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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0315000 |
| Transcript ID | LotjaGi4g1v0315000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT1G02520.1 P-glycoprotein 11; Swiss-Prot: sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11; TrEMBL-Plants: tr|G7JR15|G7JR15_MEDTR ABC transporter B family protein; Found in the gene: LotjaGi4g1v0315000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69189286..69192202) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATAAAGGGATCAGGACAGAAT GCTGCAAATGACACAGACAAGCAAGAAAGTTCAGTGCATTCCGGAAGAATATCAAATCAAAGATCTTTTTCCTCAGCATC TTTAAGCCAAAGGTCATCTGGAGTTGGAAACAGTGGCCATCACTCATTCTCAGCTTCATATGGCATACCCCCAACAGTTG GATTCTTGGAGCCAGTTGGTGGAGAAGCTTCCCCTTCAACAGTTTCTTCGCCACCAGAAGTGCCTCTTTATCGCCTGGCC TATTTAAACAAGCCTGAGATTCCAGTCTTACTGGTAGGGACTATAGCTGCAGTGTTAAATGGAGTAATCTTACCTGTTTT TGGGCTCTTGCTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTGATGAACTCCGCAAAGATTCTAAAGTTTGGGCAC TAGTATTTGTTGGCCTTGGCGTGGCATCGTTAGTAATTTTTCCATGTAGATTCTACTTTTTTGGTGTTGCCGGTGGTAAG TTGATCAAAAGAATCCGGGAAATGTGTTTTGAGAAACTAGTTCACATGGAAGTTAGCTGGTTTGATGAAGCTGAGCATTC AAGCGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCAGTTAGAGGTTTGGTTGGGGATGCACTCGGCTTGCTGG TTCAAAATATTGCTACTGCAATAGCTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCT TTGGTGCCTCTGTTAGGATTAAATGGATATTTTCAGTTGAAGTTCTTGCAAGGGTTCAGTGGAGATTCCAAGGTTTGTTC TCGAGTCTTGACTTCCATTAACCAACCAACTGATATAGTGAATGAATATGAAAATATCTGTGTTTTCAACTTCATGGGAA GTGGAGTTGTGAACCTGAATAAAAGTAATCACTAATCAGATCAATTTCTTAGCACAACTTTTAACATCATACTAAGAAGA AAATTTTCTTGATGACCATGAGTCAATATTGTTACAAGCATGTTCTTGGATTAGCTATATGTTATGAATACTGACAATAT TTTTGCTGGACAGAAATTGTATGAGGAAGCAAGTCAGGTGGCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTT TCTGTGCAGAGGAGAAGGTGATGGAGTTATACCAGGAAAGATGTGAGGGACCAATTAAGACAGGAATAAGGAGAGGGATA GTAAGTGGAGTTAGTTTTGGGATATCATTCTTCGTGCTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCT TGTAGAGGATGGCCAAACAACATTCTCAGATGTTTTCCGTGTAAGTTACTCTCCTAACTTATTCACCATGTCAGACATTC TATCAGTTTTCTCCTCATTGTCACAGTTATTGGTGAATTGTTAATCAACAATCACCATGAGGTTTTGTTCACTTTATTTG AAATCCAAGTGTGAGTGATGGAATCTCAGATTGGTTATGAATGGGACAAATGAAGACTACACAACTGAATAAATCCATAT AACTATTTTTCTTGCATTGATGATTTTGTTGCCTAATTTGCAGGTCTTTTTTGCCCTCAGCATGGCAGCTATAGGAATCT CTCAATCTGGGTCCTTGGCCCCAGATTCAACTAAAGCTAAAAGTGCAGCTGCTTCCATATTTGCTATTCTAGATCGGAAG TCGCAAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAGAAGTAAAGGGAGAAATTGAGTTTAACAATGTCAGTTT CAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATTTTTGCTTGACCATTCACAGTGGCAAGGTAATTTTGTAAT TTGCACATCTTATCCAGTAGACTACTCTATAATATTCATCCTAAAGAAAGTGCTAACAGCTTGATTATATTGATAAAAAT CAGACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTGCGATCTCATTACTACAAAGATTTTATGACCCAGA CTCAGGTCACATCACACTGGATGGAAAAGAAATCCAAACGCTGCAAGTGAAGTGGCTAAGGCAACAGATGGGCCTGGTAA GCCAAGAGCCTGTGCTGTTCAATGAGACCATCAGAGCCAATATTGCATATGGAAAAGGAGGAAATGCAACCGAGGCAGAA ATCATAGCTGCTGCAGAACTGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGAAGGTAAATTGCAGTGTGAACTATCT ACTTAATCTCTCTTAATATTTGTTTTTTAGACACCATATGATATGAATACAGTTCTAAATTCTTGACATATATTATATAT GCAGGGTTATGACACAATAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAAAAGCAAAGAGTGGCAATTGCACGAG CTATAGTGAAGAATCCAAAGATTTTACTATTAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAAAGTGGTTCAG GATGCACTTGACCGTGTCATGGTGGACCGAACCACAATAGTAGTAGCTCATAGATTATCCACTATTAAGGGTGCAGATTT AATTGCAGTAGTTAAGAATGGGGTCATAGCAGAGAAAGGAAAGCATGAAACGTTACTCCGTAAGGGTGGTAACTATGCTT CTTTAGTAGCATTGCACACAAGTGCTTCTTCATCTTAGACTCCCCTTCAGCTTGTTGCAACTTTTATCAGAGTAAAATCA GATGCTTAGGAAATTGATTATTCTCAATGATTAGTCAAGTTTAAATACCACTCTCCAATTGCTTTATTTATTGTAATTTG TAATTTTGTTTTCTTGAAAGAACTAGTGAAATAAAAG
CDS sequence (LotjaGi4g1v0315000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAGTATTTTCTATGAGCCAGCTGATGAACTCCGCAAAGATTCTAAAGTTTGGGCACTAGTATTTGTTGGCCTTGG CGTGGCATCGTTAGTAATTTTTCCATGTAGATTCTACTTTTTTGGTGTTGCCGGTGGTAAGTTGATCAAAAGAATCCGGG AAATGTGTTTTGAGAAACTAGTTCACATGGAAGTTAGCTGGTTTGATGAAGCTGAGCATTCAAGCGGAGCACTTGGAGCA AGGCTCTCTACTGATGCAGCTTCAGTTAGAGGTTTGGTTGGGGATGCACTCGGCTTGCTGGTTCAAAATATTGCTACTGC AATAGCTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTGTTAGGAT TAAATGGATATTTTCAGTTGAAGTTCTTGCAAGGGTTCAGTGGAGATTCCAAGAAATTGTATGAGGAAGCAAGTCAGGTG GCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCAGAGGAGAAGGTGATGGAGTTATACCAGGAAAG ATGTGAGGGACCAATTAAGACAGGAATAAGGAGAGGGATAGTAAGTGGAGTTAGTTTTGGGATATCATTCTTCGTGCTGT ATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGCCAAACAACATTCTCAGATGTTTTCCGT GTCTTTTTTGCCCTCAGCATGGCAGCTATAGGAATCTCTCAATCTGGGTCCTTGGCCCCAGATTCAACTAAAGCTAAAAG TGCAGCTGCTTCCATATTTGCTATTCTAGATCGGAAGTCGCAAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAG AAGTAAAGGGAGAAATTGAGTTTAACAATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATTTT TGCTTGACCATTCACAGTGGCAAGACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTGCGATCTCATTACT ACAAAGATTTTATGACCCAGACTCAGGTCACATCACACTGGATGGAAAAGAAATCCAAACGCTGCAAGTGAAGTGGCTAA GGCAACAGATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGAGACCATCAGAGCCAATATTGCATATGGAAAAGGA GGAAATGCAACCGAGGCAGAAATCATAGCTGCTGCAGAACTGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGAAGGG TTATGACACAATAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAAAAGCAAAGAGTGGCAATTGCACGAGCTATAG TGAAGAATCCAAAGATTTTACTATTAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAAAGTGGTTCAGGATGCA CTTGACCGTGTCATGGTGGACCGAACCACAATAGTAGTAGCTCATAGATTATCCACTATTAAGGGTGCAGATTTAATTGC AGTAGTTAAGAATGGGGTCATAGCAGAGAAAGGAAAGCATGAAACGTTACTCCGTAAGGGTGGTAACTATGCTTCTTTAG TAGCATTGCACACAAGTGCTTCTTCATCTTAG
Protein sequence (LotjaGi4g1v0315000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISIFYEPADELRKDSKVWALVFVGLGVASLVIFPCRFYFFGVAGGKLIKRIREMCFEKLVHMEVSWFDEAEHSSGALGA RLSTDAASVRGLVGDALGLLVQNIATAIAGLVIAFVASWQLALVILALVPLLGLNGYFQLKFLQGFSGDSKKLYEEASQV ANDAVGSIRTVASFCAEEKVMELYQERCEGPIKTGIRRGIVSGVSFGISFFVLYAVYACSFYAGARLVEDGQTTFSDVFR VFFALSMAAIGISQSGSLAPDSTKAKSAAASIFAILDRKSQIDPSDESGMTLEEVKGEIEFNNVSFKYPTRPDVQIFRDF CLTIHSGKTVALVGESGSGKSTAISLLQRFYDPDSGHITLDGKEIQTLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKG GNATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDA LDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHETLLRKGGNYASLVALHTSASSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 541 | 541 | 0.0 | – | |
| Gene3D | 1 | 191 | 191 | 5.4E-61 | ||
| ProSiteProfiles | 1 | 264 | 264 | 45.075 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| CDD | 1 | 282 | 282 | 2.36643E-126 | – | |
| PANTHER | 1 | 541 | 541 | 0.0 | ||
| Pfam | 14 | 247 | 234 | 2.6E-60 | ||
| SUPERFAMILY | 16 | 283 | 268 | 1.57E-57 | ||
| Phobius | 18 | 41 | 24 | - | – | |
| TMHMM | 19 | 41 | 23 | - | – | |
| Phobius | 42 | 95 | 54 | - | – | |
| Phobius | 96 | 115 | 20 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 116 | 120 | 5 | - | – | |
| Phobius | 121 | 138 | 18 | - | – | |
| Phobius | 139 | 199 | 61 | - | – | |
| Gene3D | 195 | 291 | 97 | 1.1E-163 | ||
| Phobius | 200 | 223 | 24 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 224 | 237 | 14 | - | – | |
| Phobius | 238 | 259 | 22 | - | – | |
| Phobius | 260 | 543 | 284 | - | – | |
| SUPERFAMILY | 288 | 536 | 249 | 3.37E-91 | ||
| Gene3D | 292 | 540 | 249 | 1.1E-163 | – | |
| ProSiteProfiles | 299 | 536 | 238 | 24.557 | ||
| CDD | 299 | 534 | 236 | 5.06386E-139 | – | |
| Pfam | 320 | 467 | 148 | 3.0E-36 | ||
| SMART | 326 | 519 | 194 | 2.5E-15 | ||
| ProSitePatterns | 439 | 453 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0315000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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