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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0273400 |
Transcript ID | LotjaGi5g1v0273400.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q55874|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr|G7I519|G7I519_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58690175..58695738) extracted from Lotus japonicus Gifu genome v1.2.
CTACTAATTGCTAATTGTGATATACGTTAGTTCTCTCTTAACTCTATTAAGGTAAAGGAATCTCAAAAAACAGGTCAAAA TCCTATGCAGACAAGCCATTGTCCAAGTCCATGGCCGCCAACAAAACCAACACCAACAACGTCAACAACAACAGCATCTA GATTCTAGAGTTCATACATCAACATCTGAACAATTAATACCACATTTTACCACCAACCAAACTTCCCTCCCTCCTTTTTC TTTCACAGAATCAACCAAGCATTCAAATACAACCAAGTAGTACTACTATGCTCTATCATGCTATTGCTATGCTCTATTAG TATTGATTGATTATTCTCTTCTCTTCTCTTCTCAACCACCATGGTTATTCATTATTCGTTCAATGAAATGAAAAATCCTT CTACCTCGGTTTCCGTGCACCATTTCTACTTTTCATAAAACCCCATTTCCTCTCTCTCTTGCTCTCTTATTCCAAGGACT CTCAGATAACCAAAGCTGCAATCTTTTCTTCATTTGAGATCTGGGTTTTGCTGGGTGGAGCTTGGTTTTTCAGGGTTCTG CTTAAAAATGGGAAGCAAATGGAAGAAAGCTAAGGTGGCTTTAGGTCTCAATCTTTGCATGTTTGTTCCCAGAACTCTAG ACGACGAATCGCCGCCGCCGTCCACGGTGGTTTCTGAGAGGTTGTCGGACGCTTCTCTGCTCTCTTCCCGGCAAACCACG CCGGTGCAGTCTTTCAACGGCTTGAAGCTGTCCAAAAGTAGCAGCAAATCTTCCAAGGTTTGTGTCTCTTTTGGATTGTC CACTTGTTGTTGTTTCTTACTGTTCTTTGTTTTTTGTTTTTAATGTTTTGATAAGCTTTGTTTTGCTTGGTTGCTTGGAA AAATTAATTGAGCAACAGATTTTACTTTGCTAAAAATGGGTTCAGGTTAAAATTTGTGACATTGAAGATATTTTTTGGAG TGTTTTGTGAAGAAGGGTTTAATTGTTTTGGCAGATTTTGTTACTACTTCAGGGCACTATTTAGGCCTCTGACATATCAT GTTTTCTTGATTTTCTTAACTCAACAAGAGTTTAATTGAGAACAAACTTGCATTTTGCTAATTAATGTGTGGTTGTGTTA TTTGAATTGAGGGAGTAATGTGAAATGAGTTTGAATGATTCAGGAGCTAAGTTACAAGTAGGGGTTGTTTTCAGGGACCA AAATGCCATTTTACTCTTCTAATTCCGTCCATTGATTTTATTTTTATGTCTCTTTCAATTGTATTGCAACATGGGTAATT GATAGATTGATATGTTTTGTTGACCATTCCAACACTGTATCCTTATTTAATTTTGAAGTTTTGTGAGATGAATTCTGATT TTGACCTGCCTTAAGCCGGCATGATTGTTTTTGACATGCTTCAATGCCGCATCTTGTGGATAAGATTTTCCTTTTTTTAT TTTTTTCTTCCTTTCTATGGGCTCTGCAGTGTTTATCTATTTATTTTTTTAAAAGCAATTATGATATGATGCATAGTTGG CTTGTTCATTGAGTCAAAGTCATATTAGCAGTTTTTGACGACTAAGGTCGAACTCATTTGTTGAAAATTTGATTTGTATG AGTGGAATATCTTTGGACTAGTGTAAACGATGCTTTAATCCCTTTGCCTGACTAGGCAACATGATTAGATGTTTTACCAT CCCTCACAATCTCAGTATGTGTAAAGCTTATTGTTAATAGGAGATCATATGATTGATAGTTAAGTCTTCTTTTTGCAATA TGACAGAATAAAAAAAATATAGTATGAGAATGAGGAAGCGTTTTCTTCTATCCGTCTAAGAATATTTAAGTATAAAAATA CTTAAGGTTGGCAGAGTGCTCTCATCCAGGTTCCTAGCCACTGTTAAATGCACAAATCGAGTAGAAATAGTGATATTCAA TTTGTGTATTTATTCACTGTGTCTATATGGAATCTGGTAATGAATTATTTATTTTCATGTAGTCAGAACAACTGTAAAAT TATTTACATTGAAGTATCAATGTTCTTACAAGCTTTTATTTTTCAACCATTCAGCAAACCTGCTCAATATGCTTAAACAA AATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCACTGCATTGCTTCAAATG TGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGCGCCAGTTTGGATCCT ATCCAGGGAAGGGTTTCACCTAGTCCTATAAATTGGCCCCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTT ACCCCATCCTCGCCGAGATTTGAATAGGAGGCATATTGTGCCACTTTATCAAGCTTCTGAACCAGGTGTATTCAATGACG ATGAACCCTTGAATCATCAACCTCAACCTGCATTACCTGAGAGAAGCACTTCAGGTAAGAGTACTGAAGATACTGATTCT GTTCGAGCAATGGAGATTAAAACGTACCCCGAAGTGTCAGCTACTCCACGGGCCAAAACTCACTCTAACTTCACAGTTTT GGTTCATCTCAAAGCTACTGCTGCTGCAGCTGCCGAGAGACAAAACCTTAGTAGAAACCAGGCTAGCTTGACACAGATTT CTCAGACACCGCGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGAGTGGAACTAAGCTTGCGCTA TTGAAAAGAGCCATGGGGTTTGTTATACAGAATCTAGGCTCTAACGACAGGCTCTCTGTTATTGCTTTCTCTTCCACGGC TCGCCGCCTCTTTCCACTATCTAGGATGACCGATTCTGGACGGCAACTGGCATTACAAGCTGTGAATTCCTTGGTTGCTA ATGGGGGTACCAATATTGCTGAAGGGCTGAGAAAAGGCACTAAGATAGTAGAAGACCGAAAAGAAAAGAATCCAGTTGCC AGTATCATACTGTTGTCTGATGGGCAGGATAATTACACTGTCAGTGGCTCCGGAACTGACCAACCTCAACCGAACTACCA TTTGCTTGTGCCTAATTCAATCAGTGGCCGTGATAATTCAGGATTTCAAATTCCGGTGCATGCTTTCGGATTTGGTGCTG ATCATGATGCTTCATCAATGCACTCAATTTCAGAGATCTCCGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTG CAGGATGCATTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTCCAGGAGCTACAAGTGGGAATTGAGTGTGTACA CCCAAGCCTCGGTCTTGTCTCACTTAAAGCAGGAAGTTACCCGAGCCGGTTGGTAGCTGATGGCCGCAAAGGGTTTATTG ATGTTGGAGACTTGTATGCTGATGAAGAGAGGGATTTTCTTGTTTCTGTTAATGTCCCTGCTACTTCAGGCAATGAAACA TCATTGATAAAGGTCACGTGTGCTTACAAGGATCCCTTGACTCAAGAAATAGCAGTGTTAGAAAGTGAAGAAGTGAAGAT TGAGAGGCCTGAAATAGCTGGACAGGTTGTGATGTCACTTGAAGTGGACAGACAGCGCAACCGGCTCCAAGCAGCTGAGG CAATGGCCCAGGCACGTGTTGCAGCTGAACAGGGAGACCTAACAGGAGCAGTGTCAATCCTTGAAAACTGTCGGAAGACG CTTTCTGAGACCGTATCGGCCAAATCTCATGACCGTCTTTGCATGGCGTTGGATGCTGAACTAAAGGAAATGCAGGAACG AATGGTGAGTAGGCATGTGTATGAAGCATCTGGAAGAGCATACATACTTTCCGGATTGAGCTCACACTCATGGCAACGAG CAACTGCAAGAGGCGATTCCACGGATCAGTCGAGCCTTGTTCAGGCTTATCAGACCCCATCAATGGTTGAGATGCTTACT CGATCTCAGGCCATGCTACTAGGTAGTCCATCAGGTCAGAGGTTTCTCCAGCCACTGTTGTCATTGAGATCACAACCAAG CCCAAGGTAGTCCAACAGGGATTTTGTGAAAATCATCTTCAAATTAACAATTGCAAGTGATTTTCTCTTTTTGGCTAAAG GGGAGGGGGGGTGTTGAACAGGAGATAAATGGAGATTTCATTGAGCTGTGATTTTGTTGTCTAATATATTATGTATAAAT GAAATAAGAGTTGAGGAAAGGGTGGAGGGTTTACTTACAACCAATGGAGAAAAGGGCAGTAGATAGGATGTTACTACATT ATGTTTCTTCTGTTTTTGCGGGGTTGAAGGTTTTCTTTTGTTTCCTCTGATGATGTTTTTGGGGGGTGGTGTACATACAG AAGAAATGCCTTTTCTTATTAAATTCGGGGGACATCTGGGTATAAAGTTTGTAACTGTGAAAATGGTTGGGATGATCTGA TCAATCAATATAAATATGGGTTTTCAATTCTTTCAGAAGTTGTTTACGAGTAATTTGCCTTTTTTGCATGGTTCCATCAC TATAGGCATGAAAAAAACCATCTGAATAAAGGAGAACGGTTGTGCCATATTTTTACTGCATTTTACAGCAATTCCACGGC TACATCGCAGCCATTTCAAAGCTAATTCACAGCTAAGAAGCCAATTCCATTGGTAATTCTGCAACTAAATATCAAGATAC TTAAATAACAGTAACCAACATAGTCCAGATACCTCATGCAAACTCAGTGTCCTATTACATCTCAATTTACCAACAAAAAT GCTACATTGACTAATGAAAAATACATAAACAACTCTATTGGATCTCGGGTTAAAACTTTCATTTGTTAAGAACCTAACAA ACAACTCATTAGTGAAAAAGATGAGCCAAAGAAGAGATTACAACTTAAAGAAACACTTAAAACCAAATACATCCCAGTTA TTATTCATGAAAGATTCAACAACATACCATGTAAGGATAACTCTCTCGAGGCAGTTCAAAATTTCAGCCACTGCATCATC CTTGGTGTCATTAGCAAAATAGCAACCAAATTATTGAATGCAGGAAGCGCCCTCTGTTGTTCACAGCCACTTCTGTTATC CTCGGCCAAAACGGTTTATGTGTCCATCTTTGCATCATAAAAAATCACAAGGACAATCAGAAAAATCTTTGAACACCAAA ATCACACTGAGGTAGAATAGAGAGTGACAATCCTACACAGATGCACAACCCTCACAAGTCACAATCTAACCTGCGATTCA CAACGGAGAACTCAAATTCCAAGAGATGGAGGACAAAATCGCAGAACCGATGATATGAGTGAGAATAATAAGTACCTTAG GCTTGAAAGCGCAGAACGAAGAAGAATGACCAAAACAAATGAAACCAGTAGATGATGAATGCGCAGAACAGAACTAAGCA ATATCATATCTCATTAATTTATACAGGCAATATCACTCAGGTACCTGGGATGTGTAGAATGATATCCTGGAAAAGCACAG ACTTTTTAGCACTTAGTATGCTCCTAATTTTATGGTATGACTTAACTGCAGGGAAGAGCACAAACTTTTATTGCTGGTGC ACAATCTTAATCTGATTTGCTAGTTGCTATCACCTATAACTATA
CDS sequence (LotjaGi5g1v0273400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCAAATGGAAGAAAGCTAAGGTGGCTTTAGGTCTCAATCTTTGCATGTTTGTTCCCAGAACTCTAGACGACGA ATCGCCGCCGCCGTCCACGGTGGTTTCTGAGAGGTTGTCGGACGCTTCTCTGCTCTCTTCCCGGCAAACCACGCCGGTGC AGTCTTTCAACGGCTTGAAGCTGTCCAAAAGTAGCAGCAAATCTTCCAAGCAAACCTGCTCAATATGCTTAAACAAAATG AAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCACTGCATTGCTTCAAATGTGAA ACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGCGCCAGTTTGGATCCTATCC AGGGAAGGGTTTCACCTAGTCCTATAAATTGGCCCCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTTACCC CATCCTCGCCGAGATTTGAATAGGAGGCATATTGTGCCACTTTATCAAGCTTCTGAACCAGGTGTATTCAATGACGATGA ACCCTTGAATCATCAACCTCAACCTGCATTACCTGAGAGAAGCACTTCAGGTAAGAGTACTGAAGATACTGATTCTGTTC GAGCAATGGAGATTAAAACGTACCCCGAAGTGTCAGCTACTCCACGGGCCAAAACTCACTCTAACTTCACAGTTTTGGTT CATCTCAAAGCTACTGCTGCTGCAGCTGCCGAGAGACAAAACCTTAGTAGAAACCAGGCTAGCTTGACACAGATTTCTCA GACACCGCGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGAGTGGAACTAAGCTTGCGCTATTGA AAAGAGCCATGGGGTTTGTTATACAGAATCTAGGCTCTAACGACAGGCTCTCTGTTATTGCTTTCTCTTCCACGGCTCGC CGCCTCTTTCCACTATCTAGGATGACCGATTCTGGACGGCAACTGGCATTACAAGCTGTGAATTCCTTGGTTGCTAATGG GGGTACCAATATTGCTGAAGGGCTGAGAAAAGGCACTAAGATAGTAGAAGACCGAAAAGAAAAGAATCCAGTTGCCAGTA TCATACTGTTGTCTGATGGGCAGGATAATTACACTGTCAGTGGCTCCGGAACTGACCAACCTCAACCGAACTACCATTTG CTTGTGCCTAATTCAATCAGTGGCCGTGATAATTCAGGATTTCAAATTCCGGTGCATGCTTTCGGATTTGGTGCTGATCA TGATGCTTCATCAATGCACTCAATTTCAGAGATCTCCGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTGCAGG ATGCATTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTCCAGGAGCTACAAGTGGGAATTGAGTGTGTACACCCA AGCCTCGGTCTTGTCTCACTTAAAGCAGGAAGTTACCCGAGCCGGTTGGTAGCTGATGGCCGCAAAGGGTTTATTGATGT TGGAGACTTGTATGCTGATGAAGAGAGGGATTTTCTTGTTTCTGTTAATGTCCCTGCTACTTCAGGCAATGAAACATCAT TGATAAAGGTCACGTGTGCTTACAAGGATCCCTTGACTCAAGAAATAGCAGTGTTAGAAAGTGAAGAAGTGAAGATTGAG AGGCCTGAAATAGCTGGACAGGTTGTGATGTCACTTGAAGTGGACAGACAGCGCAACCGGCTCCAAGCAGCTGAGGCAAT GGCCCAGGCACGTGTTGCAGCTGAACAGGGAGACCTAACAGGAGCAGTGTCAATCCTTGAAAACTGTCGGAAGACGCTTT CTGAGACCGTATCGGCCAAATCTCATGACCGTCTTTGCATGGCGTTGGATGCTGAACTAAAGGAAATGCAGGAACGAATG GTGAGTAGGCATGTGTATGAAGCATCTGGAAGAGCATACATACTTTCCGGATTGAGCTCACACTCATGGCAACGAGCAAC TGCAAGAGGCGATTCCACGGATCAGTCGAGCCTTGTTCAGGCTTATCAGACCCCATCAATGGTTGAGATGCTTACTCGAT CTCAGGCCATGCTACTAGGTAGTCCATCAGGTCAGAGGTTTCTCCAGCCACTGTTGTCATTGAGATCACAACCAAGCCCA AGGTAG
Protein sequence (LotjaGi5g1v0273400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLSSRQTTPVQSFNGLKLSKSSSKSSKQTCSICLNKM KQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGASLDPIQGRVSPSPINWPQNDALMAVVHRLPLP HPRRDLNRRHIVPLYQASEPGVFNDDEPLNHQPQPALPERSTSGKSTEDTDSVRAMEIKTYPEVSATPRAKTHSNFTVLV HLKATAAAAAERQNLSRNQASLTQISQTPRAPVDLVTVLDVSGSMSGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTAR RLFPLSRMTDSGRQLALQAVNSLVANGGTNIAEGLRKGTKIVEDRKEKNPVASIILLSDGQDNYTVSGSGTDQPQPNYHL LVPNSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECVHP SLGLVSLKAGSYPSRLVADGRKGFIDVGDLYADEERDFLVSVNVPATSGNETSLIKVTCAYKDPLTQEIAVLESEEVKIE RPEIAGQVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLTGAVSILENCRKTLSETVSAKSHDRLCMALDAELKEMQERM VSRHVYEASGRAYILSGLSSHSWQRATARGDSTDQSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRFLQPLLSLRSQPSP R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 9 | 9 | - | – | |
Phobius | 1 | 25 | 25 | - | – | |
SignalP_EUK | 1 | 25 | 25 | - | – | |
Phobius | 10 | 20 | 11 | - | – | |
Phobius | 21 | 25 | 5 | - | – | |
Phobius | 26 | 721 | 696 | - | – | |
PANTHER | 33 | 707 | 675 | 0.0 | – | |
PANTHER | 33 | 707 | 675 | 0.0 | – | |
Gene3D | 48 | 124 | 77 | 5.7E-14 | ||
SUPERFAMILY | 69 | 123 | 55 | 5.55E-15 | – | |
Pfam | 72 | 117 | 46 | 4.1E-9 | ||
ProSiteProfiles | 73 | 117 | 45 | 12.091 | ||
SMART | 73 | 116 | 44 | 1.2E-6 | ||
CDD | 73 | 117 | 45 | 4.60093E-12 | – | |
MobiDBLite | 181 | 213 | 33 | - | – | |
SUPERFAMILY | 269 | 460 | 192 | 7.51E-33 | ||
SMART | 272 | 459 | 188 | 3.3E-28 | ||
CDD | 273 | 447 | 175 | 2.79448E-56 | – | |
Pfam | 274 | 457 | 184 | 1.5E-25 | ||
Gene3D | 274 | 461 | 188 | 2.4E-44 | ||
ProSiteProfiles | 274 | 460 | 187 | 16.505 | ||
Coils | 619 | 639 | 21 | - | – | |
Pfam | 623 | 695 | 73 | 8.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0273400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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