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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2171850 |
| Transcript ID | Lj2g3v2171850.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | – | – | |
| PANTHER | 202 | 209 | 8 | 0 | – | |
| PANTHER | 202 | 209 | 8 | 0 | – | |
| PANTHER | 236 | 300 | 65 | 0 | – | |
| PANTHER | 236 | 300 | 65 | 0 | – | |
| SUPERFAMILY | 269 | 306 | 38 | 1.17E-38 | ||
| Gene3D | 280 | 302 | 23 | 7.30E-18 | ||
| SMART | 281 | 654 | 374 | 2.70E-18 | ||
| Pfam | 288 | 780 | 493 | 2.80E-85 | ||
| PANTHER | 316 | 378 | 63 | 0 | – | |
| PANTHER | 316 | 378 | 63 | 0 | – | |
| Gene3D | 350 | 377 | 28 | 7.30E-18 | ||
| SUPERFAMILY | 351 | 386 | 36 | 1.17E-38 | ||
| Gene3D | 405 | 479 | 75 | 7.90E-11 | ||
| SUPERFAMILY | 407 | 479 | 73 | 1.32E-09 | ||
| PANTHER | 407 | 467 | 61 | 0 | – | |
| PANTHER | 407 | 467 | 61 | 0 | – | |
| SMART | 410 | 478 | 69 | 3.60E-08 | ||
| ProSitePatterns | 411 | 477 | 67 | – | ||
| CDD | 412 | 477 | 66 | 1.13E-07 | – | |
| ProSiteProfiles | 483 | 646 | 164 | 9.836 | ||
| Gene3D | 488 | 648 | 161 | 7.30E-18 | ||
| SUPERFAMILY | 490 | 678 | 189 | 1.17E-38 | ||
| PANTHER | 490 | 559 | 70 | 0 | – | |
| PANTHER | 490 | 559 | 70 | 0 | – | |
| CDD | 493 | 628 | 136 | 0.00291587 | – | |
| PANTHER | 584 | 726 | 143 | 0 | – | |
| PANTHER | 584 | 726 | 143 | 0 | – | |
| SUPERFAMILY | 686 | 718 | 33 | 1.75E-34 | ||
| SUPERFAMILY | 748 | 784 | 37 | 1.75E-34 | ||
| PANTHER | 760 | 781 | 22 | 0 | – | |
| PANTHER | 760 | 781 | 22 | 0 | – | |
| SUPERFAMILY | 849 | 865 | 17 | 1.75E-34 | ||
| Gene3D | 1348 | 1419 | 72 | 4.70E-09 | ||
| SUPERFAMILY | 1349 | 1406 | 58 | 1.41E-10 | – | |
| CDD | 1353 | 1405 | 53 | 3.71E-07 | – | |
| ProSiteProfiles | 1354 | 1402 | 49 | 10.94 | ||
| SMART | 1354 | 1401 | 48 | 1.60E-04 | ||
| PANTHER | 1369 | 1401 | 33 | 0 | – | |
| PANTHER | 1369 | 1401 | 33 | 0 | – | |
| PANTHER | 1438 | 1605 | 168 | 0 | – | |
| PANTHER | 1438 | 1605 | 168 | 0 | – | |
| SUPERFAMILY | 1439 | 1640 | 202 | 1.75E-34 | ||
| Gene3D | 1446 | 1584 | 139 | 1.00E-06 | ||
| ProSiteProfiles | 1451 | 1622 | 172 | 9.065 | ||
| Pfam | 1455 | 1571 | 117 | 2.70E-06 | ||
| SMART | 1479 | 1571 | 93 | 1.80E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj2g3v2171850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2171850.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.