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Lj4g3v2604270.1

Overview

Field Value
Gene ID Lj4g3v2604270
Transcript ID Lj4g3v2604270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502140730|ref|XP_004504314.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10527
1 1108 1108 0 –
PANTHER
PTHR10527:SF29
1 1108 1108 0 –
Gene3D
G3DSA:1.25.10.10
20 557 538 6.70E-136
IPR011989
SUPERFAMILY
SSF48371
20 652 633 2.62E-131
IPR016024
SMART
SM00913
42 114 73 0.0045
IPR001494
SMART
SM01349
369 606 238 7.70E-13 –
Pfam
PF13646
385 485 101 2.70E-08 –
ProSiteProfiles
PS50077
420 458 39 9.225
IPR021133
CDD
cd00020
420 529 110 4.33E-05 –
Gene3D
G3DSA:1.25.10.10
605 820 216 6.70E-136
IPR011989
SUPERFAMILY
SSF48371
689 822 134 2.62E-131
IPR016024
SUPERFAMILY
SSF48371
689 1090 402 1.12E-42
IPR016024
Gene3D
G3DSA:1.25.10.10
821 1115 295 9.00E-34
IPR011989
Coils
Coil
836 856 21 – –
ProSiteProfiles
PS50077
925 957 33 8.775
IPR021133
Pfam
PF02985
926 953 28 6.80E-06
IPR000357

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj4g3v2604270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2604270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.