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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0256000 |
| Transcript ID | LotjaGi4g1v0256000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT5G39040.1 transporter associated with antigen processing protein 2; Swiss-Prot: sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25; TrEMBL-Plants: tr|I3SLG6|I3SLG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0256000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60993625..60999713) extracted from Lotus japonicus Gifu genome v1.2.
GAACAAGGTTATCTTATTGCATTGGTATGATTATTATTATTATTTTATCATTACATTTTTATGGACATTGTGCATAACGT ATTGGTATTGTACTCTTCTCTTATCAAACAAAGCGTGAGAAGAGTGGAAGCACAAGGAATACAAGAGCCATTTTCAGGAA CAAGAAGAAGATGAACGGGCACAGAAGCGAGAGAACCCCTCTCTTGGAAGCTGAGCGCGGTGCCGTAAGTCAAATTCTCT CCCTCTCTCTCTTCTTCACCTGCAACTATTTCAGTTTTCAGTTCTGCAAATTAGGTTCACTTCAAAATTCAGCTCGATTC TATTCTATTCAAATGTTTCATTTCGTTTTTTTAATTTCCACTTTGATTGCTGAATGATATTCAACATTACTATGAGAACA AGAGATAACGCTTCTGAATATTGCATGGTTTCTTTAGGTTTAAGGGTACACTACAGAGTGAGTCCCATTTTGTTCTTCTG TCAATGAAACTAGTAGTGTTAACTAAGCCCCCAATTATTGGTTTTTGACATGTTTCTGAGATTGCATATATCCTTGTACT GCTGCTCCAATAGTAGTAAGTTTTTGATTTTTCCAGTTTCTTATGTAGGGAAGGGGAAAGAGAAATGAGGATGCTTCTGA AGGTCCAGTCTCAGACCTTGAACACGGTGATGCCGTACCGGTAATTGAACTCCATATATATATATATATATATATATTAT TGCATCATTCAATAACATGTTTGGAAATCATTTTGCAATTTATTTGAAAACCGAAATTGATTCTGGGGAGAAGCTTCTGT GAGTAGCTTCTCGTGCCATAATTGATTCTGAGGAAAAATAAGCTGATTCGAACATGCTTTAACATCTCATATTCATCTAT GTACTATTTTCTTTTGCTAAGTCTGGGCATCAAAATTTCAGGCGGCAAATGTGGGGTTCGGTAGAGTGCTTTCACTTGTA AGTGGTCAGTATTTTTCTGGATGGATTGGTGCCATGTTTTTGTGGTTGTTTAAAAACTTCTTTTTTTGTTGTTTTTTCGA ATAATCACAGGCAAAGCCTGAGGCTGGAAAGTTGGTGGTTGCTACGGTGGCTCTGTTGATTGCAGCCACTTCGAGTATCT TAGTTGTATGCATCATTTACTATCTCTCCTCTGTCTATTTCTCTCTTAAACACATATACTTAAGCACATGTCTTTCTAAA ATTTATGTCAACAACATGTGTTTATATTATTTGCTGCCAATTTACCTGTTGAAGGTGGTTTCTAATTAACATGGAAATGT TCCTGGTGCAGCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATGAGGACCACAGAGCTGAAGCAAGAA GCATTAAATGCTGTCAAGAGCACCATCCTAGAAATCTTTCTGATTGTTGTTTTTGGGTATGATTCATCCTTGCTTGAGCA GTTTCCAACTGATCATATAGTTATTTTTTAATGATTTCTGTTATGTTACATGAATTTCCTTGGGTCTTAATTGGTTCACT GAATTTTCTGGGTGTTACAGTTCAATTTGCACAGCACTTCGAGCTTGGCTCTTTAGTTCTGCTAGTGAAAGGGTTGTTGC ACGACTCAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGTCAAACAATAGTCATAATGACTCTTGCAGCTTGTTATTA GCCTTAGCTTGCAATTAAGCTTGTTTGTTATGGATGATGAGTTTTCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGG GGAACTTTTAAGTAGGTTATCAGAAGATACACAGATCATAAAGAATGCTGCAACAACCAATCTTTCTGAGGCTTTGAGAA ACTTGTCAACTGCATTTATTGGGCTCAGTTTCATGCTTACAACATCATGGAAGTTGACATGTGAGTAATACACGCCCTCC TGCACTCTCATGTTTATCCCAATGTTTTAAATGGGGGGACCAATCATTGAACCTATGAATACACTGATTCACATTTCTCC AGTTCAACCATATATAGTCAAATAGGTGATACTTAACTATATTTAAAATATTATATATTACAAAAGTAATTAGTTAACAT AAAAACTCATATGAAATCAAAATAGATTAAACTTTAAACTAGCATAAATGGGCAATTTTTTATGAGCCTGTATATGATAA AAAATTAATGAGAAAATTGCTAAATAATATTAATCCATATGTGGACCTCATACATGAGCTTTTCTTTGTCTAAAAAAATA TTTTTGGTTGAATAAGCCAAGGTTGAAATCGGTTTGTCATCACTCATTAGTATTTTTTATTGGTTTTGGACTAGCTCAAT CAGTTCCTCAACTGCCGTTTTTTGGGCTGTCCAAAATAGTGACCGGAATGGTTCATTGGCTTTCCGATGGAATTGAGTCT GTTAATATATACATTCTTATCCTAATCGGTGCTCTCTTTTTCTCTCTTGACAACAACTTTTAGTGTTGGCTTTGGCTGTT GTACCTCTTATTTCTGTTGCTGTTCGACAATTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAAGCTGCAGCTGC AGTAGCTTCTTCAATTGCTGAGGTATGTGATTATGTGAATGTCTCTCCAAATTAAACAAATACTATAATAGAGGATTTTC AAACTGATGTTACTTTTGTTTGTGTTGCTTAGGAATCCTTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGAT TATGAAATAACACGCTACTCTGAGAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTGTGAGTTGGTCAATTAT GTCCTGATTCACATCCTTGTATTTAGTTTAATATGTTTGTCCTTACAACATCTTGTCTTACCTGTTTGGTGATACAGAAA GTTGTGGGACTCTTTTCTGGAGGCCTTAATGCGGCATCTACACTATCAGTTATTGTAGTTGTTATATATGGAGCAAATTT AACAATCAAGGGTGCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGGTAAGTTACTCTTACTAG TTTCCCCTTTTTCATGTGAAGGAAACCTTATACACAATTGAAAAGTTTGTATAATCCAAGGGTGTTAGTTGAGTAAGTGT ATGTTTGGGTAAACTGCTTACACTTATGTTGATAAACACTTAATACACAAATGCTTACTCCTGAGCTTCTAAAATAAACT TTTAATAAAACACCCAACTAAGTGTTTATGCTATAAGATAGGCTCAAATAAGTTCTTCTAGACGTACCCTGAAATGCTAG TTTGTTTTGATTTAGTGATTCATTTCAATGTTAGTTTGATCCGTTTCATTTGAACTGCTAATATTGTATTTATGCTGACT CAATTACTTTGCCTTGTAGTTGGATCCTCTATATCTGGTCTTTCCGGATTGTATACAGTAGTTATGAAAGCCGCAGGTGC GAGCAGAAGGGTATTTCAAATTATGGATCGTGTCTCATCCATGTCTAAGTCAGGAACTAAATGTCCTCTGGGGTCAGTTT CTTAGATTTCCTAAAGTATTTCTTTAAGTGCTATTTTCTGAGACAGGGGAGTACAGCTGCCCTTCTACTTATTTTTAGTA TTTTTCTATCGTAGGACACACCAGTGACCAGTCTAGGATGTGTGGATTAAGGCTCACCTTTTGGACTGAGAAAAAAGTTA TTGATGGCTCATTAAGTCATTATGGAACCAACTGCTATATTTAGACACATCATGACAACCCCTATTTGCTTAATATTATA AGAGAAGTTGAACTTATAATGTAGAGTATGAAAGCCTGACACAGGGTGGGAACACAAAAAATCATAGGCATCTTTCACTC GCGGTTTTATAATGTGAAATTCAGAATCATTTTATTGTTTAAATATACCTATTTTCTAAAATATTTTCTATACGAGGTAT GTGATCTTTTAAAATAAGTGATACTAAATTATTATTGCAGTGATCAAGATGGGGAAGTGGAACTGGATGATGTATGGTTT TCCTACCCATCTCGCCCAAGTCATCCAGTGCTCAAGGTAGCTGTTCCGTTTTATTTGTTTGCTCGGGTTATACATCTTCA ATGGTAAATAACTAAAATAGTACACTTCATCATTCATTTTAGGGCATTACAATGAAACTGCACCCTGGCTCAAAGGTTGC TCTTGTTGGTCCTAGTGGTGGTGGAAAGGTGTAGGCTCTTCTCTTATTATCATCTTCTTTTTCTTTTTCCTTTCTTCCTC TTAATTTTAGCAGCTTATCATTTCGCGAGGTTATTGTTTAACATGCTTGGATTGAACAATATAAAGCAAGGTACAGTGAA GTGAAAGGAAAAACATCATGTGTATGAAATCGTTGCTTGCTTGTGCAGACTACAATTGCAAACTTAATTGAAAGATTTTA TGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGCAGAAATATCACACAGGCATTTACACAGAAAGGTAT CTTGAGCATTGCTTTTATACATCACTGACAACAAATTATCCAATTTAGTGTTGTGGAGTCCATTTTTAGTTTTCAGAACA TGTATATCTTGTATTATTTTGAGTATGGGATAGAATCCTATGAAGTCTAGGCGAAAATTTATTAATTCATTCCTTATGCC CATGACATTGTCACCTATTATATTTCATGTTTTACAGCCATGTAATTAAGCTTAAAAGTTAAAACTGGAGTTGTAAAAGT TGATGTTTGAAAAATTAATTATTGACCAAAAAAAAAAATTCAGGGAGGAACTAATTTAACATGATGATAACAAAAGAAAC CAAATTCTCCCAAATCTAATTTCTATTGTGATTTTGATAACTTCAATGCAGTTTACTCCCGTATTTGCAGATCAGTATCG TGAGCCAAGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCTGTT GATATAGAAAATGCAGCTGTAATGTTTCATGTATTCTTTTACTAACAAGACCCTCTCTCCCAAATCTTGCTTAATGTATG GATTTGAATGCAGAAAATGGCCAATGCGCACGAGTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGTTGGAGAGC GTGGGGTAAGGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAATTCTCCTC CTGGACGAAGCCACCAGTGCCTTGGATGCTGAAAGTGAATACCTAGTGCAGGTGATTTCTTTTTCCAGATTCATGTAAAC TTCTTCTAATCTTTTAATTTTTGCACCGTAAGCTAATGATGTGATGGATGTGGTGCAGGATGCCATGGATTCTATCATGA AGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGGC CAAGTAGCTGAGAAGGGCACACATGATGAGCTTCTCAGCCAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTCCA AACAACAAAAGATGAAAATCAAGTCATCTAGTCTCTGTCTTGCAAGTCATGAAGAACCGTCACAATGTTCTTGTTGGAAA GACGAGTCTACCCCCAAAGGGGATTGGGATAATCGATTCTTAGGAGCACAAAACTTCTTCCTATGTCCCTCTCTACCATA GTTGCAAGTTGCAACTTCCATAGTTGCAAGTTGCAACTTTAAGTTGTAGCCAGTCCCTCTAGTCTGAAGTCAATGTTGCT CCTTTGATTAAGTATTCTGTTTTTCAGCACTCTGAATTGAGTAGTGCCCAAGATTTTAAAGCTTACAAGTGATTCTTGAA TTTGGTTTGTCCCCAAATTTTGTGAAAATTTGCAGTTGAAATGATCTATACCATAGCCTCAAGTATGAGGCTTGCAAACA ACTAGTGCTGATTAAACACAACATTATCACAAGAATATGGGATGCATTTTTCTTTTCTCTCCCTTTTATGTTACACCACT TCGAAATACTGATTATTGTTGATTAGGGGCGGAATCATTGTTATTCCACTAGTTGAAACAGTAAAACTACATCCATAACT GATTAGCTG
CDS sequence (LotjaGi4g1v0256000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGGCACAGAAGCGAGAGAACCCCTCTCTTGGAAGCTGAGCGCGGTGCCGGAAGGGGAAAGAGAAATGAGGATGC TTCTGAAGGTCCAGTCTCAGACCTTGAACACGGTGATGCCGTACCGGCGGCAAATGTGGGGTTCGGTAGAGTGCTTTCAC TTGCAAAGCCTGAGGCTGGAAAGTTGGTGGTTGCTACGGTGGCTCTGTTGATTGCAGCCACTTCGAGTATCTTAGTTCAA AAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATGAGGACCACAGAGCTGAAGCAAGAAGCATTAAATGCTGT CAAGAGCACCATCCTAGAAATCTTTCTGATTGTTGTTTTTGGTTCAATTTGCACAGCACTTCGAGCTTGGCTCTTTAGTT CTGCTAGTGAAAGGGTTGTTGCACGACTCAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGAT GTCACTCGAACCGGGGAACTTTTAAGTAGGTTATCAGAAGATACACAGATCATAAAGAATGCTGCAACAACCAATCTTTC TGAGGCTTTGAGAAACTTGTCAACTGCATTTATTGGGCTCAGTTTCATGCTTACAACATCATGGAAGTTGACATTGTTGG CTTTGGCTGTTGTACCTCTTATTTCTGTTGCTGTTCGACAATTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAA GCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGA TTATGAAATAACACGCTACTCTGAGAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTGGGACTCT TTTCTGGAGGCCTTAATGCGGCATCTACACTATCAGTTATTGTAGTTGTTATATATGGAGCAAATTTAACAATCAAGGGT GCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTTGGATCCTCTATATCTGGTCTTTCCGGATT GTATACAGTAGTTATGAAAGCCGCAGGTGCGAGCAGAAGGGTATTTCAAATTATGGATCGTGTCTCATCCATGTCTAAGT CAGGAACTAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTGGATGATGTATGGTTTTCCTACCCATCTCGCCCA AGTCATCCAGTGCTCAAGGGCATTACAATGAAACTGCACCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGG AAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGG CAGAAATATCACACAGGCATTTACACAGAAAGATCAGTATCGTGAGCCAAGAGCCTACACTCTTCAACTGTTCCATAGAG GAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCGCACGA GTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGTTGGAGAGCGTGGGGTAAGGCTTTCTGGAGGGCAGAAACAGA GAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAATTCTCCTCCTGGACGAAGCCACCAGTGCCTTGGATGCTGAA AGTGAATACCTAGTGCAGGATGCCATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAAC TGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGGCCAAGTAGCTGAGAAGGGCACACATGATGAGCTTCTCAGCC AGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTCCAAACAACAAAAGATGAAAATCAAGTCATCTAG
Protein sequence (LotjaGi4g1v0256000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGHRSERTPLLEAERGAGRGKRNEDASEGPVSDLEHGDAVPAANVGFGRVLSLAKPEAGKLVVATVALLIAATSSILVQ KFGGKIIDIVSGDMRTTELKQEALNAVKSTILEIFLIVVFGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFD VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMLTTSWKLTLLALAVVPLISVAVRQFGRFLRELSHKTQ AAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKG AMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRVSSMSKSGTKCPLGDQDGEVELDDVWFSYPSRP SHPVLKGITMKLHPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLAEISHRHLHRKISIVSQEPTLFNCSIE ENIAYGFDGKLNSVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAE SEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVVVISDGQVAEKGTHDELLSQNGVYTALVKRQLQTTKDENQVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 61 | 61 | - | – | |
| MobiDBLite | 1 | 38 | 38 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PIRSF | 11 | 636 | 626 | 1.8E-245 | – | |
| PANTHER | 13 | 630 | 618 | 0.0 | ||
| PANTHER | 13 | 630 | 618 | 0.0 | – | |
| Gene3D | 45 | 377 | 333 | 2.4E-97 | ||
| SUPERFAMILY | 50 | 366 | 317 | 3.66E-74 | ||
| Phobius | 62 | 79 | 18 | - | – | |
| ProSiteProfiles | 63 | 353 | 291 | 56.696 | ||
| Pfam | 63 | 335 | 273 | 1.1E-61 | ||
| CDD | 65 | 361 | 297 | 5.99497E-140 | – | |
| Phobius | 80 | 109 | 30 | - | – | |
| Phobius | 110 | 131 | 22 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 132 | 195 | 64 | - | – | |
| Phobius | 196 | 225 | 30 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 226 | 289 | 64 | - | – | |
| Phobius | 290 | 318 | 29 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 319 | 329 | 11 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 330 | 351 | 22 | - | – | |
| Phobius | 352 | 636 | 285 | - | – | |
| SUPERFAMILY | 380 | 625 | 246 | 4.99E-90 | ||
| Gene3D | 381 | 635 | 255 | 2.5E-94 | – | |
| ProSiteProfiles | 387 | 624 | 238 | 26.617 | ||
| CDD | 387 | 625 | 239 | 7.23317E-133 | – | |
| Pfam | 405 | 555 | 151 | 2.9E-35 | ||
| SMART | 414 | 607 | 194 | 1.4E-17 | ||
| ProSitePatterns | 527 | 541 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0256000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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