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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002022
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 62 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 6.135s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0358500.2
n.a. Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|I3T7N6|I3T7N6_LOTJA Pectate lyase; Found in the gene: LotjaGi5g1v0358500 LjG1.1_chr5 67308866 67311469 -
3 domain predictions
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LotjaGi6g1v0014200.1
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A0R0E8X8|A0A0R0E8X8_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200 LjG1.1_chr6 2566826 2573039 -
3 domain predictions
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LotjaGi6g1v0014200.2
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|Q94FT5|Q94FT5_FRAAN Pectate lyase; Found in the gene: LotjaGi6g1v0014200 LjG1.1_chr6 2568185 2570189 -
3 domain predictions
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LotjaGi6g1v0014200.3
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200 LjG1.1_chr6 2568185 2570226 -
3 domain predictions
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LotjaGi6g1v0014200.4
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200 LjG1.1_chr6 2568185 2571350 -
3 domain predictions
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LotjaGi6g1v0014200.5
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|I1LAJ4|I1LAJ4_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200 LjG1.1_chr6 2568185 2571356 -
3 domain predictions
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LotjaGi6g1v0096900.1
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900 LjG1.1_chr6 21008454 21011906 -
3 domain predictions
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LotjaGi6g1v0096900.2
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900 LjG1.1_chr6 21008833 21010761 -
3 domain predictions
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LotjaGi6g1v0097000.1
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000 LjG1.1_chr6 21034177 21037132 -
3 domain predictions
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LotjaGi6g1v0097000.2
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000 LjG1.1_chr6 21034650 21036903 -
3 domain predictions
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LotjaGi6g1v0097000.3
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|D3IZZ2|D3IZZ2_GOSRA Pectate lyase; Found in the gene: LotjaGi6g1v0097000 LjG1.1_chr6 21034650 21036903 -
2 domain predictions
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LotjaGi6g1v0292100.1
n.a. Pectate lyase; TAIR: AT4G22080.1 root hair specific 14; Swiss-Prot: sp|O65456|PLY16_ARATH Probable pectate lyase 16; TrEMBL-Plants: tr|A0A0B2S814|A0A0B2S814_GLYSO Pectate lyase; Found in the gene: LotjaGi6g1v0292100 LjG1.1_chr6 61020185 61023637 +
3 domain predictions
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