTGGATGTT ACTCTCACCAGGGATAACAACATCACCACTGGAAAAATCTACCAGTCTGTTCTTGAGAAGGAGCGTAAAGGGGATTACCT TGGGAAGACTGTTCAGGTGGTTCCGCACATCACTGATGCGATTAAAGATCGGATTGAGTCTGTTGCTGTGATCCCTGTGG GTGGAAATGAAGGGCCTGCTGATGTTTGCGTGATTGAGCTGGGAGGCACTGTGGGTGATATTGAATCTATGCCTTTTATT GAGGCTCTGCGGCAATTGTCCTTTCAAGTGGGACCTGACAACTTCTGTCTCATCCATGTTAGCCTGATACCAGTGTTGGG TGTAGTGGGAGAGCAAAAAACAAAGCCTACACAACACAGTGTCAGGGAACTGAGAGCATTGGGCTTGACGCCTCATCTTT TAGCCAGTCGCTCTGCTGAGCCTCTACTCCAAAGTACCAAGGAAAAACTGTCACAGTTTTGCCATGTTCCAGTTGATAAT ATTCTGAATATCCATGATGTACCAAACATTTGGCACATTCCCCTTTTACTTAGAAACCAAAATGCTCACCATTCAATTCT ACAGCAGCTTAACTTACTCAACCACGCCACACCTCCTGATTTACAACAATGGACAGAGATGGCGGAGTCCTATGATAATC TTACTGTATCTGTGAGGATTGCAATGGTGGGAAAATATGTTGGTCTAACTGATTCATATTTATCTGTTGTAAAGGCCCTT CTGCATGCTTGCGTTGCTAGTTCATTGAAGCCATCCATTGACTGGATTGCTGCTTCTGACCTTGAAGATGACAGTGCGGA ATCCACACCAGAAGCACATGCTGCAGCGTGGACGACTCTGAGGAGCGCAGCTTGTGTCTTGGTTCCTGGGGGATTTGGAG ATCGTGGTGTGAGAGGTATGATGCTAGCTGCCAAATATGCTAGAGAGAACAATGTTCCTTACCTAGGGATTTGCTTGGGC ATGCAAATTGCTGTAATTGAGTTTGCTAGATCAGTTTTGGGGTTGGAAAGAGCAAACAGTGTAGAGTTTGATGCCCAAAC ACCAAATCCTGTTGTGATTTTCATGCCAGAGGGTTCACGAACGCATATGGGAAGTACCATGAGGCTTGGATCTCGAAGAA CACTCTTACAGACACCTGATTGTATCACTTCCAAGCTGTACGGAAATTCAGAGTATGTGGATGAACGACATCGACATAGA TATGAGGTAAATCCGGATGTTATTGGAACTTTAGAAGAAGGTGGGCTAAAATTTGTTGGGAAGGATGAAAGTGGAAAACG AATGGAGATTTTAGAGCTTCCAAGTCATCCATTCTATGTAGGTGTGCAATTCCACCCAGAATTTAAGTCACGGCCAGGGA GACCATCTGCTTTGTTTTTAGGTCTCATATTGGCAGCAACAGGGAGGTTGGAAGCACATGTTAGTAGGCATCAGAATGGA TGCTGA
Protein sequence (LotjaGi5g1v0247000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYVLITGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNIDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV TLTRDNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKDRIESVAVIPVGGNEGPADVCVIELGGTVGDIESMPFI EALRQLSFQVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLASRSAEPLLQSTKEKLSQFCHVPVDN ILNIHDVPNIWHIPLLLRNQNAHHSILQQLNLLNHATPPDLQQWTEMAESYDNLTVSVRIAMVGKYVGLTDSYLSVVKAL LHACVASSLKPSIDWIAASDLEDDSAESTPEAHAAAWTTLRSAACVLVPGGFGDRGVRGMMLAAKYARENNVPYLGICLG MQIAVIEFARSVLGLERANSVEFDAQTPNPVVIFMPEGSRTHMGSTMRLGSRRTLLQTPDCITSKLYGNSEYVDERHRHR YEVNPDVIGTLEEGGLKFVGKDESGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATGRLEAHVSRHQNG C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 1 | 272 | 272 | 7.5E-120 | ||
| TIGRFAM | 1 | 544 | 544 | 1.7E-225 | ||
| PANTHER | 1 | 560 | 560 | 0.0 | ||
| Hamap | 1 | 550 | 550 | 45.751 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 560 | 560 | 0.0 | – | |
| Gene3D | 1 | 293 | 293 | 6.1E-143 | – | |
| CDD | 2 | 267 | 266 | 0.0 | – | |
| Pfam | 2 | 272 | 271 | 1.9E-123 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 561 | 541 | - | – | |
| Gene3D | 295 | 559 | 265 | 1.1E-111 | ||
| SUPERFAMILY | 297 | 549 | 253 | 4.77E-67 | ||
| CDD | 298 | 543 | 246 | 8.48727E-132 | ||
| ProSiteProfiles | 299 | 552 | 254 | 20.641 | ||
| Pfam | 309 | 543 | 235 | 9.3E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | CTP synthase activity | Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | CTP biosynthetic process | The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. |
Expression pattern of LotjaGi5g1v0247000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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