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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011991
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 324 results. Now displaying 4 of 7 with 50 rows per page. This search has taken 6.246s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2172920.1
n.a. PREDICTED: transcription factor E2FC-like isoform X1 [Cicer arietinum] gi|502131315|ref|XP_004500945.1| chr1 26212662 26214082 -
2 domain predictions
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Lj1g3v2217460.1
n.a. La-related protein 1B [Medicago truncatula] gi|357467051|ref|XP_003603810.1| chr1 26396826 26399933 -
3 domain predictions
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Lj1g3v2249530.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3-like [Glycine max] gi|356517716|ref|XP_003527532.1| chr1 26438346 26442149 -
3 domain predictions
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Lj1g3v2267190.1
n.a. Regulatory protein recX [Medicago truncatula] gi|357495195|ref|XP_003617886.1| chr1 26649190 26654232 +
2 domain predictions
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Lj1g3v2415470.1
n.a. TIR-NBS-LRR RCT1-like resistance protein [Medicago sativa] gi|193584702|gb|ACF19651.1| chr1 28332231 28337470 +
2 domain predictions
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Lj1g3v2842390.1
n.a. Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|357507871|ref|XP_003624224.1| chr1 32409490 32422820 -
2 domain predictions
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Lj1g3v2842390.2
n.a. Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|357507871|ref|XP_003624224.1| chr1 32410073 32422820 -
2 domain predictions
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Lj1g3v2994540.1
n.a. O-methyltransferase [Medicago truncatula] gi|357502091|ref|XP_003621334.1| chr1 34078801 34080919 -
3 domain predictions
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Lj1g3v3023790.1
n.a. RecName: Full=Isoflavone 7-O-methyltransferase; AltName: Full=Daidzein 7-O-methyltransferasegi|28804594|dbj|BAC58012.1| S-adenosyl-L-methionine: daidzein 7-0-methyltransferase [Glycyrrhiza echinata] gi|75146882|sp|Q84KK5.1|D7OMT_GLYEC chr1 34507624 34509637 -
3 domain predictions
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Lj1g3v3103950.1
n.a. PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Glycine max] gi|356567166|ref|XP_003551792.1| chr1 35318725 35320326 +
3 domain predictions
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Lj1g3v3194700.1
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486563|ref|XP_003613569.1| chr1 36312398 36317332 +
2 domain predictions
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Lj1g3v3330190.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] gi|356509511|ref|XP_003523491.1| chr1 37958535 37962830 -
2 domain predictions
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Lj1g3v3404340.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max] gi|356517915|ref|XP_003527631.1| chr1 39229070 39231969 -
2 domain predictions
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Lj1g3v3445320.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max] gi|356523153|ref|XP_003530206.1| chr1 39989438 40003778 -
2 domain predictions
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Lj1g3v3642040.2
n.a. functional candidate resistance protein KR1 [Glycine max] gi|351722733|ref|NP_001237766.1| chr1 41923710 41926609 +
2 domain predictions
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Lj1g3v3833910.1
n.a. PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max] gi|356511828|ref|XP_003524624.1| chr1 43478764 43480975 -
3 domain predictions
 –
Lj1g3v3833910.2
n.a. PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max] gi|356511828|ref|XP_003524624.1| chr1 43478764 43484388 -
3 domain predictions
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Lj1g3v3833930.1
n.a. Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|357503841|ref|XP_003622209.1| chr1 43489438 43500648 -
2 domain predictions
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Lj1g3v3833930.2
n.a. PREDICTED: sister chromatid cohesion 1 protein 2-like isoform X2 [Cicer arietinum] gi|502165342|ref|XP_004513535.1| chr1 43489438 43497969 -
2 domain predictions
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Lj1g3v3947020.1
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr1 46203538 46206257 -
2 domain predictions
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Lj1g3v3947020.2
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr1 46203538 46207937 -
2 domain predictions
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Lj1g3v4241070.1
n.a. PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3-like [Cicer arietinum] gi|502108702|ref|XP_004493479.1| chr1 50058751 50062558 +
3 domain predictions
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Lj1g3v4591010.1
n.a. PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X2 [Cicer arietinum] gi|502111209|ref|XP_004493986.1| chr1 54913688 54918230 +
2 domain predictions
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Lj1g3v4763830.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356524672|ref|XP_003530952.1| chr1 57166257 57170553 +
3 domain predictions
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Lj1g3v4763830.2
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356512984|ref|XP_003525194.1| chr1 57166257 57170553 +
3 domain predictions
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Lj1g3v4916290.1
n.a. PREDICTED: cullin-1-like [Cicer arietinum] gi|502112494|ref|XP_004494349.1| chr1 59509970 59512090 +
3 domain predictions
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Lj1g3v5060810.2
n.a. PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max] gi|356573271|ref|XP_003554786.1| chr1 61918023 61920668 -
3 domain predictions
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Lj1g3v5062760.1
n.a. PREDICTED: la-related protein 7-like [Cucumis sativus] gi|449492647|ref|XP_004159060.1| chr1 62259172 62266781 -
3 domain predictions
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Lj2g3v0582820.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502171572|ref|XP_004515062.1| chr2 7960615 7969284 +
2 domain predictions
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Lj2g3v0620850.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
2 domain predictions
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Lj2g3v0620850.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
2 domain predictions
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Lj2g3v0620850.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr2 8351378 8354973 -
2 domain predictions
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Lj2g3v0620870.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr2 8357665 8365409 -
3 domain predictions
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Lj2g3v0634890.1
n.a. Disease resistance-like protein [Medicago truncatula] gi|357499675|ref|XP_003620126.1| chr2 9450149 9453460 +
2 domain predictions
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Lj2g3v0634920.2
n.a. Disease resistance-like protein GS3-1 [Medicago truncatula] gi|357499385|ref|XP_003619981.1| chr2 9466625 9469368 +
2 domain predictions
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Lj2g3v0634990.1
n.a. Resistance protein [Medicago truncatula] gi|357499581|ref|XP_003620079.1| chr2 9506903 9509731 +
2 domain predictions
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Lj2g3v0634990.3
n.a. Resistance protein [Medicago truncatula] gi|357499581|ref|XP_003620079.1| chr2 9506903 9509731 +
2 domain predictions
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Lj2g3v0635030.2
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486563|ref|XP_003613569.1| chr2 9513631 9517652 +
2 domain predictions
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Lj2g3v0636480.1
n.a. PREDICTED: heat stress transcription factor B-2b-like [Cicer arietinum] gi|502175341|ref|XP_004515711.1| chr2 10137846 10138484 -
3 domain predictions
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Lj2g3v0677970.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr2 10862247 10864542 -
3 domain predictions
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Lj2g3v0743120.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] gi|356529585|ref|XP_003533370.1| chr2 11760503 11763394 -
2 domain predictions
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Lj2g3v1056970.1
n.a. PREDICTED: cullin-3A-like [Glycine max] gi|356572514|ref|XP_003554413.1| chr2 16716927 16720538 +
3 domain predictions
 –
Lj2g3v1102930.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Glycine max] gi|356534937|ref|XP_003536007.1| chr2 17744268 17748675 +
2 domain predictions
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Lj2g3v1155640.1
n.a. PREDICTED: homologous-pairing protein 2 homolog [Cicer arietinum] gi|502168940|ref|XP_004514499.1| chr2 18325875 18327767 -
3 domain predictions
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Lj2g3v1280050.1
n.a. PREDICTED: cullin-3A-like [Cicer arietinum] gi|502093740|ref|XP_004490037.1| chr2 20579790 20584421 -
2 domain predictions
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Lj2g3v1352610.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497814|ref|XP_003517752.1| chr2 21332419 21334847 +
2 domain predictions
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Lj2g3v1353630.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497814|ref|XP_003517752.1| chr2 21347549 21349807 -
2 domain predictions
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Lj2g3v1510860.1
n.a. Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357484837|ref|XP_003612706.1| chr2 24000001 24002410 -
2 domain predictions
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Lj2g3v1510860.2
n.a. Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357484837|ref|XP_003612706.1| chr2 24000001 24002387 -
3 domain predictions
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Lj2g3v1533010.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Cicer arietinum] gi|502162298|ref|XP_004512457.1| chr2 24048902 24053335 -
2 domain predictions
 –