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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0307200 |
| Transcript ID | LotjaGi5g1v0307200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62498444..62501382) extracted from Lotus japonicus Gifu genome v1.2.
ATACGATTTATCCTTTAAAACGCAATACTTCCCTTATTTGGAACATACACGAGTTACTGAGTTGTTTCTAAAATGCGGTG TTTCACCACTATCAGTGGGAGGATAATACTTACACGGACTCTCTGCTAAGCATGGCGCGCATCAAGATGAGCCTCCTCCT GCCATTTTGCACCCCTTGGAGGGTACGAGACTCTTCCTCGTGACTGTTTCTATGAGTATCTCTTTCGTGAGGCCTAAGTC ATGAGATCTCTCTCATTTCATTTTTCTTCATGAAATATAACAAACAAAAAAAAGTAAGTAGAATCATTCTTCCAATGGGG CCTTTGTATGATTCTCATGGACCCTGGTGGGTTATCCTCTCTAGCAGGCCCATTTCCTCTACCAGAGTTTGACACAAAAA CTCACACCACAGGGTTAGGGTTCATCCGTTTCAACCCACATTCTCAGAACTCAGAAGCACCGTTTCTCCGATCAACATGG TGAAAACGAAGCCAGGCAAGTACGACGTGGACTCCTACACCATCAAAGACACCAACACGGTCGTCAGAGCCGGCGACTGC GTTCTGATACGGCTGCCCTCCGACACCTCGTCGTCGAGGCTTCTCCACTCCCTAGCCCGCGTGGAGAACATCGTGCAAGA CAGCATGAACAGCGTCGGCGTACGCGTGCGGCGGTATTACCGACCCGAAGAGTCGATTGGGGGTCGCCGGAAGTTCCATG GCATCAAAGAGCTCTTCCTCTCTGACCAGTTCGATGTTCAGTGTGCTGACGCCATTGTAGGCAAGGTTGTTGTGCACTCT TTGAAGAACTATTCTAAGCTTGAGAATGTGGGTGCTGAGGATTACTTCTGTAGATTTGAATACAAGGCTACTACTGGGGT TTTTTCTCCTGATCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCTGATGAACTCATGGTGCAATGTGAAG GGTGCAAGGATTGGTTTCATCCTGAATGTTTGGAAATGGCTGTGGAAGAAGCAAGGAGATTGGAACCTTTTATGTGTTCT GAATGTGGGTTGGAGAAAGGTGGAGCCTAAGCGGCGGTGGAAGAGAAGAGATGACCCTAATGCAGAATTTAGTCATGCCA AATCCAACTGGTCTATGGTAATTTCTGTGTGTGTGTGTTGTGCAGATTCTTATACAGGCTATAAACATGTTAATATTTGA CTCAGATTATGTATTTATCGGTGTTCGATTATATGACAGACATTGTTCTGTTTTCATGAAAAAATATTGTTGGATGCTGT GGTGTTGGTAGTTGAGAATGCTTGAATTGATTGGATTATGCCTCCCTTTTCACATGTGCTTTTTGATGAATGGAATCATA TTCATAATTCATGTGATTCTATAATTTGGAAGTGTATTCCTTGTGTCATTCTCAGTGTTGTTAATTGTGGATGGCGGGTT ATGGCGGGATTTCGGACATCACAAATAATGGCGGGATATGGCGGTGGTCATATGGTGGGATATCGGTCATGGCGGAAAGC CAAAAAACCGCCATTAGAAACTGCCATGGCGGCGCCATTGCGGATATTTGATAAGCTGAAATCCCGCCATACATGACAAA TAATGGCGGGATATCGGTCATGGCGGAAAGCCAAAAAACAGCCATGAAAAATTGTTGTTGGCTGCTGTGGTGTTGGTAGT TGAGAATGCCTGAATTGATTGGATTATGCCTCCCTTTTCATATGTGCTTTTTGATGAATGGAATCATATCCACAATTCAT GTGATTCTACAATTTGGAAGTGTATTCTTTGTGTCATTATCAGTGTTGTTAATTGCAGATGTCTGGTCATGGCGGAAAGT CGGAATCCCGCCACACATGAAAAATAATGGCGGGATATCGGCCATGGCGGAAGGCCAAAAAACCGCCATGAGAAACTGCC CTGGCGGCGCCATTGCGGATATTTGATAACACTGGCCATTCTTTGGTCTGTTTGGATTGGTAGAATTAATGGTAAAGTTT TTTTAGTGGAAGCTGTTTGATTTTACCCAACTTTTACATTTGACATAGCCATCCAAAAATTCTGGGGTTTGGTTTAGCTT TCTTAGTGTCCAAAACATGATGTGATTTACTCTGCTCCCTTGTTCCACAAGTGTGATGAAGATAGCATGTCAATGCCAAT CTCTATGCTAAATTATGATGCTGCCGCAGGGGAATGACAGAGGAAAACAGAAGGTTCTGTTTTGTGAAATTAAGTTTTGC ACTTAAGTGTTTGTGTTGGTGATGGAGTGGAAACAAGAGAGAGAATGACAATGAGAGAAATAAAGAGAAGTAGAAGGCAG TGGCATGTGCAAGAAGTGAGGGGGTGGGATTGAATTTGCAGTCGCCAATAGTGGCATGGGGTATGAGTCAAATGAATGAG CTAGCTGTATTAGATTTTGAGGTATAGGATATGTGCTTTTGAAGCTGAGGTGCAAGGTATATTATATGCTCTTAATTTTG TTGTGGGTTGGGTGAATAGTGGTTCAAATAGACCATTTTATCTCTGAAGGTGAATATTTTGAAAAGGCAAGCCTCAGCGC AATAGTTGCTTCCTTGTGATTTTGTTGTCACAGATTCGAGCTATGGAATAACCGAATAAGCCTCTTGCAAAAATGTAAGG TAAAACTGGCTACATTAGATCCATAAAATGAGTCTGGCCCCTCCTTGAACCCCGAGCATAGCGGGAATTTTATAGTTTAT AGCACTAGGTTTGTCCCTCTTTTTGATGCCTTAGTGGAGTGATCAACTGATTGACTGCGTTTCTGTTGTCTATGTGTTTA GCAGTTTAGGCAACAAAATCAATTTGCTGATATGTTAGCAAAACTAGAAAGTTCGATTTATGATCTTTATGCTAAACTCA TGTATTGACCCATTTGATAGGGTTGTTCTCAGGAGTCAGGAATTTTTTATTTATATCAA
CDS sequence (LotjaGi5g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAAACGAAGCCAGGCAAGTACGACGTGGACTCCTACACCATCAAAGACACCAACACGGTCGTCAGAGCCGGCGA CTGCGTTCTGATACGGCTGCCCTCCGACACCTCGTCGTCGAGGCTTCTCCACTCCCTAGCCCGCGTGGAGAACATCGTGC AAGACAGCATGAACAGCGTCGGCGTACGCGTGCGGCGGTATTACCGACCCGAAGAGTCGATTGGGGGTCGCCGGAAGTTC CATGGCATCAAAGAGCTCTTCCTCTCTGACCAGTTCGATGTTCAGTGTGCTGACGCCATTGTAGGCAAGGTTGTTGTGCA CTCTTTGAAGAACTATTCTAAGCTTGAGAATGTGGGTGCTGAGGATTACTTCTGTAGATTTGAATACAAGGCTACTACTG GGGTTTTTTCTCCTGATCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCTGATGAACTCATGGTGCAATGT GAAGGGTGCAAGGATTGGTTTCATCCTGAATGTTTGGAAATGGCTGTGGAAGAAGCAAGGAGATTGGAACCTTTTATGTG TTCTGAATGTGGGTTGGAGAAAGGTGGAGCCTAA
Protein sequence (LotjaGi5g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKTKPGKYDVDSYTIKDTNTVVRAGDCVLIRLPSDTSSSRLLHSLARVENIVQDSMNSVGVRVRRYYRPEESIGGRRKF HGIKELFLSDQFDVQCADAIVGKVVVHSLKNYSKLENVGAEDYFCRFEYKATTGVFSPDRVAVYCKCEMPYNPDELMVQC EGCKDWFHPECLEMAVEEARRLEPFMCSECGLEKGGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 195 | 195 | 1.8E-95 | – | |
| Gene3D | 1 | 131 | 131 | 1.3E-17 | ||
| PANTHER | 1 | 195 | 195 | 1.8E-95 | – | |
| ProSiteProfiles | 21 | 140 | 120 | 17.071 | ||
| SMART | 21 | 140 | 120 | 6.3E-26 | ||
| Pfam | 23 | 139 | 117 | 4.8E-13 | ||
| Gene3D | 132 | 196 | 65 | 8.5E-19 | ||
| SUPERFAMILY | 137 | 191 | 55 | 6.2E-17 | ||
| ProSiteProfiles | 142 | 193 | 52 | 8.956 | ||
| SMART | 144 | 191 | 48 | 8.8E-8 | ||
| Pfam | 144 | 190 | 47 | 6.1E-10 | ||
| ProSitePatterns | 145 | 190 | 46 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi5g1v0307200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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