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LotjaGi6g1v0187700.2

Overview

Field Value
Gene ID LotjaGi6g1v0187700
Transcript ID LotjaGi6g1v0187700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TAIR: AT2G26930.1 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase; Swiss-Prot: sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic; TrEMBL-Plants: tr|I3T103|I3T103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0187700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48176495..48180764) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTCCTCTCACTTTCTCTGCAGTAACCATGTCTTCCCCACTTCTCAAAACCCCTTCAGAAGCAGCCAGTTACCTCA ATTCAGACCAAATGGCTCATCCAATTTTCATTTCAAGCTTAGACCCCATTTGGTCAAAGCCATGGTTTCTGATTCCAACA CTTCCAGGAAACAACTAGAGGTTACATCTTCCCCTGAACTCTTCAGTGTGGTTGTTTTTGTTGAACAACATTTGTTTAAG GATAGAGTTTGAATAAAATAAATAAATTTGTTTGTTGTGCTTTGAATTGAGTTTTGTTGATTTTGTTAACATGTGGTGAT TGTGTGTTGGTGAAATTAGGTTGTGTATGACCATGATGAAAGGATAAACAAGTTGGCTGATGAAGTGGACAAGAATGCTC CCCTTTCAAGGCTTACCCTGTTCTCTCCTTGCAAGGTACTAACCACCAACTATTGTTTTGCTTAGAGGCTATCCAAATTT TCTTGCTTGAATTGAAATTGCCAACCCCTCTCTGCAGATAAATGTTTTTTTGAGAATGACCAACAAAAGGGAAGATGGGT ACCATGATTTGGCATCCCTATTTCATGTAAGTTGTTATAATCATGAATTGGTTAATGCTTGAGTGCTCTTTTTTTCATGT ACTTGATATGATGAGCACATTTTACTTGTCCCTTTTGAGTCTTTAGGTGATAAGTCTAGGTGACACCATTAAGTTCTCTT TGTCGCCTTCAAAAACCACCGATCGCCTGTCAACCAATGTGTCTGGGGTGCCCCTTGATGACAGAAATTTGGTAAGGCAA CACAAACTTTACTATTTTCTTTCTCCGCCTTATGCCATTTATTCAGAGAATGTTAAATGGGGATTCTCTTTCTACAGATT ATTAGGGCTCTTAATCTTTACAGGAAGAAGACTGGCAGTGACAATTTCTTTTGGGTATGCAATAGCATTGTTATTTGATT CCTACTTTATTATTTTGAATAAAAAATTGGGTTATTCTTTGTATTACTTGCAATTATACTCTGCACTAGATTTAATTTAT ATTCTTTATATTCATGTTGTTGTCAGATTCATCTTGATAAAAAGGTCCCCACTGGGGCTGGGCTTGGTGGAGGAAGTAGC AACGCTGCAACTGCACTATGGGCAGCAAATCAATTCAGTGGTTGTCCTTCCACAGAGAAAGAGCTCCAAGAATGGTCAGG TGAAATTGGATCTGATGTTCCCTTCTTTTTCTCTCAGGGAGCAGCCTATTGCACTGGTCGAGGTGAGGTTAGTCCAAATA TTAGGTACCTTCCTTTCTCGAGATCAGATTTGACAAAAAAACAGCTAAATGTTGATTTCTTATTAATTGTTATATCTTAC TTTGTTGGTTCTCAATGTGTGCTGCCAATTGACAATGTCTGATAATTCTGACTAGTTGCTACAATAGATAGGGCTGTGAA TAGAGTTGTGCCACCATGAACTTTAATTAATTTCTGAATAAATTTGAGCATGTGATTACTTTGTAATTTGAGCAAGTGAA CCCAACCTTCACAATTGTCAGTTCACATCACCTAGATTGATCTTTCTCCCGGAAACTTTAATAATTTAGTCCTAGAAGGC ATCAGACCATTTTGTCATGGATGGGAAGTGATTGTTCTGTTCCTTAAATACTGATTTGTGAAGGGTTTCAACTATTATAT TTGAGAGTACTCCAAAAGCTCATACACATATGTAACCCTTTTAGCCTTTTGCAGGCAGCTAGCTTTATTAAATGTGATTT TCTAATCATTATATTTTATTCAAGTGTTTTTATTTCACTTGTACAGATTGTTGAGGATATTCCCCCACCAGTATCTTTGG ACATTCCAATGGTTCTGATAAAACCTCCACAGGCATGTTCAACTGCAGAAGTTTACAAGGTATTTGATCAGAAAAGTAAC GAAACTGTACTTCTCCCTCATTTTTTATAGTCGCAAACTTTACATGTTCCAATTGTACAGCGTCTGCGGTTGGACCAGAC TAGTAATGTTGATCCTTCAACATTGCTGGAGAAGATCTCAAGGAATGGTATATCACAAGATGTTTGTATTAATGATTTAG GTATGTTTCTAGCTGTTAACTTTTTCATTGTAGCTTTGATTTGATTTTGAATGCGCATTATACATTATTCGATGAGATTT TCCGTGTTAAGGTAACCTAGCGGATTAACATTCTAAATATAATTGGATGCACAACATACCATGAAGTATGCCCATTATTA TCTTGCAAATGAATCATTCATATAATTGATATTGTTATTTTTTTCCAAATTCACTAGTCCAAGCACCAAAGTATTAATTG AAGTTGGTATCGTTATGTGATGTGATATAATGCATGTACTTTTTCATTTGATTTTTAATTTTTGTTTCATGTCTCCCCTT CTTTTTCATCCGCAGAACCTCCGGCATTTGAAGTTCTCCCTTCTCTTAAACGACTAAAGCAGCGAATTACTGCAGCTGGC CGTGGAAAATATGATGCTGTCTTTATGTCAGGAAGGTGAAAACACTTGAAAATCTAAGGCCCAGTGTTCTGTTGTTATTT TTATTTTCATTTTTAATTACAAGAATGTCATCTTGTTTTCACTTTATTTCTTATTTTCAAAGTGGTTTCCAATACTTGAC CGTGCAAACTTATTTTTACACATTACATCCTTATGCATGCAACACATTATTACAGTTAAGTAGGTCATGCAGGAAGTGTA AGCCAGTAGATTATGGATTTGATAAAACAGCTCAAGGGAACTGTCAAGTATCAAGTGATATCAGTATTTTGACATAAATT GCAATTTTCAATTTCTATCTCTAATGACAAATCACATTCCATGATTAATTCTTCTGTCTGTCTCGAATAGATCATATTAA CACACCCACCTACTTGAACTTATTCATGAACAGTCATTCAAGAATCTCAGTTCAGGTTCTGGCGGGGAAGATGGGCCCAA AAAGTTCATGTGATGACTTCAAAGTGATTAATACTTGTTAGAGTTGGCCAAAAATCTGACCTAAGTTTGCAGCTTGATAT TTGGATTTAGGTGTTCCGTGTTTGGCTTCTAGTTGGTTTAAAGTAAATTCTGAGGGGCTTGGGAAGCTTTGCTCCATTCA TATTTTCTGTCTTCTTTGTTATTTTTGTTATCCTTTTTCATGAAGGAGGATCCTTTATCCTCCAAAATCCATGTAAATTT CTACTCTGTCATACTGAATTTCTTTCTTTTATTAAAAAAAGTTATGCATATCAGCCAAAGTTAATCAAGCACGCATGCTA GAGCCAGAAACAAATAGAAATACATGATATGATAGTCAAGGTTTTAATTTAAATCAGAACATCTAAAATTCTGTAAAGTT CAGGAGCTTTGACATCTCTCTCTGAGTTGTGGCGAAGTAGAATTGTACCCTTTTTTCCATGAAAATCTTCAGAAATGGAT TTTCCAGAAAGAAACATGTGGTGGATGGAACTATTGACTTGTTTTTCCTATTATTTTCCGTTTCTAAAGGATATTAATTC TGCTGAAATTAAATGACATGCTTTTCCTGTTCGTTTCTGATAGTATTGGCAGTCCAGTTTATTTTGCTCCTGTGCTTGCT TTCATGTAGAGCCCTGATTTTAAAAGATGCAATCCCTCATATTTTGTCTTAATGCATCTCATGCAGTGGAAGCACTATTG TTGGAATTGGTTCACCTGATCCTCCACAATTTGTTTACGATGACGATGAATATCAAGATGTGTTCTTGTCAGGTAAGCGC TGCAATAAATTAGGCTCTGAAACTAGGTTAATCTCTGATATATTTAAGCCGTAATCACATAGACATACATAAATATCCAC TTATCTAGCAGCTAGAATGGTACAATCGTGTTTTAAATGCTCAAGCTTGCAATTTAGTAAAAAAGTAGGTAATGAATTTA GTTTATAACATCTGCAGGTTGTACTTGTATAGCATAACATTATGCAGAGGTTCCACTTTACGGAATTAAAAATTCTGCCA AATGTAGGCTGTTGGAGAGCCAAAATCTCACTGCAAAATTTAGTGAATACTTCTTCATTATTAGGAGGATGTTTTAGGAT TATATAGCAAAACTTCTGAACTTTTATTCTTCTCAATTACAGATGCCTATTTTCTCACTCGAGAGCCAAATCAGTGGTAC AGAGAACCTGCTTCAAGTCCTGCCGCCTCTCCTTTTGTTTCTGAGACTGTTTAGTTTATCATCTTGTTAGATTTTTTTTT TGGGTACAATCATCTTGTTAGATAATATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0187700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCTCTCACTTTCTCTGCAGTAACCATGTCTTCCCCACTTCTCAAAACCCCTTCAGAAGCAGCCAGTTACCTCA ATTCAGACCAAATGGCTCATCCAATTTTCATTTCAAGCTTAGACCCCATTTGGTCAAAGCCATGGTTTCTGATTCCAACA CTTCCAGGAAACAACTAGAGGTTGTGTATGACCATGATGAAAGGATAAACAAGTTGGCTGATGAAGTGGACAAGAATGCT CCCCTTTCAAGGCTTACCCTGTTCTCTCCTTGCAAGATAAATGTTTTTTTGAGAATGACCAACAAAAGGGAAGATGGGTA CCATGATTTGGCATCCCTATTTCATGTGATAAGTCTAGGTGACACCATTAAGTTCTCTTTGTCGCCTTCAAAAACCACCG ATCGCCTGTCAACCAATGTGTCTGGGGTGCCCCTTGATGACAGAAATTTGATTATTAGGGCTCTTAATCTTTACAGGAAG AAGACTGGCAGTGACAATTTCTTTTGGATTCATCTTGATAAAAAGGTCCCCACTGGGGCTGGGCTTGGTGGAGGAAGTAG CAACGCTGCAACTGCACTATGGGCAGCAAATCAATTCAGTGGTTGTCCTTCCACAGAGAAAGAGCTCCAAGAATGGTCAG GTGAAATTGGATCTGATGTTCCCTTCTTTTTCTCTCAGGGAGCAGCCTATTGCACTGGTCGAGGTGAGATTGTTGAGGAT ATTCCCCCACCAGTATCTTTGGACATTCCAATGGTTCTGATAAAACCTCCACAGGCATGTTCAACTGCAGAAGTTTACAA GCGTCTGCGGTTGGACCAGACTAGTAATGTTGATCCTTCAACATTGCTGGAGAAGATCTCAAGGAATGGTATATCACAAG ATGTTTGTATTAATGATTTAGAACCTCCGGCATTTGAAGTTCTCCCTTCTCTTAAACGACTAAAGCAGCGAATTACTGCA GCTGGCCGTGGAAAATATGATGCTGTCTTTATGTCAGGAAGTGGAAGCACTATTGTTGGAATTGGTTCACCTGATCCTCC ACAATTTGTTTACGATGACGATGAATATCAAGATGTGTTCTTGTCAGATGCCTATTTTCTCACTCGAGAGCCAAATCAGT GGTACAGAGAACCTGCTTCAAGTCCTGCCGCCTCTCCTTTTGTTTCTGAGACTATAATATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0187700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSHFLCSNHVFPTSQNPFRSSQLPQFRPNGSSNFHFKLRPHLVKAMVSDSNTSRKQLEVVYDHDERINKLADEVDKNA PLSRLTLFSPCKINVFLRMTNKREDGYHDLASLFHVISLGDTIKFSLSPSKTTDRLSTNVSGVPLDDRNLIIRALNLYRK KTGSDNFFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGCPSTEKELQEWSGEIGSDVPFFFSQGAAYCTGRGEIVED IPPPVSLDIPMVLIKPPQACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRITA AGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREPASSPAASPFVSETII
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.230.10
69 241 173 1.6E-53
IPR014721
PANTHER
PTHR43527
80 383 304 1.3E-138 –
TIGRFAM
TIGR00154
85 339 255 1.7E-56
IPR004424
Hamap
MF_00061
85 381 297 27.365
IPR004424
SUPERFAMILY
SSF54211
85 239 155 1.9E-38
IPR020568
Pfam
PF00288
170 224 55 1.3E-6
IPR006204
Gene3D
G3DSA:3.30.70.890
248 346 99 1.5E-18
IPR036554
SUPERFAMILY
SSF55060
248 351 104 1.39E-17
IPR036554
Pfam
PF08544
295 351 57 7.6E-5
IPR013750

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016114
Biological process Terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Subterm of
GO:0050515
Molecular function 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity Catalysis of the reaction: 4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + 2 H(+).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0187700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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