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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0247000 |
| Transcript ID | LotjaGi5g1v0247000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55542692..55548613) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATACGTTCTGATCACCGGAGGAGTCGTCAGCGGCCTCGGCAAAGGCGTCACCGCCAGCAGCATCGGCGTCGTGCT CAAAGCTTGTGGCCTCCGCGTCACTTCCATCAAAATCGGTTCTCTCTCACACTATCTTCTCTGTTTTTTGATTTTGTAGC AACTGTAAGTAATTTGCAATTGTTTTCTGCTTCTTCTGTAGATCCGTACTTGAACATAGACGCAGGGACCATGTCTCCGT TTGAGCACGGAGAGGTTTTTGTTCTTGATGATGGAGGAGAGGTTACTGTTTTTTCCATATTTATACCTGAACCTCTGCTT TGCTTCTTTGCATGCTTGAATAGTTGAATTTGAATGTATTGAAGTGATTGAACTGGTGACTGGTGAATTGATTTATGCTC TTTTGATTTGGAAAGGTTGATTTGGATTTGGGAAATTATGAGCGTTTTCTGGATGTTACTCTCACCAGGGATAACAACAT CACCACTGGAAAAATCTACCAGGTAATTTGACAATGGAAATGAATAGTGCACTGTTGTAGAGACTAGTGAGTTTGATTTT GCTTTTGTGGCTTGACTTGTGTTTGTGTGTTTCTTGTGATCAGTCTGTTCTTGAGAAGGAGCGTAAAGGGGATTACCTTG GGAAGACTGTTCAGGTGATAATGGTTCACGCGTGTGCCGTTTACATGTTGCTTGCTGTGTGTGCATTGTGATAAAGAGTT GGTTACTGATTTAGTGGCGTTTTAGGTGGTTCCGCACATCACTGATGCGATTAAAGATCGGATTGAGTCTGTTGCTGTGA TCCCTGTGGGTGGAAATGAAGGGCCTGCTGATGTTTGCGTGATTGAGCTGGGAGGCACTGTGGGTAAGTTTTTTGGCTTT GGAAGAATGCTTATGTTCTGTTGGTGCTGCGTTATTTACTACAGTCAATAATTCGAGTCTTTCTACAGGTGATATTGAAT CTATGCCTTTTATTGAGGCTCTGCGGCAATTGTCCTTTCAAGTGGGTATGGCAATATCATGCTTTTCTTCTAAACCAATT TTACACTCATTATATATTCATTAGATAAAGATGTTTCAGGCATACTTGTCAGTATAGTAATTACCCCCCATATGTATGCT ATTCTTAACCATTATTCTTTTGTCACAATTATTTACTATAGAATTTCTGATCCCTGCCCTTGTTTTTGACGAGGAAAGCC TTTTAATTTAATTTTTTTTGAAGCTCCCCTAATCACCCTAATATTACAGGTAAGATGCTTTTTATTTGACAACAAAATAA TGATATAGATTTTCTTGTTTGCCTCTTGCACAATACATATAATTTAAGTACTCAAGTAGGCGTGAGCTTGTCAGTGCTTG ATACGCAAATTTCAGGTTGAACTGTTGCATAAATCTTTTATGTTTCATTTGTGCTGTCCTATTACTGAAGAATTCATTCA TGTATAGTTCTGTTGTTATACTGCTTAATTAATCTATGTATAGTACTATAATTCAATTAAGTTGCTGATGGACATGTTCT TTGATGTTCAAATTTATTATAATTTTTTTTTATATGGCCATGAAATGTTATCTTGACGCATGATACAATTTTCACACTTT TACTCTCACTATTCCTTCTCAGGACCTGACAACTTCTGTCTCATCCATGTTAGCCTGATACCAGTGTTGGGTGTAGTGGG AGAGCAAGTAATACTTAATTACTTGTGCATTACTGTTGCAAACTTTTAGTTGTTTTTTTTCCCCTTCTCATGTTGAGTGC AATATTCTGCTTCTAGAAAACAAAGCCTACACAACACAGTGTCAGGGAACTGAGAGCATTGGGCTTGACGCCTCATCTTT TAGCCAGTCGCTCTGCTGAGGTTTATCATTCCACCATTTGGTTCCTGGTTGCATTTACAAAATGTTTATCTGTGTAATGA AACATGTATAATTTTGTAAAATTTAACAATAAATTCGTACTGAATGTCATTTATTTTTGGAAATGAAGTCCACTTGTCAT GTGACATTAGTTTTGCTCTTGCTTCCCTTGTAAAAATATGTTGTGACAAACACGTGATTATGCTAAAAAATGTTCTTGCT CTGCAATTCTATATTTAGGAGAATACAATGATTACTTGAATCTCTTTATGCTCATCTTTTCTTCAGTATTTTGTTAATGT CTCCTTCTGTTTTGAGATTTATCTTTGATGGTGGCTTGGTAACATTAGTAGCTGAAATATTTGTTATTGAATGCGGCAGC CTCTACTCCAAAGTACCAAGGAAAAACTGTCACAGTTTTGCCATGTTCCAGTAAGTTAGTTGTTGAACCGAGCTTGGTTG TTCTCCAAGCAAGCATTGTTTTACTATTGATCTATATTTTCTGTATATTTTTTCACAGGTTGATAATATTCTGAATATCC ATGATGTACCAAACATTTGGCACATTCCCCTTTTACTTAGAGTGAGTCTATAATAAAGTTTTGGTTCCATTGAAGATTAC TTGCTTTGGTTCATATTTTTTGTAATTTTTTCTTCCTGATTGACTGTTATTTTCAGAACCAAAATGCTCACCATTCAATT CTACAGCAGCTTAACTTACTCAAGTGAGTTCTTAACTGTTTTCCTTTTCCTTTTGAAAAATACAGTGACAATGGAAATAT CAATCTACTTCACTTTTTATTTTTTTCAGCCACGCCACACCTCCTGATTTACAACAATGGACAGAGATGGCGGAGTCCTA TGATAATCTTACTGTATCTGTCAGTACTATGTCTATGTGTAGTTTACATTGCTCTTTCTAAATTTATCATAAAATATTGT GCATGAGAGTGAGAGCGTTTTGAATTTTACAGGTGAGGATTGCAATGGTGGGAAAATATGTTGGTCTAACTGATTCATAT TTATCTGTTGTAAAGGTGTGTTCTATCTTTCGTTTGATATTTATCATAAGAATAACAGGATTGCAGCATATTTTATGGAA TTGTTTAGTAAAGAGCAGTATATTTAGTGACGAATACGTGAACATGATAATAGCATTTAAATATTTGTTCATATTTTTTG CTTTTAGTCTGCTTCTTTCCATAAATGTGATCCATTTATAATCATCTGAGTTTCATGTTAACACTTTATCCTTAAAATTG TTATTTCCTAACATGCATGCTTTATTGTTCTATATAATCTATATTCGGAAGTCTAAAAATAAGTTAGGAGCATCAGCACA ATGCCACAATCTGATTGTTGAGTAGTGGTTTTTTAAAATAATTTTTTTGGTTTTTACCAGCCATATATAAGTCAATACAA GGGTGGACTTGCCCCTGTTATGGCATTGAAATTTTCTGAACATTATTTTAGCATTTTAATACCGGAATTGTTTACAGGCC CTTCTGCATGCTTGCGTTGCTAGTTCATTGAAGCCATCCATTGACTGGATTGCTGCTTCTGACCTTGAAGATGACAGTGC GGAATCCGTAATGATTTCTTTCAAATTGCATTTGAATATATTTGATCACTTGTTGATGTTCAGGTACATAGACTTTTTCA TAATGGTTTTACTCTTTCAGACACCAGAAGCACATGCTGCAGCGTGGACGACTCTGAGGGTAAGAACACCAGAAACGCAT GCAGTTTATGGAAGTGTAGTCTATTATATTGGGAAGTGTGGTGGGCAAATGTTGAGACATTTGGTCTTGAGATTATGTGG TCCTGCTAGATTTTTGGTTCCTTTTAGTTGATTGATAAAATGTCATTTTTTCTGTGCATTTATTATCTATGATTGATTTG TTGGATTATCATTAAAATTTGATTCATATTAAATATAATACAAGGATGTTTTGCTTTTGAATCTGTAATCACCGCCATTT TGGGAAATTGACACTTGCAGAGCGCAGCTTGTGTCTTGGTTCCTGGGGGATTTGGAGATCGTGGTGTGAGAGGTATGATG CTAGCTGCCAAATATGCTAGAGAGAACAATGTTCCTTACCTAGGGATTTGCTTGGGCATGCAAATTGCTGTAATTGAGTT TGCTAGATCAGTAAGTAAAATTTCTGTTTACTTCATGTTTGGTACTTCATGACCACATGCTTTTATTATTGTGACTTAAC ATTCATTCATAGGTTTTGGGGTTGGAAAGAGCAAACAGTGTAGAGTTTGATGCCCAAACACCAAATCCTGTTGTGATTTT CATGCCAGAGGTATATATGTCTGATCTCTTCCTCCTTCCCTCCCCACTCTTTCAATTCCTTTTTTAGTAATGTGTCTGAG ACTAACAGGGTTCACGAACGCATATGGGAAGTACCATGAGGCTTGGATCTCGAAGAACACTCTTACAGACACCTGATTGT ATCACTTCCAAGCTGTATGTGATATTAGCTATTTTACTATTGTAGTATTTTAATGATTAATGAAATAATGAATAAAGAAC AAGGCTACAAATTGCTTTGATGAAAATAGCTCATCTTTCTTTTTCATAAATATAACTTTTTGTTTTTTTTTTATAAGCCA AAAGATTGTATTAAAAGAGGGTACAAGGGGTACCCCAACCCTTAATACGAGTCAATAAAAAGAGAAAGGAGAAGGAAAAG CAAAACAACAAAGAGAAAAGAACATGACAAAAGAACAAAACCAGGTTGATAAACAAATCTTCAAATTTCGCCAATAGCCC AACATAACAACCCTGTGCAAAACAGTCTTCAATAATATTTCAGATTGTAGAAATAGGCAGCAGAAGTGATCCAATTAGGT CTGGTTGTGTTCAAGTTCTCGATTATCTAGGGATGGTTCCATCTCGATGAATATTAGAATTGGTTCATAATTTTGTGATC GTCTTATTTCAAAGTGTTTTGGATTCAATTCTACCTTCACAGTAGATGAGGGGTTTTTTCAAGGGAAGGGGTGGCCCATA TGGCTTTCCCTTCCCCAAAAATTGATGAATAGCAAAAAGAAAATCTGTCAGGCGGGGTTATTTATAATTTTCCTTTGTAG CCCTTGAGAATAGCCTTGGGTCTGAAATAATGAGCTCTGATATTTTTGATATACGAGTATGTAATAAGTTCTTACTTACA TCCATATTTATTGATCCTTCAGTATGCTGAATTATGCAGTTCAGTCGGAATTAGACTCCAATATCATTATGTGGCTGCCT TTATGATTACAAAATGTTCTCAGCTCATATGTTATGCATATTAACATCTTTGCATCTTCCTAATTTTTAGGTACGGAAAT TCAGAGTATGTGGATGAACGACATCGACATAGATATGAGGTTTGACTTTTAACCTTTTTTTGTGACTGGATGTTCAAGTG ACGTGTAGTATGCATCCAGTAATTTAGCACTGAATCGTGCAGGTAAATCCGGATGTTATTGGAACTTTAGAAGAAGGTGG GCTAAAATTTGTTGGGAAGGATGAAAGTGGAAAACGAATGGAGGTGAGTTTTCTGCTTGGCAGGGTTTTGGTGGGAAGCA ATACTACATAGAATCAAACTTGAAAGTCTGACAGTTTCAATTGGATGCAGTTGCATTTGTTGTCCTGCTTTTGTGTTTTT CTATTTTTCTGCTACACACAATTCACTTCTTTCATTACTTGTTTTATGAATTAGAATGCAATTATTTTCAGGATTTTAAG AAATTCTCTCTCTTGTGCAGATTTTAGAGCTTCCAAGTCATCCATTCTATGTAGGTGTGCAATTCCACCCAGAATTTAAG TCACGGCCAGGGAGACCATCTGCTTTGTTTTTAGGTACTTGTCACCCACAAATTAGCTTTTCATATTTCATTTCTTTAAA CATGATGAGAAATGAAGAGTATCATCAAATAAATGTTTAATACCATCTTCAATTCATGTTTTGTTCATGTTACCTATTTA TGATGCTGCACCTATAGGTCTCATATTGGCAGCAACAGGGAGGTTGGAAGCACATGTTAGTAGGCATCAGAATGGATGCT GA
CDS sequence (LotjaGi5g1v0247000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATACGTTCTGATCACCGGAGGAGTCGTCAGCGGCCTCGGCAAAGGCGTCACCGCCAGCAGCATCGGCGTCGTGCT CAAAGCTTGTGGCCTCCGCGTCACTTCCATCAAAATCGATCCGTACTTGAACATAGACGCAGGGACCATGTCTCCGTTTG AGCACGGAGAGGTTTTTGTTCTTGATGATGGAGGAGAGGTTGATTTGGATTTGGGAAATTATGAGCGTTTTCTGGATGTT ACTCTCACCAGGGATAACAACATCACCACTGGAAAAATCTACCAGTCTGTTCTTGAGAAGGAGCGTAAAGGGGATTACCT TGGGAAGACTGTTCAGGTGGTTCCGCACATCACTGATGCGATTAAAGATCGGATTGAGTCTGTTGCTGTGATCCCTGTGG GTGGAAATGAAGGGCCTGCTGATGTTTGCGTGATTGAGCTGGGAGGCACTGTGGTCAATAATTCGAGTCTTTCTACAGGT GATATTGAATCTATGCCTTTTATTGAGGCTCTGCGGCAATTGTCCTTTCAAGTGGGACCTGACAACTTCTGTCTCATCCA TGTTAGCCTGATACCAGTGTTGGGTGTAGTGGGAGAGCAAAAAACAAAGCCTACACAACACAGTGTCAGGGAACTGAGAG CATTGGGCTTGACGCCTCATCTTTTAGCCAGTCGCTCTGCTGAGCCTCTACTCCAAAGTACCAAGGAAAAACTGTCACAG TTTTGCCATGTTCCAGTTGATAATATTCTGAATATCCATGATGTACCAAACATTTGGCACATTCCCCTTTTACTTAGAAA CCAAAATGCTCACCATTCAATTCTACAGCAGCTTAACTTACTCAACCACGCCACACCTCCTGATTTACAACAATGGACAG AGATGGCGGAGTCCTATGATAATCTTACTGTATCTGTGAGGATTGCAATGGTGGGAAAATATGTTGGTCTAACTGATTCA TATTTATCTGTTGTAAAGGCCCTTCTGCATGCTTGCGTTGCTAGTTCATTGAAGCCATCCATTGACTGGATTGCTGCTTC TGACCTTGAAGATGACAGTGCGGAATCCACACCAGAAGCACATGCTGCAGCGTGGACGACTCTGAGGAGCGCAGCTTGTG TCTTGGTTCCTGGGGGATTTGGAGATCGTGGTGTGAGAGGTATGATGCTAGCTGCCAAATATGCTAGAGAGAACAATGTT CCTTACCTAGGGATTTGCTTGGGCATGCAAATTGCTGTAATTGAGTTTGCTAGATCAGTTTTGGGGTTGGAAAGAGCAAA CAGTGTAGAGTTTGATGCCCAAACACCAAATCCTGTTGTGATTTTCATGCCAGAGGGTTCACGAACGCATATGGGAAGTA CCATGAGGCTTGGATCTCGAAGAACACTCTTACAGACACCTGATTGTATCACTTCCAAGCTGTACGGAAATTCAGAGTAT GTGGATGAACGACATCGACATAGATATGAGGTAAATCCGGATGTTATTGGAACTTTAGAAGAAGGTGGGCTAAAATTTGT TGGGAAGGATGAAAGTGGAAAACGAATGGAGATTTTAGAGCTTCCAAGTCATCCATTCTATGTAGGTGTGCAATTCCACC CAGAATTTAAGTCACGGCCAGGGAGACCATCTGCTTTGTTTTTAGGTACTTGTCACCCACAAATTAGTCTCATATTGGCA GCAACAGGGAGGTTGGAAGCACATGTTAGTAGGCATCAGAATGGATGCTGA
Protein sequence (LotjaGi5g1v0247000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYVLITGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNIDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV TLTRDNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKDRIESVAVIPVGGNEGPADVCVIELGGTVVNNSSLSTG DIESMPFIEALRQLSFQVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLASRSAEPLLQSTKEKLSQ FCHVPVDNILNIHDVPNIWHIPLLLRNQNAHHSILQQLNLLNHATPPDLQQWTEMAESYDNLTVSVRIAMVGKYVGLTDS YLSVVKALLHACVASSLKPSIDWIAASDLEDDSAESTPEAHAAAWTTLRSAACVLVPGGFGDRGVRGMMLAAKYARENNV PYLGICLGMQIAVIEFARSVLGLERANSVEFDAQTPNPVVIFMPEGSRTHMGSTMRLGSRRTLLQTPDCITSKLYGNSEY VDERHRHRYEVNPDVIGTLEEGGLKFVGKDESGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGTCHPQISLILA ATGRLEAHVSRHQNGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 1 | 280 | 280 | 3.26E-116 | ||
| PANTHER | 1 | 575 | 575 | 0.0 | ||
| TIGRFAM | 1 | 549 | 549 | 4.7E-220 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| Gene3D | 1 | 301 | 301 | 2.3E-140 | – | |
| PANTHER | 1 | 575 | 575 | 0.0 | – | |
| CDD | 2 | 275 | 274 | 0.0 | – | |
| Pfam | 2 | 280 | 279 | 4.4E-119 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 576 | 556 | - | – | |
| Gene3D | 303 | 574 | 272 | 6.2E-108 | ||
| SUPERFAMILY | 305 | 549 | 245 | 1.39E-65 | ||
| CDD | 306 | 549 | 244 | 1.18811E-130 | ||
| ProSiteProfiles | 307 | 568 | 262 | 19.116 | ||
| Pfam | 317 | 549 | 233 | 3.2E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | CTP synthase activity | Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | CTP biosynthetic process | The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. |
Expression pattern of LotjaGi5g1v0247000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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