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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004776
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We have found 75 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 7.758s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0256600.2
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|M9WUH6|M9WUH6_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0256600 LjG1.1_chr2 72289474 72291808 -
2 domain predictions
2 GO terms
LotjaGi2g1v0256600.3
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|M9WUH6|M9WUH6_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0256600 LjG1.1_chr2 72289595 72291808 -
2 domain predictions
2 GO terms
LotjaGi2g1v0273000.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|G7JZC9|G7JZC9_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi2g1v0273000 LjG1.1_chr2 74388059 74390875 -
2 domain predictions
2 GO terms
LotjaGi2g1v0273000.2
n.a. Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|G7JZC9|G7JZC9_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi2g1v0273000 LjG1.1_chr2 74388455 74389810 -
2 domain predictions
2 GO terms
LotjaGi2g1v0352100.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G20925.1 Auxin efflux carrier family protein; Swiss-Prot: sp|F4HWB6|PILS1_ARATH Protein PIN-LIKES 1; TrEMBL-Plants: tr|A0A151SKJ5|A0A151SKJ5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0352100 LjG1.1_chr2 82812788 82821949 -
2 domain predictions
2 GO terms
LotjaGi2g1v0352100.2
n.a. Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|G7K2M6|G7K2M6_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi2g1v0352100 LjG1.1_chr2 82812791 82822529 -
2 domain predictions
2 GO terms
LotjaGi2g1v0353700.1
n.a. Auxin efflux carrier family protein; TAIR: AT5G65980.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9FKY4|PILS7_ARATH Protein PIN-LIKES 7; TrEMBL-Plants: tr|I1J8B4|I1J8B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0353700 LjG1.1_chr2 83017342 83022652 +
2 domain predictions
2 GO terms
LotjaGi2g1v0353700.2
n.a. Auxin efflux carrier family protein; TAIR: AT5G65980.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9FKY4|PILS7_ARATH Protein PIN-LIKES 7; TrEMBL-Plants: tr|I1J8B4|I1J8B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0353700 LjG1.1_chr2 83017911 83022556 +
2 domain predictions
2 GO terms
LotjaGi3g1v0065800.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|A0A072TKW2|A0A072TKW2_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi3g1v0065800 LjG1.1_chr3 6976376 6981155 -
2 domain predictions
2 GO terms
LotjaGi3g1v0065900.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G20925.1 Auxin efflux carrier family protein; Swiss-Prot: sp|F4HWB6|PILS1_ARATH Protein PIN-LIKES 1; TrEMBL-Plants: tr|A0A151RX36|A0A151RX36_CAJCA Putative transporter C5D6.04; Found in the gene: LotjaGi3g1v0065900 LjG1.1_chr3 6982650 6998483 -
2 domain predictions
2 GO terms
LotjaGi3g1v0065900.2
n.a. Auxin efflux carrier family protein; TAIR: AT1G20925.1 Auxin efflux carrier family protein; Swiss-Prot: sp|F4HWB6|PILS1_ARATH Protein PIN-LIKES 1; TrEMBL-Plants: tr|A0A151RX36|A0A151RX36_CAJCA Putative transporter C5D6.04; Found in the gene: LotjaGi3g1v0065900 LjG1.1_chr3 6982855 6992235 -
2 domain predictions
2 GO terms
LotjaGi4g1v0078400.1
n.a. Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|I1ND75|I1ND75_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 LjG1.1_chr4 10226446 10231532 +
2 domain predictions
2 GO terms
LotjaGi4g1v0078400.2
n.a. Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|I1ND75|I1ND75_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 LjG1.1_chr4 10226994 10230638 +
2 domain predictions
2 GO terms
LotjaGi4g1v0078400.3
n.a. Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|I1ND75|I1ND75_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 LjG1.1_chr4 10226994 10230638 +
2 domain predictions
2 GO terms
LotjaGi4g1v0078400.4
n.a. Auxin efflux carrier component; TAIR: AT2G01420.2 Auxin efflux carrier family protein; Swiss-Prot: sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4; TrEMBL-Plants: tr|Q8GV76|Q8GV76_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 LjG1.1_chr4 10228769 10230638 +
2 domain predictions
2 GO terms
LotjaGi4g1v0138300.1
n.a. Auxin efflux carrier family protein; TAIR: AT5G65980.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9FKY4|PILS7_ARATH Protein PIN-LIKES 7; TrEMBL-Plants: tr|K7LEW8|K7LEW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0138300 LjG1.1_chr4 20555700 20560660 -
2 domain predictions
2 GO terms
LotjaGi4g1v0140700.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|K7MGQ0|K7MGQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0140700 LjG1.1_chr4 21286074 21315584 +
2 domain predictions
2 GO terms
LotjaGi4g1v0140700.2
n.a. Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|A0A067FRQ6|A0A067FRQ6_CITSI Uncharacterized protein; Found in the gene: LotjaGi4g1v0140700 LjG1.1_chr4 21286074 21315584 +
2 domain predictions
2 GO terms
LotjaGi4g1v0140900.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|G7L7X2|G7L7X2_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi4g1v0140900 LjG1.1_chr4 21372295 21377947 +
2 domain predictions
2 GO terms
LotjaGi4g1v0307500.1
n.a. Auxin efflux carrier component; TAIR: AT5G57090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2; TrEMBL-Plants: tr|I1LVK8|I1LVK8_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0307500 LjG1.1_chr4 68324617 68328699 -
2 domain predictions
2 GO terms
LotjaGi4g1v0464500.1
n.a. Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1; TrEMBL-Plants: tr|I3T0I6|I3T0I6_LOTJA Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0464500 LjG1.1_chr4 83453800 83457148 +
2 domain predictions
2 GO terms
LotjaGi5g1v0187300.1
n.a. Auxin efflux carrier family protein, putative; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|K7LKA4|K7LKA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0187300 LjG1.1_chr5 47509539 47514240 -
2 domain predictions
2 GO terms
LotjaGi5g1v0330800.1
n.a. Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|I1N7B8|I1N7B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0330800 LjG1.1_chr5 64800553 64802993 +
2 domain predictions
2 GO terms
LotjaGi5g1v0330800.2
n.a. Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|I1N7B8|I1N7B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0330800 LjG1.1_chr5 64800553 64803094 +
2 domain predictions
2 GO terms
LotjaGi5g1v0330800.3
n.a. Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|I1N7B8|I1N7B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0330800 LjG1.1_chr5 64801262 64802930 +
2 domain predictions
2 GO terms