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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000210
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 228 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 5.978s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1968190.1
n.a. Speckle-type POZ protein-like B [Medicago truncatula] gi|357482619|ref|XP_003611596.1| chr2 28592296 28598963 -
4 domain predictions
1 GO term
Lj2g3v1968330.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g49900-like [Glycine max] gi|356495510|ref|XP_003516620.1| chr2 28659502 28663472 +
4 domain predictions
1 GO term
Lj2g3v2448240.1
n.a. PREDICTED: root phototropism protein 2-like [Cicer arietinum] gi|502129677|ref|XP_004500391.1| chr2 34620750 34623163 +
4 domain predictions
1 GO term
Lj2g3v2926360.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356499261|ref|XP_003518460.1| chr2 38226028 38230243 +
4 domain predictions
1 GO term
Lj2g3v3073980.1
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39563157 39571182 +
4 domain predictions
1 GO term
Lj2g3v3073980.2
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39565751 39571182 +
4 domain predictions
1 GO term
Lj2g3v3339000.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Glycine max] gi|356551632|ref|XP_003544178.1| chr2 42532625 42536142 +
4 domain predictions
1 GO term
Lj3g3v0042020.1
n.a. POZ/BTB containin G-protein 1 isoform 1 [Theobroma cacao] gi|508703909|gb|EOX95805.1| chr3 484528 486703 +
3 domain predictions
1 GO term
Lj3g3v0042050.1
n.a. Kelch-like protein [Medicago truncatula] gi|358346302|ref|XP_003637208.1| chr3 489143 490536 -
4 domain predictions
1 GO term
Lj3g3v0965960.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g04390-like isoform X1 [Cicer arietinum] gi|502089175|ref|XP_004488836.1| chr3 12913759 12921586 -
4 domain predictions
1 GO term
Lj3g3v2364160.1
n.a. POZ/BTB containin G-protein 1 isoform 5 [Theobroma cacao] gi|508703913|gb|EOX95809.1| chr3 29611767 29614791 +
2 domain predictions
1 GO term
Lj3g3v2888420.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Glycine max] gi|356517604|ref|XP_003527477.1| chr3 35764609 35768335 +
3 domain predictions
1 GO term
Lj3g3v3241050.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356520334|ref|XP_003528818.1| chr3 39983559 39985080 +
4 domain predictions
1 GO term
Lj3g3v3241050.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356520334|ref|XP_003528818.1| chr3 39983559 39986633 +
4 domain predictions
1 GO term
Lj3g3v3241060.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356573187|ref|XP_003554745.1| chr3 39988451 39990314 +
4 domain predictions
1 GO term
Lj3g3v3527490.1
n.a. POZ/BTB containin G-protein 1 isoform 5 [Theobroma cacao] gi|508703913|gb|EOX95809.1| chr3 43115959 43117392 -
2 domain predictions
1 GO term
Lj3g3v3688840.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Cicer arietinum] gi|502156968|ref|XP_004510713.1| chr3 44740225 44741652 -
4 domain predictions
1 GO term
Lj4g3v0365690.1
n.a. Root phototropism protein [Medicago truncatula] gi|357476259|ref|XP_003608415.1| chr4 4801876 4805500 +
3 domain predictions
1 GO term
Lj4g3v0758310.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] gi|356563523|ref|XP_003550011.1| chr4 11928783 11933758 +
4 domain predictions
1 GO term
Lj4g3v0770820.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Glycine max] gi|356540639|ref|XP_003538794.1| chr4 12253688 12257973 -
3 domain predictions
1 GO term
Lj4g3v0867530.3
n.a. PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Glycine max] gi|356498468|ref|XP_003518074.1| chr4 13177936 13202595 +
2 domain predictions
1 GO term
Lj4g3v1199760.2
n.a. PREDICTED: BTB/POZ domain-containing protein FBL11-like [Cicer arietinum] gi|502111742|ref|XP_004494153.1| chr4 17553844 17562403 +
4 domain predictions
1 GO term
Lj4g3v1399920.1
n.a. BTB/POZ domain-containing protein [Lotus japonicus] gi|283132373|dbj|BAI63592.1| chr4 22030734 22034259 +
4 domain predictions
1 GO term
Lj4g3v1983390.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g24240-like [Cicer arietinum] gi|502149972|ref|XP_004507731.1| chr4 27559484 27562046 -
2 domain predictions
1 GO term
Lj4g3v2313710.1
n.a. Kelch-like protein diablo [Medicago truncatula] gi|357478787|ref|XP_003609679.1| chr4 32294542 32297173 +
4 domain predictions
1 GO term
Lj4g3v2976850.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g63850-like [Cicer arietinum] gi|502139213|ref|XP_004503685.1| chr4 39384827 39388816 +
2 domain predictions
1 GO term
Lj5g3v0279120.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g30600-like [Glycine max] gi|356553317|ref|XP_003545003.1| chr5 2299980 2308182 -
4 domain predictions
1 GO term
Lj5g3v0279120.2
n.a. Kelch-like protein [Medicago truncatula] gi|357490099|ref|XP_003615337.1| chr5 2299980 2308182 -
4 domain predictions
1 GO term
Lj5g3v0496900.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY1-like [Cicer arietinum] gi|502125127|ref|XP_004498809.1| chr5 4917926 4924852 -
3 domain predictions
1 GO term
Lj5g3v0496900.2
n.a. PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max] gi|356564003|ref|XP_003550246.1| chr5 4919513 4924852 -
3 domain predictions
1 GO term
Lj5g3v0962400.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356500220|ref|XP_003518931.1| chr5 14561733 14565553 +
4 domain predictions
1 GO term
Lj5g3v1003910.1
n.a. PREDICTED: ETO1-like protein 1-like [Glycine max] gi|356500164|ref|XP_003518903.1| chr5 15981419 15986372 +
2 domain predictions
1 GO term
Lj5g3v1473500.2
n.a. PREDICTED: root phototropism protein 3-like [Glycine max] gi|356574935|ref|XP_003555598.1| chr5 21606833 21607654 +
4 domain predictions
1 GO term
Lj5g3v1665200.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Glycine max] gi|356500276|ref|XP_003518959.1| chr5 23771332 23776189 +
3 domain predictions
1 GO term
Lj5g3v1811610.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr5 25911888 25915378 -
4 domain predictions
1 GO term
Lj5g3v2057450.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Cicer arietinum] gi|502119853|ref|XP_004496757.1| chr5 29662923 29671577 +
4 domain predictions
1 GO term
Lj5g3v2099740.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] gi|356536111|ref|XP_003536583.1| chr5 30115193 30121125 +
3 domain predictions
1 GO term
Lj6g3v0528520.1
n.a. transposase [Populus tomentosa] gi|429326652|gb|AFZ78666.1| chr6 5508311 5513375 -
2 domain predictions
1 GO term
Lj6g3v1692500.1
n.a. NPR1-1 protein [Glycine max] gi|351726319|ref|NP_001238658.1| chr6 18835132 18841561 +
4 domain predictions
1 GO term
Lj6g3v1707360.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] gi|356532859|ref|XP_003534987.1| chr6 19315886 19320202 -
3 domain predictions
1 GO term
Lj6g3v1949700.2
n.a. BTB/POZ domain-containing protein [Medicago truncatula] gi|357447197|ref|XP_003593874.1| chr6 22343633 22346335 -
3 domain predictions
1 GO term
Lj6g3v2193630.1
n.a. PREDICTED: root phototropism protein 3-like [Glycine max] gi|356554757|ref|XP_003545709.1| chr6 25422037 25425815 -
3 domain predictions
1 GO term
LotjaGi1g1v0008000.1
n.a. BTB/POZ domain-containing protein; TAIR: AT5G48130.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LUB9|Y5813_ARATH BTB/POZ domain-containing protein At5g48130; TrEMBL-Plants: tr|A0A0B2SQ01|A0A0B2SQ01_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0008000 LjG1.1_chr1 1058630 1062342 -
4 domain predictions
1 GO term
LotjaGi1g1v0011800.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G55760.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760; TrEMBL-Plants: tr|A0A151U2K6|A0A151U2K6_CAJCA Protein maternal effect lethal 26; Found in the gene: LotjaGi1g1v0011800 LjG1.1_chr1 1458941 1461500 -
4 domain predictions
1 GO term
LotjaGi1g1v0045800.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q0JJ01|NPR2_ORYSJ BTB/POZ domain and ankyrin repeat-containing protein NPR2; TrEMBL-Plants: tr|I1M705|I1M705_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045800 LjG1.1_chr1 6271139 6280773 -
4 domain predictions
1 GO term
LotjaGi1g1v0046100_LC.1
n.a. BTB/POZ domain and ankyrin repeat-containing protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|I1JJ13|I1JJ13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046100_LC LjG1.1_chr1 6316459 6318160 -
4 domain predictions
1 GO term
LotjaGi1g1v0059200.1
n.a. BTB-POZ and MATH domain protein; TAIR: AT3G03740.1 BTB-POZ and MATH domain 4; Swiss-Prot: sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4; TrEMBL-Plants: tr|K7KB30|K7KB30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059200 LjG1.1_chr1 8289166 8294132 -
4 domain predictions
1 GO term
LotjaGi1g1v0104800.1
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|G7K0V9|G7K0V9_MEDTR Root phototropism-like protein; Found in the gene: LotjaGi1g1v0104800 LjG1.1_chr1 16187382 16191953 +
4 domain predictions
1 GO term
LotjaGi1g1v0158600.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I3T1G3|I3T1G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158600 LjG1.1_chr1 29403874 29407465 +
4 domain predictions
1 GO term
LotjaGi1g1v0158600.2
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I3T1G3|I3T1G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158600 LjG1.1_chr1 29403874 29407465 +
4 domain predictions
1 GO term