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Lj2g3v1560740.1

Overview

Field Value
Gene ID Lj2g3v1560740
Transcript ID Lj2g3v1560740.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ABC transporter E family member 2-like [Cicer arietinum] gi|502161914|ref|XP_004512327.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 267 267 – –
PANTHER
PTHR19248
2 269 268 7.30E-214
IPR013283
SUPERFAMILY
SSF54862
6 145 140 8.64E-16 –
Pfam
PF04068
6 37 32 1.30E-14
IPR007209
Gene3D
G3DSA:3.30.70.20
10 83 74 1.20E-12 –
PRINTS
PR01868
24 39 16 8.80E-74
IPR013283
ProSiteProfiles
PS51379
46 75 30 10.927
IPR017896
Pfam
PF00037
49 71 23 2.50E-09
IPR017896
PRINTS
PR01868
52 76 25 8.80E-74
IPR013283
ProSitePatterns
PS00198
55 66 12 –
IPR017900
ProSiteProfiles
PS50893
70 304 235 10.845
IPR003439
PRINTS
PR01868
79 99 21 8.80E-74
IPR013283
SUPERFAMILY
SSF52540
101 266 166 1.28E-25
IPR027417
Gene3D
G3DSA:3.40.50.300
101 267 167 4.70E-27
IPR027417
SMART
SM00382
102 275 174 2.20E-06
IPR003593
Pfam
PF00005
102 244 143 9.30E-18
IPR003439
PRINTS
PR01868
107 132 26 8.80E-74
IPR013283
PRINTS
PR01868
140 156 17 8.80E-74
IPR013283
PRINTS
PR01868
156 182 27 8.80E-74
IPR013283
ProSitePatterns
PS00211
217 231 15 –
IPR017871
Phobius
TRANSMEMBRANE
268 294 27 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
295 304 10 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v1560740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1560740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.