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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 6 of 18 with 50 rows per page. This search has taken 5.450s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v3374660.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
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Lj3g3v3374660.2
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
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Lj3g3v3374660.3
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
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Lj3g3v3464500.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] gi|356544882|ref|XP_003540876.1| chr3 42253036 42262482 -
2 domain predictions
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Lj3g3v3486850.1
n.a. PREDICTED: probable disease resistance RPP8-like protein 2-like [Cicer arietinum] gi|502144957|ref|XP_004505810.1| chr3 42459311 42460134 -
2 domain predictions
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Lj3g3v3513490.1
n.a. PREDICTED: serine/threonine-protein kinase sepA-like [Cicer arietinum] gi|502144705|ref|XP_004505722.1| chr3 42737678 42772612 +
2 domain predictions
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Lj3g3v3513490.2
n.a. PREDICTED: serine/threonine-protein kinase sepA-like [Cicer arietinum] gi|502144705|ref|XP_004505722.1| chr3 42737678 42771256 +
2 domain predictions
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Lj3g3v3579360.1
n.a. PREDICTED: beta-adaptin-like protein B-like [Cicer arietinum] gi|502144336|ref|XP_004505660.1| chr3 43470718 43478699 +
2 domain predictions
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Lj3g3v3579360.2
n.a. PREDICTED: beta-adaptin-like protein B-like [Cicer arietinum] gi|502144336|ref|XP_004505660.1| chr3 43470951 43478699 +
2 domain predictions
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Lj3g3v3627880.1
n.a. PREDICTED: exportin-1-like isoform 1 [Glycine max] gi|356538463|ref|XP_003537723.1| chr3 43757984 43770143 -
2 domain predictions
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Lj3g3v3628910.1
n.a. PREDICTED: exportin-1-like isoform 1 [Glycine max] gi|356538463|ref|XP_003537723.1| chr3 43789065 43800927 -
2 domain predictions
 –
Lj3g3v3639440.1
n.a. Impaired sucrose induction 1-like protein [Medicago truncatula] gi|357474329|ref|XP_003607449.1| chr3 44110875 44112404 +
2 domain predictions
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Lj3g3v3752290.1
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45434486 45453443 -
2 domain predictions
 –
Lj3g3v3752290.2
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45434486 45453443 -
2 domain predictions
 –
Lj3g3v3752290.3
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45435657 45453443 -
2 domain predictions
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Lj4g3v0014190.1
n.a. PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max] gi|356563692|ref|XP_003550095.1| chr4 175710 186994 +
2 domain predictions
 –
Lj4g3v0014190.2
n.a. PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max] gi|356563692|ref|XP_003550095.1| chr4 178135 186994 +
2 domain predictions
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Lj4g3v0099350.2
n.a. PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] gi|356564452|ref|XP_003550468.1| chr4 892605 905501 -
2 domain predictions
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Lj4g3v0119980.1
n.a. Mo25 family protein [Medicago truncatula] gi|357480557|ref|XP_003610564.1| chr4 1154955 1159339 -
2 domain predictions
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Lj4g3v0153910.1
n.a. PREDICTED: abnormal spindle-like microcephaly-associated protein homolog isoform X3 [Cicer arietinum] gi|502149885|ref|XP_004507699.1| chr4 1808643 1817730 -
2 domain predictions
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Lj4g3v0153950.1
n.a. Calcium-independent phospholipase A2-gamma [Medicago truncatula] gi|357480239|ref|XP_003610405.1| chr4 1829379 1837380 -
2 domain predictions
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Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
2 domain predictions
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Lj4g3v0244080.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ataxin-10-like [Glycine max] gi|356530187|ref|XP_003533665.1| chr4 2952050 2954131 -
2 domain predictions
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Lj4g3v0620070.1
n.a. PREDICTED: U-box domain-containing protein 25-like [Glycine max] gi|356499749|ref|XP_003518699.1| chr4 9449677 9453109 +
2 domain predictions
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Lj4g3v0911410.1
n.a. V-type proton ATPase subunit H [Medicago truncatula] gi|357518453|ref|XP_003629515.1| chr4 13584671 13591032 +
2 domain predictions
 –
Lj4g3v0913480.1
n.a. V-type proton ATPase subunit H [Medicago truncatula] gi|357518453|ref|XP_003629515.1| chr4 13612664 13617160 -
2 domain predictions
 –
Lj4g3v0913490.1
n.a. PREDICTED: V-type proton ATPase subunit H-like isoform X1 [Cicer arietinum] gi|502153136|ref|XP_004509230.1| chr4 13617155 13618886 -
2 domain predictions
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Lj4g3v1037720.1
n.a. TPA_inf: ARO1-like protein 1 [Lotus japonicus] gi|215598285|tpg|DAA06353.1| chr4 14878156 14880853 +
2 domain predictions
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Lj4g3v1288470.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Cicer arietinum] gi|502160109|ref|XP_004511636.1| chr4 19050054 19059265 +
2 domain predictions
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Lj4g3v1440720.1
n.a. Armadillo repeat only 4 [Theobroma cacao] gi|508773578|gb|EOY20834.1| chr4 22321503 22323753 +
2 domain predictions
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Lj4g3v1440730.1
n.a. n.a. chr4 22321607 22323718 -
2 domain predictions
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Lj4g3v1534900.1
n.a. PREDICTED: U-box domain-containing protein 19-like [Glycine max] gi|356565018|ref|XP_003550742.1| chr4 22901677 22904101 -
2 domain predictions
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Lj4g3v1562770.1
n.a. PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cicer arietinum] gi|502152205|ref|XP_004508815.1| chr4 23303800 23306224 +
2 domain predictions
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Lj4g3v1586960.1
n.a. PREDICTED: transportin-3-like isoform 1 [Glycine max] gi|356562787|ref|XP_003549650.1| chr4 23370851 23379627 -
2 domain predictions
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Lj4g3v1586960.2
n.a. PREDICTED: transportin-3-like isoform 1 [Glycine max] gi|356562787|ref|XP_003549650.1| chr4 23370851 23381591 -
2 domain predictions
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Lj4g3v1788170.1
n.a. PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max] gi|356563087|ref|XP_003549797.1| chr4 25381691 25398241 +
2 domain predictions
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Lj4g3v1881820.1
n.a. Telomere-associated protein RIF1 [Medicago truncatula] gi|357478237|ref|XP_003609404.1| chr4 26707285 26713250 -
2 domain predictions
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Lj4g3v1920940.1
n.a. Uncharacterized protein TCM_038176 [Theobroma cacao] gi|508783948|gb|EOY31204.1| chr4 27070291 27072663 +
2 domain predictions
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Lj4g3v2122820.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 6, chloroplastic-like [Glycine max] gi|356550736|ref|XP_003543740.1| chr4 29221819 29227601 -
2 domain predictions
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Lj4g3v2140190.1
n.a. Lysine-specific demethylase NO66 [Medicago truncatula] gi|357479435|ref|XP_003610003.1| chr4 29640142 29649093 +
2 domain predictions
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Lj4g3v2214850.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502115621|ref|XP_004495248.1| chr4 30401237 30410281 -
2 domain predictions
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Lj4g3v2215540.1
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like [Cicer arietinum] gi|502150646|ref|XP_004508055.1| chr4 30756956 30773367 -
2 domain predictions
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Lj4g3v2215540.2
n.a. PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like [Cicer arietinum] gi|502150646|ref|XP_004508055.1| chr4 30756956 30774550 -
2 domain predictions
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Lj4g3v2250230.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508714972|gb|EOY06869.1| chr4 31094018 31103379 +
2 domain predictions
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Lj4g3v2283960.1
n.a. PREDICTED: importin subunit alpha-1-like [Cicer arietinum] gi|502084941|ref|XP_004487798.1| chr4 31765959 31770204 +
2 domain predictions
 –
Lj4g3v2289240.1
n.a. PREDICTED: pumilio homolog 24-like isoform 1 [Glycine max] gi|356564394|ref|XP_003550439.1| chr4 31847318 31851944 +
2 domain predictions
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Lj4g3v2577120.1
n.a. Ran-binding protein [Medicago truncatula] gi|357508693|ref|XP_003624635.1| chr4 34525488 34528570 +
2 domain predictions
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Lj4g3v2604270.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502140730|ref|XP_004504314.1| chr4 35157273 35165829 +
2 domain predictions
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Lj4g3v2742790.1
n.a. PREDICTED: U-box domain-containing protein 25-like [Glycine max] gi|356516368|ref|XP_003526867.1| chr4 36826234 36827433 +
2 domain predictions
 –
Lj4g3v2803800.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357519575|ref|XP_003630076.1| chr4 37521402 37525626 +
2 domain predictions
 –