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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0283400 |
| Transcript ID | LotjaGi6g1v0283400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; TrEMBL-Plants: tr|I1L028|I1L028_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0283400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59997044..59999347) extracted from Lotus japonicus Gifu genome v1.2.
GGTAAGGAAAATGGTTTCTCGTCTCTGTTCTTCCTACTCTTCACTCACCTCTTTCTCTTCTTCTTCTTCTCCTTCTTCTT CTTCTTCTTCGCGCAATTTCAAATTCAAAACCGTTCTTCCCCTTAACCATGCATCGTTGCAGAACGCAAATTCTCACGAC CACCCAGTTGCAAGTTCTTCATCTTCAAGGGAAAACCAACCATGGGTCAATCCCAATAGCCCCAGAGCTCAACTTTTCCT CAAGAGGTTCCCTCATGAAAAGTACACTCTCCTCCTCAAACTCACCGACTCTCTCAACTCGTGCGATCCCGCTGACCCAC AAGTCTCTGCAATTCTGAACGATTTAGGGGACAATGTCTCAGAACGAGAAGCTGTGTTCATTCTTGATAGGATGGAGAAT TCTGAAACCGCACCCGTTGTTCTACGTTACTTGCGGGACAAGATTAAACCCACCAGAGGCAAAGAGTTGGTTCTTTACAA TGTGGCCATGAAGGTTTTCAAGAAGTGTAAGGATTTTGAAGGTGCGGAGAAGCTGTTTGATGAAATGCTTCAGAGAAAGT TGAAGCCGGATAACGTTACTTTCGCGACTATGATTAACTGTGCTAGGTTGTGTTCTATGTCTGACAGGGCTGTGGAGTGG TTTGAGAAGATGCCGGGTTTCGGGTGTGAGCCGGATGCTGTCACGTGTGCGACCGTGATATTTGCTTATGCGCGTGTTGA GAATGTTGATATGGCTGAGCGCCTTTATGATCGTGCGAAGACGGAGAATTGGAGGCTTGACACGGTGACGTTCTCAGCAT TGATTAAGATGTATGGCATGTTGGAAGACTACGATCAATGCTTAAATGTTTACGATGATATGAAGGTTCTTGGTGTGAAA CCGAACCTGGGAACGTATAATACTTTGTTGCCTGCCGTGTATAGAGCCAGGAAGCCCCTGCTGGCAAAGCTTATATATGA AGAGATGAAAAGAAATGGTATCTCGCCGGATTATATAACCTATTCAACTCTATTGCGAGCCTATATTGGAGGGTATTTGA GGGAAGACGCTCTTGGTATTTATAGGGAAATGAAGGAGAACAGGATTGGTGTTACTGTAGATCTTTGTAACTTGCTTTTA TCTATGTGTGCTGATGTTGGCTTCCTTGATGAAGCTGTTGAAATTTTTGAAGACATAAAAAGTTCTGGGATTTACCAGCC TGATGAGTCGACATTTTCAAGCTTGATTACTGTATATTCCTGCTTTGCGAAAGTTTCGGAGGCAGAAGCGATGTTAAATG AAATGATTGAATCTGGATTTAAGCCTAATATCTTTGTTATAACCCCGCTTGTCAAATGCTATGGAAAAGTAAAGCAAATT GATGATGTTGTGAAGATAGTTAAGCGAGGCTTGGATTGGGGCATCGTTCCGGATGGCCACTGCTGCTGTTGTCTTCTGAA TATTATGACAAAAACACCAATGGAAGAGCTTGGCAAGCTCATAGATTGCATTGAGAAGGCTAATGAAGAACTTGGGTCTG TGGTAAGATATTTGGTGGAGGGGCAGGAGGAGGGTGATCAAGATTTTATAAAGGAAACATCAGCTCTTCTTAACTCAACT GATGCTGAAATAAAGAAGCCCTTGTGCAATTGCCTGATTGATCTTTGTGTCTACCTGAATTTACCTAATAGAGCACGTGA ACTTTTTGACCTAGGATCGACGCTTGAGATATATAAGGATGTACAATTCAGAGCTCCAACTCAGTGGTCTTTGCATCTAA GAAGACTCTCAGTTGGAGCTGCTATGACTGCGTTACATGTTTGGATAAACGACTTGTGTAAGGCTTTGGAATCAGGGGAG GAGCTTCCATCACTAGGAATTAATACTGGGATTGGAAAATACCAGTTTTCAGACAAAGGCTTGGCTAGTGTATTTGAATC GCATTTGAAGAAACTCAAAGCTCCATTCCATGAGGCTCCAGATAAGCCTGGCTGGTTTTTTATATCAAAGAAAGCAGCCA AATCATGGCTGAAGTCTAGGGGTTCAGCCAAATCAATTGCTGCTCTGGACTCTCTGGTTTTAGGTGTTCCAACAATGGCC CTTCCCTATTGATAATGCAGTTAGGGAATGATGTGCCGTGTTATTTTATGCATTTGCCTATTCCTTTAGTGGAAATTTTG TGTGAGCGAACTCAATATGTATACCAAACTTTTTGATGTCTTACCGAGTAAATGAAGACCTGATACTTAGTTTTTCTTTA CTAATGTACACCTACATATCCATATATTATTGATCTTTTAATAATAGACTCTATTTAGCTCAAA
CDS sequence (LotjaGi6g1v0283400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTCGTCTCTGTTCTTCCTACTCTTCACTCACCTCTTTCTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTC GCGCAATTTCAAATTCAAAACCGTTCTTCCCCTTAACCATGCATCGTTGCAGAACGCAAATTCTCACGACCACCCAGTTG CAAGTTCTTCATCTTCAAGGGAAAACCAACCATGGGTCAATCCCAATAGCCCCAGAGCTCAACTTTTCCTCAAGAGGTTC CCTCATGAAAAGTACACTCTCCTCCTCAAACTCACCGACTCTCTCAACTCGTGCGATCCCGCTGACCCACAAGTCTCTGC AATTCTGAACGATTTAGGGGACAATGTCTCAGAACGAGAAGCTGTGTTCATTCTTGATAGGATGGAGAATTCTGAAACCG CACCCGTTGTTCTACGTTACTTGCGGGACAAGATTAAACCCACCAGAGGCAAAGAGTTGGTTCTTTACAATGTGGCCATG AAGGTTTTCAAGAAGTGTAAGGATTTTGAAGGTGCGGAGAAGCTGTTTGATGAAATGCTTCAGAGAAAGTTGAAGCCGGA TAACGTTACTTTCGCGACTATGATTAACTGTGCTAGGTTGTGTTCTATGTCTGACAGGGCTGTGGAGTGGTTTGAGAAGA TGCCGGGTTTCGGGTGTGAGCCGGATGCTGTCACGTGTGCGACCGTGATATTTGCTTATGCGCGTGTTGAGAATGTTGAT ATGGCTGAGCGCCTTTATGATCGTGCGAAGACGGAGAATTGGAGGCTTGACACGGTGACGTTCTCAGCATTGATTAAGAT GTATGGCATGTTGGAAGACTACGATCAATGCTTAAATGTTTACGATGATATGAAGGTTCTTGGTGTGAAACCGAACCTGG GAACGTATAATACTTTGTTGCCTGCCGTGTATAGAGCCAGGAAGCCCCTGCTGGCAAAGCTTATATATGAAGAGATGAAA AGAAATGGTATCTCGCCGGATTATATAACCTATTCAACTCTATTGCGAGCCTATATTGGAGGGTATTTGAGGGAAGACGC TCTTGGTATTTATAGGGAAATGAAGGAGAACAGGATTGGTGTTACTGTAGATCTTTGTAACTTGCTTTTATCTATGTGTG CTGATGTTGGCTTCCTTGATGAAGCTGTTGAAATTTTTGAAGACATAAAAAGTTCTGGGATTTACCAGCCTGATGAGTCG ACATTTTCAAGCTTGATTACTGTATATTCCTGCTTTGCGAAAGTTTCGGAGGCAGAAGCGATGTTAAATGAAATGATTGA ATCTGGATTTAAGCCTAATATCTTTGTTATAACCCCGCTTGTCAAATGCTATGGAAAAGTAAAGCAAATTGATGATGTTG TGAAGATAGTTAAGCGAGGCTTGGATTGGGGCATCGTTCCGGATGGCCACTGCTGCTGTTGTCTTCTGAATATTATGACA AAAACACCAATGGAAGAGCTTGGCAAGCTCATAGATTGCATTGAGAAGGCTAATGAAGAACTTGGGTCTGTGGTAAGATA TTTGGTGGAGGGGCAGGAGGAGGGTGATCAAGATTTTATAAAGGAAACATCAGCTCTTCTTAACTCAACTGATGCTGAAA TAAAGAAGCCCTTGTGCAATTGCCTGATTGATCTTTGTGTCTACCTGAATTTACCTAATAGAGCACGTGAACTTTTTGAC CTAGGATCGACGCTTGAGATATATAAGGATGTACAATTCAGAGCTCCAACTCAGTGGTCTTTGCATCTAAGAAGACTCTC AGTTGGAGCTGCTATGACTGCGTTACATGTTTGGATAAACGACTTGTGTAAGGCTTTGGAATCAGGGGAGGAGCTTCCAT CACTAGGAATTAATACTGGGATTGGAAAATACCAGTTTTCAGACAAAGGCTTGGCTAGTGTATTTGAATCGCATTTGAAG AAACTCAAAGCTCCATTCCATGAGGCTCCAGATAAGCCTGGCTGGTTTTTTATATCAAAGAAAGCAGCCAAATCATGGCT GAAGTCTAGGGGTTCAGCCAAATCAATTGCTGCTCTGGACTCTCTGGTTTTAGGTGTTCCAACAATGGCCCTTCCCTATT GA
Protein sequence (LotjaGi6g1v0283400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSRLCSSYSSLTSFSSSSSPSSSSSSRNFKFKTVLPLNHASLQNANSHDHPVASSSSSRENQPWVNPNSPRAQLFLKRF PHEKYTLLLKLTDSLNSCDPADPQVSAILNDLGDNVSEREAVFILDRMENSETAPVVLRYLRDKIKPTRGKELVLYNVAM KVFKKCKDFEGAEKLFDEMLQRKLKPDNVTFATMINCARLCSMSDRAVEWFEKMPGFGCEPDAVTCATVIFAYARVENVD MAERLYDRAKTENWRLDTVTFSALIKMYGMLEDYDQCLNVYDDMKVLGVKPNLGTYNTLLPAVYRARKPLLAKLIYEEMK RNGISPDYITYSTLLRAYIGGYLREDALGIYREMKENRIGVTVDLCNLLLSMCADVGFLDEAVEIFEDIKSSGIYQPDES TFSSLITVYSCFAKVSEAEAMLNEMIESGFKPNIFVITPLVKCYGKVKQIDDVVKIVKRGLDWGIVPDGHCCCCLLNIMT KTPMEELGKLIDCIEKANEELGSVVRYLVEGQEEGDQDFIKETSALLNSTDAEIKKPLCNCLIDLCVYLNLPNRARELFD LGSTLEIYKDVQFRAPTQWSLHLRRLSVGAAMTALHVWINDLCKALESGEELPSLGINTGIGKYQFSDKGLASVFESHLK KLKAPFHEAPDKPGWFFISKKAAKSWLKSRGSAKSIAALDSLVLGVPTMALPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 15 | 676 | 662 | 5.9E-186 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 693 | 669 | - | – | |
| MobiDBLite | 45 | 68 | 24 | - | – | |
| Gene3D | 93 | 240 | 148 | 5.6E-22 | ||
| ProSiteProfiles | 152 | 186 | 35 | 10.665 | ||
| Pfam | 153 | 197 | 45 | 1.1E-10 | ||
| TIGRFAM | 154 | 187 | 34 | 1.3E-6 | ||
| ProSiteProfiles | 187 | 221 | 35 | 9.471 | ||
| TIGRFAM | 189 | 223 | 35 | 1.8E-4 | ||
| Pfam | 212 | 269 | 58 | 1.1E-4 | ||
| ProSiteProfiles | 222 | 256 | 35 | 8.758 | ||
| TIGRFAM | 224 | 257 | 34 | 0.0026 | ||
| Gene3D | 242 | 343 | 102 | 1.7E-23 | ||
| ProSiteProfiles | 257 | 291 | 35 | 10.797 | ||
| TIGRFAM | 259 | 292 | 34 | 1.1E-5 | ||
| Pfam | 280 | 338 | 59 | 6.1E-13 | ||
| ProSiteProfiles | 292 | 326 | 35 | 10.512 | ||
| TIGRFAM | 295 | 327 | 33 | 1.1E-4 | ||
| ProSiteProfiles | 327 | 361 | 35 | 8.67 | ||
| TIGRFAM | 329 | 360 | 32 | 0.0026 | ||
| Gene3D | 344 | 536 | 193 | 2.6E-30 | ||
| Pfam | 346 | 486 | 141 | 1.7E-9 | ||
| ProSiteProfiles | 362 | 396 | 35 | 9.361 | ||
| TIGRFAM | 366 | 398 | 33 | 5.6E-4 | ||
| ProSiteProfiles | 398 | 432 | 35 | 11.027 | ||
| TIGRFAM | 401 | 434 | 34 | 1.6E-5 | ||
| ProSiteProfiles | 433 | 467 | 35 | 8.057 | ||
| SMART | 578 | 667 | 90 | 7.5E-8 | ||
| ProSiteProfiles | 581 | 657 | 77 | 12.963 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0283400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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