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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0684200 |
| Transcript ID | LotjaGi1g1v0684200.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125108142..125113551) extracted from Lotus japonicus Gifu genome v1.2.
ATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCACGAAGTCGAAAAGACCTGTCAAAAT GATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGCGTAGTTTTAATAATTTGGATACTA TGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCTCGTAAGGCGAGGGCTAGCAGATGC GTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCTTGCCCAGGAGGAGGCGAGACGGAT GGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTCA AGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGATTTGTTGCTGTT GAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGCTCGTCTTCTTGGTAAATGCTGTCT TTCCTTTATCCATGAAGTGTTTTTATTGATGAAAATTTTCTTCCTTGTAATCAACCTTACCAATTTGCCTCTTTTTTTTT TTCTTTGTTGTTTGAAAGAAGGTGGAAGTGATTTGGTTATATTATATTTGTTCTGGTGCATTTATCTATTTTACTTGGAG AGTAACCTAGGTTTTGATGATTTATGGGAAAATGAGGGAAAAAGTAAAAAGATGAGAATTTTCTTTTTTTGTAATCAACT GTCCATTTCTGATCAGCTTTCCATGGTTTTCTCTTTGGCTTTTGTCGTTTGGAAGAATGTAGAAGTGATTTGATTACATT TGGACATTTGGTTCTGTGCATTTATCTATTTTACTTGAAGAGTCACATAGGTTTTGATGATTTTATAGAAAAAAAAAGAG GAAGATAGTAACAGAGGATCGGTAAACTAGTAAACTACCCCACCGTATAATGAGTTACAGAGAGAAGAGAAGGATCATGC ACTGGATTCTCATTCCAAAGGCTCTAAAACCTTTCATTCCTAGTGAGCCATTGCTAGATGATGCTATCTAGCCTTTTTTT TTTCAAAATGATTCATCTAAATGGGCTATCATGATGTCAAATATTACTTGGAGTTGGCAAATGTTTCTCAGTGCCCTCTC TGGCAGTCAATATTACTACGTGTTATTGGCATGATAATAGTGTTGAAGAAAGTTATTAAAGGTATAAACATTCCAAGGAT GACTTAATTTATTGCTGCCTTGATTGATCTGATTGTTGACTAATTTGCTTTAAATGTGTTCAAAGTGAGTTGGAGTTTAT CTATGAATTTGTTTATTTATTTATTCATTCATTTTTTGGCTGGTCTTTCTGTTCTTTCTTCTATTATTTTATTTTGGGAT GGGTCTATGCAATATTCCGTTATCACTCAATGAAACGTTTAGGCTTACTCCTTGAAATTTTCAGGTCACAACTATATTGG GTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATC CTTCTAATATTCGCTCTCAGGTTTCTATTGTATCCTCATTTATTCATTTTCCCGCACACTATATGGACATATCTTTTATC CTTTTTTTTAATCTTGTACTCCATTGAGTGAGAACAGGTTATTCGCATGGTTGGTGAGGGTGCTGACACTATTGCTGCTA CTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAG GTAATTACCAGTTCCTAGTTTTCTTCACGACATATGGTATAGTTTTTTTGTGTGTTTAAAAGCATACTTATTTTCTTCCG AAATCAAAATCTCAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCACTCAAATTTTGGGCCG TCGTACCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGA TTGCAACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTTAGTATGAATTATTTTACATTGGTTTCATTAAGGGAA TTTTCTATTCCATTTTCAGCTTTATCATCAACTTGCTTGGAGCACCCTGCCTTATTTTCAGTCATTTCATTTGTGAGATT AATTTTGCATTTGTATTTGATAAGTATTGAATCTATTGATTAAATTCTTGGATTTGGTATTTTATCACACTTTTGGGGAT CCTGAATAATGTTAGTTTTGTCTATGATTTAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATATCGT GGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCTTTTCATTGATGAAGT TCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGGG AACTACAGGTCATATTTCCCTTGACGGCTTGACGTGTTCAAAATATATTTCCTTTTGATTCTGACCTCAAATTCATTTTT TTTGTTGTTGTTGGGCTAGGGGTTTCATTTTATATACCCTATCCTTGTCATCAATCATATCTATCAATTATCTTGTTCCT TCATGGCCAATGCTCGCCTGCATTGGTTGACGGTGAATAAGTTACTAAATCAAGTTTCTTCTCTTGCGTTGTGCTTGTGC ACAAATCCCCATTTTTTCCAATATGCTTTGTTAGTTTTGACTTTTGACAACAATGTATATTTTAGTTTTTTTTACTATGA AGGTGTTTTGCTAGCTTGTCTAATATATTTTAGTTTTTAAATCTTGTACCTTGTACCCGTACCTGGTACCGGTACCGTAG CTGTATCATTGCAACTTAGATGATCATGGCAGACTTATGGTGAAATGTGAAGACATATGGTTATATGATAATATCTATGC TAAACTTGTCACTATTGCTCATTTGGAACTGTTCTAAAAAAATGACTGCGTATTATGCAGTGTATAGGAGCCACAACACT GGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTG TGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGCTATACAGATGATGCT CTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGGTTTATCATAATTTATACTTCTGCACTTCCTCTGTTCATTTT CCTTTTCATTTATGCTGGAAGGGAATATTTCTTTTAATTGTTATTTACAATATTAAACTGAAAACTCTTCACTGAATTTA TGTTGATCTTCTGGAATATAGCATTATGTATATCTTAAGTAATTTCTAGCTTATAAAAAATGGTGCCTCCTGCAGTGATC GGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACATGCCCAGGTACATTGT GTGACTCCCCTCCCTGAATCAACAGTTAATCATTTGTCTATTGTTGAACTAATTGAACCAGATTTCCATATTTACAGTTG CCTGAAGAAGCAAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGATGAAGCTGTTCGCAACCAAGACTT TGAAAAGGTAACGCTTTTATCTGAGATTTAACCATTAAAGTTTTAACATCAACTAACGTTTTCAGGATATAATAATCCTT ACTCCAATGAGTAATCTTGTTTGTCTTCAAAAAGAGATGTTCTACCTTTCAGTTAACATTAAAAGAATGGAGGATTATTT TCCATAAGTTCTGATGTGACTTCTAGTTCTAGTTTGTTGAGTGTAAAGTGCATTTAGTGGTTTGTTTCTTGTTCATACCA ATTATGTCTCCAAATTTATTCGCTTTTTGGATTATAAGTAACGGGCTTGACGATACATGGATTTCTTTACAGGCTGGAGA GCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGA GTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTATTCCTGTT GACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGGATGA AGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTCCAATTGCAAGCTTCA TCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCC ATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGG TTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAG CCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAAGGGAGAACTGTGGAC TTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGATTTGA CCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTTAGGC CTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGACATA ATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAGTGGT TGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGGAGGACAGCATGGCAG AGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTC AATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGAGGTTCTTCCTGTGTAAATCGTAATAACATGGTTGCCTTG CTAAGTTATTTGTACTTTTTTAAAAAAATATTATACAGTCATAGCTGTTTTAGTTGTAAAAAACTTTAATGGACTACTGG TCTGGTTTGCCCATATAGCCAACATAGCAAGCAAAGAGAGGTTGGGATGA
CDS sequence (LotjaGi1g1v0684200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGCGTAGTTTTAATAATTTGGATAC TATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCTCGTAAGGCGAGGGCTAGCAGAT GCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCTTGCCCAGGAGGAGGCGAGACGG ATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCT CAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGATTTGTTGCTG TTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGCTCGTCTTCTTGGTCACAACTAT ATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGC TGATCCTTCTAATATTCGCTCTCAGGTTATTCGCATGGTTGGTGAGGGTGCTGACACTATTGCTGCTACTGTTGGCCCCG GAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTAGAT CCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCACTCAAATTTTGGGCCGTCGTACCAAAAATAATCCTTGTCTTAT TGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGCGATGTTCCTGAAACCC TAGAGGGAAAGAAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGG TTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCTTTTCATTGATGAAGTTCACACACTAATTGGAGC TGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGGGAACTACAGTGTATAGGAG CCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAAAGTGCCA GAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGCTATAC AGATGATGCTCTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATT TGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACATGCCCAGTTGCCTGAAGAAGCAAGAGAGCTCGACAAGGAGGTC AGGCAGATTGTGAAGGAGAAGGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTGCGAGACAGAGAAAT GGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCAGCAGATGGAG GTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTATTCCTGTTGACAAAGTATCGACAGAT GAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTAG CCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTCCAATTGCAAGCTTCATCTTTTCTGGGCCAACTG GTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATG AGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCA ACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCA ACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAAGGGAGAACTGTGGACTTCAAGAACACCCTTCTT ATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAA AGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTTAGGCCTGAGTTTCTGAATAGGT TGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGACATAATGCTTAAGGAGGTGTTT GAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAGTGGTTGACGAAGGTTATAATCC AAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTAGAG AGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGTGACAGT GGTGCCCCAGAATCACTGCCAGAGCCAACATAG
Protein sequence (LotjaGi1g1v0684200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARR MGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARLLGHNY IGSEHLLLGLLREGEGVAARVLENLGADPSNIRSQVIRMVGEGADTIAATVGPGSSSNKMPTLEEYGTNLTKLAEEGKLD PVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETLEGKKVITLDMGLLVAGTKYRGEFEER LKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP EPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEV RQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVDIQHIVASWTGIPVDKVSTD ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDM SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL IMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF ERLKTKEIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSDS GAPESLPEPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 888 | 850 | 0.0 | – | |
| PANTHER | 39 | 888 | 850 | 0.0 | – | |
| Gene3D | 58 | 207 | 150 | 6.0E-58 | ||
| ProSiteProfiles | 60 | 202 | 143 | 48.699 | – | |
| SUPERFAMILY | 61 | 201 | 141 | 4.0E-30 | ||
| Pfam | 74 | 126 | 53 | 4.5E-17 | ||
| Pfam | 150 | 201 | 52 | 2.2E-17 | ||
| Gene3D | 212 | 403 | 192 | 1.0E-73 | – | |
| SUPERFAMILY | 220 | 497 | 278 | 1.13E-77 | ||
| CDD | 243 | 395 | 153 | 3.45179E-21 | – | |
| SMART | 260 | 400 | 141 | 2.3E-13 | ||
| Pfam | 265 | 381 | 117 | 3.8E-14 | ||
| Coils | 314 | 334 | 21 | - | – | |
| ProSitePatterns | 355 | 367 | 13 | - | ||
| Pfam | 403 | 504 | 102 | 8.1E-35 | ||
| Gene3D | 404 | 533 | 130 | 2.8E-39 | – | |
| Coils | 473 | 493 | 21 | - | – | |
| ProSiteProfiles | 477 | 512 | 36 | 11.605 | ||
| Gene3D | 535 | 781 | 247 | 1.3E-97 | – | |
| SUPERFAMILY | 552 | 869 | 318 | 2.92E-79 | ||
| CDD | 577 | 725 | 149 | 2.13106E-17 | – | |
| Pfam | 602 | 776 | 175 | 1.9E-55 | ||
| SMART | 603 | 784 | 182 | 2.6E-9 | ||
| PRINTS | 607 | 625 | 19 | 5.6E-41 | ||
| ProSitePatterns | 637 | 655 | 19 | - | ||
| PRINTS | 652 | 670 | 19 | 5.6E-41 | ||
| PRINTS | 681 | 699 | 19 | 5.6E-41 | ||
| PRINTS | 714 | 728 | 15 | 5.6E-41 | ||
| Pfam | 783 | 863 | 81 | 2.7E-23 | ||
| Gene3D | 783 | 883 | 101 | 1.7E-26 | – | |
| SMART | 783 | 873 | 91 | 6.5E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi1g1v0684200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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