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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017926
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We have found 50 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.795s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058939.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
3 domain predictions
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Lj0g3v0058939.2
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
3 domain predictions
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Lj0g3v0103749.1
n.a. PREDICTED: protein NtpR-like isoform X1 [Cicer arietinum] gi|502106503|ref|XP_004492963.1| chr0 44263003 44264836 -
2 domain predictions
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Lj0g3v0111539.1
n.a. Anthranilate synthase beta subunit 1 [Theobroma cacao] gi|508709407|gb|EOY01304.1| chr0 48463743 48464833 +
2 domain predictions
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Lj0g3v0281729.1
n.a. PREDICTED: CTP synthase 1-like [Cicer arietinum] gi|502154191|ref|XP_004509615.1| chr0 146084319 146088177 -
3 domain predictions
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Lj0g3v0332949.1
n.a. PREDICTED: CTP synthase-like isoform X1 [Cicer arietinum] gi|502182968|ref|XP_004517030.1| chr0 174235745 174241935 -
3 domain predictions
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Lj1g3v1276960.1
n.a. Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477161|ref|XP_003608866.1| chr1 15241074 15244060 +
3 domain predictions
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Lj1g3v1276960.2
n.a. Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477159|ref|XP_003608865.1| chr1 15241191 15244060 +
3 domain predictions
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Lj2g3v1106420.1
n.a. PREDICTED: anthranilate synthase component II-like [Cicer arietinum] gi|502164732|ref|XP_004513238.1| chr2 17902662 17906315 +
3 domain predictions
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Lj2g3v1129570.1
n.a. PREDICTED: anthranilate synthase component II-like isoform X1 [Cicer arietinum] gi|502168341|ref|XP_004514366.1| chr2 17997519 18000602 +
3 domain predictions
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Lj3g3v0937760.1
n.a. PREDICTED: CTP synthase-like isoform 1 [Glycine max] gi|356525714|ref|XP_003531468.1| chr3 11228968 11234950 +
3 domain predictions
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Lj4g3v0014330.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr4 199819 204349 +
3 domain predictions
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Lj4g3v0386190.1
n.a. GMP synthase [Medicago truncatula] gi|357492799|ref|XP_003616688.1| chr4 5051508 5054227 -
3 domain predictions
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Lj4g3v2016180.1
n.a. Class I glutamine amidotransferase-like superfamily protein [Theobroma cacao] gi|508784268|gb|EOY31524.1| chr4 27926397 27928518 -
2 domain predictions
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Lj4g3v2963440.1
n.a. PREDICTED: GMP synthase [glutamine]-hydrolyzing] gi|502139270|ref|XP_004503710.1| chr4 39204105 39207135 -
3 domain predictions
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Lj5g3v1601850.1
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263598 23270502 +
3 domain predictions
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Lj5g3v1601850.2
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263886 23270502 +
3 domain predictions
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Lj5g3v1601850.3
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263886 23270502 +
3 domain predictions
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Lj5g3v1816230.1
n.a. PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356533973|ref|XP_003535532.1| chr5 26114777 26125370 +
3 domain predictions
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Lj5g3v1816230.2
n.a. PREDICTED: para-aminobenzoate synthase-like [Cicer arietinum] gi|502118478|ref|XP_004496287.1| chr5 26114777 26125370 +
3 domain predictions
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Lj5g3v1816230.4
n.a. PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356574601|ref|XP_003555434.1| chr5 26115011 26125370 +
2 domain predictions
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Lj6g3v2192310.1
n.a. GMP synthase [Medicago truncatula] gi|357446005|ref|XP_003593280.1| chr6 25318477 25321533 +
3 domain predictions
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LotjaGi1g1v0315900.1
n.a. Carbamoyl-phosphate synthase small chain; TAIR: AT3G27740.1 carbamoyl phosphate synthetase A; Swiss-Prot: sp|Q9LVW7|CARA_ARATH Carbamoyl-phosphate synthase small chain, chloroplastic; TrEMBL-Plants: tr|I3SBA2|I3SBA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315900 LjG1.1_chr1 76219015 76227574 +
3 domain predictions
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LotjaGi1g1v0546400.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi1g1v0546400 LjG1.1_chr1 107614736 107617166 +
2 domain predictions
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LotjaGi2g1v0239200.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 LjG1.1_chr2 70038625 70040962 -
2 domain predictions
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LotjaGi2g1v0239200.2
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G66860.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 LjG1.1_chr2 70038867 70040819 -
2 domain predictions
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LotjaGi2g1v0271300.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G25220.1 anthranilate synthase beta subunit 1; Swiss-Prot: sp|Q42565|ASB1_ARATH Anthranilate synthase beta subunit 1, chloroplastic; TrEMBL-Plants: tr|B7FJB9|B7FJB9_MEDTR Anthranilate synthase component II; Found in the gene: LotjaGi2g1v0271300 LjG1.1_chr2 74215149 74219566 -
3 domain predictions
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LotjaGi2g1v0405000.1
n.a. Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi2g1v0405000 LjG1.1_chr2 90181224 90185452 -
2 domain predictions
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LotjaGi3g1v0130200.1
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 LjG1.1_chr3 16266075 16279130 +
3 domain predictions
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LotjaGi3g1v0130200.2
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 LjG1.1_chr3 16266882 16272249 +
3 domain predictions
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LotjaGi3g1v0300500.1
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A072TPJ2|A0A072TPJ2_MEDTR CTP synthase; Found in the gene: LotjaGi3g1v0300500 LjG1.1_chr3 62637715 62645182 -
3 domain predictions
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LotjaGi4g1v0002000.1
n.a. Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT4G26900.1 HIS HF; Swiss-Prot: sp|Q9SZ30|HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic; TrEMBL-Plants: tr|I1N0Y1|I1N0Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002000 LjG1.1_chr4 378079 395782 +
3 domain predictions
 –
LotjaGi4g1v0002000.2
n.a. Imidazole glycerol phosphate synthase subunit hisH; TAIR: AT4G26900.1 HIS HF; Swiss-Prot: sp|Q9SZ30|HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic; TrEMBL-Plants: tr|A0A0L9TE25|A0A0L9TE25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002000 LjG1.1_chr4 378593 380743 +
3 domain predictions
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LotjaGi4g1v0040500.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A0A0L9TAE1|A0A0L9TAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040500 LjG1.1_chr4 4775975 4778770 -
3 domain predictions
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LotjaGi4g1v0149400.1
n.a. CTP synthase; TAIR: AT1G30820.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|A0A0S3R418|A0A0S3R418_PHAAN CTP synthase; Found in the gene: LotjaGi4g1v0149400 LjG1.1_chr4 24401313 24414710 -
3 domain predictions
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LotjaGi4g1v0149400.2
n.a. CTP synthase; TAIR: AT1G30820.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|A0A0S3R418|A0A0S3R418_PHAAN CTP synthase; Found in the gene: LotjaGi4g1v0149400 LjG1.1_chr4 24401418 24407275 -
3 domain predictions
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LotjaGi4g1v0291400.1
n.a. Class I glutamine amidotransferase; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A5BCK9|A5BCK9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0291400 LjG1.1_chr4 66308726 66310620 -
2 domain predictions
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LotjaGi4g1v0426900.1
n.a. GMP synthase [glutamine]-hydrolyzing] protein; TAIR: AT1G63660.1 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase; Swiss-Prot: sp|Q89N53|GUAA_BRADU GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|A0A0L9VPW7|A0A0L9VPW7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0426900 LjG1.1_chr4 80170474 80174578 -
3 domain predictions
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LotjaGi5g1v0247000.1
n.a. CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 LjG1.1_chr5 55542234 55551026 +
3 domain predictions
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LotjaGi5g1v0247000.2
n.a. CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 LjG1.1_chr5 55542553 55549561 +
3 domain predictions
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LotjaGi5g1v0247000.3
n.a. CTP synthase; TAIR: AT4G02120.3 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A151U4J8|A0A151U4J8_CAJCA CTP synthase; Found in the gene: LotjaGi5g1v0247000 LjG1.1_chr5 55542692 55547082 +
3 domain predictions
 –
LotjaGi5g1v0247000.4
n.a. CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 LjG1.1_chr5 55542692 55548613 +
3 domain predictions
 –
LotjaGi5g1v0247000.5
n.a. CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 LjG1.1_chr5 55542692 55548613 +
3 domain predictions
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LotjaGi5g1v0275400.1
n.a. Aminodeoxychorismate synthase; TAIR: AT2G28880.1 para-aminobenzoate (PABA) synthase family protein; Swiss-Prot: sp|Q6TAS3|ADCS_SOLLC Aminodeoxychorismate synthase, chloroplastic; TrEMBL-Plants: tr|K7LKM5|K7LKM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0275400 LjG1.1_chr5 58942971 58954388 +
3 domain predictions
 –
LotjaGi5g1v0275400.2
n.a. Aminodeoxychorismate synthase; TAIR: AT2G28880.1 para-aminobenzoate (PABA) synthase family protein; Swiss-Prot: sp|Q6TAS3|ADCS_SOLLC Aminodeoxychorismate synthase, chloroplastic; TrEMBL-Plants: tr|K7LKM5|K7LKM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0275400 LjG1.1_chr5 58943118 58953787 +
3 domain predictions
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LotjaGi5g1v0336800.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|G7IC70|G7IC70_MEDTR Class I glutamine amidotransferase; Found in the gene: LotjaGi5g1v0336800 LjG1.1_chr5 65402546 65405731 +
2 domain predictions
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LotjaGi6g1v0063600.1
n.a. Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 LjG1.1_chr6 11735956 11745510 -
2 domain predictions
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LotjaGi6g1v0063600.2
n.a. Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 LjG1.1_chr6 11740008 11745510 -
2 domain predictions
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LotjaGi6g1v0063600.3
n.a. Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 LjG1.1_chr6 11740911 11745062 -
2 domain predictions
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LotjaGi6g1v0348700.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A2Q1P2|A2Q1P2_MEDTR Class I glutamine amidotransferase; Found in the gene: LotjaGi6g1v0348700 LjG1.1_chr6 66144326 66147659 +
3 domain predictions
 –