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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3213280 |
| Transcript ID | Lj3g3v3213280.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X1 [Cicer arietinum] gi|502148467|ref|XP_004507174.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 651 | 651 | 0 | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 651 | 651 | 0 | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| Hamap | 2 | 652 | 651 | 32.507 | ||
| Phobius | 7 | 18 | 12 | – | – | |
| Pfam | 8 | 115 | 108 | 2.20E-11 | ||
| Phobius | 19 | 22 | 4 | – | – | |
| Phobius | 23 | 678 | 656 | – | – | |
| TIGRFAM | 128 | 627 | 500 | 3.70E-201 | ||
| Gene3D | 188 | 370 | 183 | 1.80E-59 | ||
| SUPERFAMILY | 188 | 435 | 248 | 2.53E-67 | ||
| SMART | 224 | 364 | 141 | 7.00E-21 | ||
| CDD | 225 | 362 | 138 | 3.21E-25 | – | |
| Pfam | 229 | 361 | 133 | 8.00E-41 | ||
| ProSitePatterns | 332 | 350 | 19 | – | ||
| Gene3D | 371 | 438 | 68 | 8.90E-25 | – | |
| Pfam | 424 | 626 | 203 | 5.20E-72 | ||
| SUPERFAMILY | 445 | 634 | 190 | 3.66E-61 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v3213280.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3213280.2, powered by CORGI.
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