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Lj2g3v0677970.1

Overview

Field Value
Gene ID Lj2g3v0677970
Transcript ID Lj2g3v0677970.1
Lotus japonicus genome version MG20 v3.0
Description HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 41 41 – –
PANTHER
PTHR11467
7 346 340 1.60E-94 –
PANTHER
PTHR11467:SF33
7 346 340 1.60E-94 –
PRINTS
PR00624
27 48 22 7.80E-05
IPR005819
SUPERFAMILY
SSF46785
37 112 76 9.98E-22
IPR011991
Gene3D
G3DSA:1.10.10.10
37 109 73 1.60E-21
IPR011991
SMART
SM00526
38 104 67 1.70E-28
IPR005818
CDD
cd00073
38 108 71 5.59E-16 –
ProSiteProfiles
PS51504
40 109 70 30.272
IPR005818
Pfam
PF00538
41 102 62 2.40E-14
IPR005818
PRINTS
PR00624
54 71 18 7.80E-05
IPR005819
MobiDBLite
mobidb-lite
109 238 130 – –
PRINTS
PR00624
129 143 15 7.80E-05
IPR005819
SMART
SM00384
134 146 13 15
IPR017956
PRINTS
PR00929
134 144 11 2.40E-08
IPR017956
PRINTS
PR00929
179 190 12 2.40E-08
IPR017956
SMART
SM00384
181 193 13 0.67
IPR017956
PRINTS
PR00929
225 235 11 2.40E-08
IPR017956
SMART
SM00384
227 239 13 15
IPR017956

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v0677970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0677970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.