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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017853
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 769 results. Now displaying 7 of 16 with 50 rows per page. This search has taken 6.440s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1600680.3
n.a. PREDICTED: probable beta-D-xylosidase 2-like [Glycine max] gi|356501877|ref|XP_003519750.1| chr5 23127739 23151656 +
2 domain predictions
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Lj5g3v1698870.1
n.a. PREDICTED: pullulanase 1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502118156|ref|XP_004496127.1| chr5 24455122 24467633 +
2 domain predictions
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Lj5g3v1961260.1
n.a. Chitinase [Medicago truncatula] gi|357443753|ref|XP_003592154.1| chr5 27765204 27766873 +
2 domain predictions
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Lj5g3v1962290.1
n.a. PREDICTED: acidic endochitinase-like [Glycine max] gi|356535818|ref|XP_003536440.1| chr5 27772580 27773640 +
2 domain predictions
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Lj5g3v2099500.1
n.a. PREDICTED: endo-1,4-beta-xylanase A-like [Cicer arietinum] gi|502120176|ref|XP_004496873.1| chr5 30014449 30023313 -
2 domain predictions
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Lj5g3v2099500.2
n.a. Endo-1,4-beta-xylanase A [Medicago truncatula] gi|357444483|ref|XP_003592519.1| chr5 30019686 30023313 -
2 domain predictions
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Lj5g3v2099530.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable beta-D-xylosidase 5-like [Glycine max] gi|356574315|ref|XP_003555294.1| chr5 30033049 30036686 -
2 domain predictions
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Lj5g3v2288510.1
n.a. n.a. chr5 33216165 33235258 -
2 domain predictions
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Lj6g3v0423710.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 2-like [Glycine max] gi|356539822|ref|XP_003538392.1| chr6 3950719 3954153 +
2 domain predictions
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Lj6g3v0485180.1
n.a. beta-1,3-glucanase [Arachis hypogaea] gi|431983623|gb|AGA95870.1| chr6 4831125 4832452 +
2 domain predictions
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Lj6g3v0574490.1
n.a. Alpha-galactosidase [Medicago truncatula] gi|357463235|ref|XP_003601899.1| chr6 5708230 5708881 +
2 domain predictions
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Lj6g3v0574710.1
n.a. PREDICTED: alpha-galactosidase 1-like [Cicer arietinum] gi|502135602|ref|XP_004502389.1| chr6 5719976 5723892 -
2 domain predictions
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Lj6g3v0607240.1
n.a. PREDICTED: lysosomal beta glucosidase-like [Cicer arietinum] gi|502129232|ref|XP_004500232.1| chr6 6028731 6033816 -
2 domain predictions
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Lj6g3v1078650.1
n.a. PREDICTED: acidic mammalian chitinase-like [Cicer arietinum] gi|502131776|ref|XP_004501097.1| chr6 12960356 12961885 +
2 domain predictions
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Lj6g3v1078660.1
n.a. n.a. chr6 12960356 12965800 -
2 domain predictions
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Lj6g3v1093320.1
n.a. PREDICTED: heparanase-like protein 3-like [Cicer arietinum] gi|502087386|ref|XP_004488517.1| chr6 13325594 13328666 +
2 domain predictions
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Lj6g3v1538130.1
n.a. PREDICTED: beta-D-xylosidase 1-like [Cicer arietinum] gi|502084904|ref|XP_004487789.1| chr6 17686480 17692101 -
2 domain predictions
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Lj6g3v1618330.1
n.a. PREDICTED: alpha-glucosidase-like [Glycine max] gi|356555934|ref|XP_003546284.1| chr6 18244829 18247979 +
2 domain predictions
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Lj6g3v1618370.1
n.a. PREDICTED: alpha-glucosidase-like isoform X1 [Cicer arietinum] gi|502080201|ref|XP_004486491.1| chr6 18252343 18256275 +
2 domain predictions
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Lj6g3v1706130.1
n.a. PREDICTED: LOW QUALITY PROTEIN: glucan endo-1,3-beta-glucosidase 5-like [Glycine max] gi|356555785|ref|XP_003546210.1| chr6 19261238 19263063 +
2 domain predictions
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Lj6g3v1706140.1
n.a. n.a. chr6 19261238 19264548 -
2 domain predictions
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Lj6g3v1801980.1
n.a. PREDICTED: lysosomal beta glucosidase-like [Glycine max] gi|356560373|ref|XP_003548467.1| chr6 20169005 20174586 -
2 domain predictions
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Lj6g3v1801980.2
n.a. PREDICTED: lysosomal beta glucosidase-like [Glycine max] gi|356560373|ref|XP_003548467.1| chr6 20169223 20174882 -
2 domain predictions
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Lj6g3v1801980.3
n.a. PREDICTED: lysosomal beta glucosidase-like [Glycine max] gi|356560373|ref|XP_003548467.1| chr6 20169223 20174882 -
2 domain predictions
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Lj6g3v1859510.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 1-like [Glycine max] gi|356563059|ref|XP_003549783.1| chr6 20386503 20389741 -
2 domain predictions
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Lj6g3v1879940.1
n.a. PREDICTED: beta-glucosidase 46-like [Glycine max] gi|356521971|ref|XP_003529623.1| chr6 20606100 20616765 -
2 domain predictions
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Lj6g3v1879970.1
n.a. PREDICTED: beta-glucosidase 47-like [Glycine max] gi|356557899|ref|XP_003547247.1| chr6 20633621 20636985 -
2 domain predictions
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Lj6g3v1918250.1
n.a. PREDICTED: inactive beta-amylase 9-like [Glycine max] gi|356549058|ref|XP_003542915.1| chr6 21741831 21744845 -
2 domain predictions
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Lj6g3v1946210.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Cicer arietinum] gi|502078674|ref|XP_004486020.1| chr6 22116436 22118909 -
2 domain predictions
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Lj6g3v2218790.1
n.a. PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Glycine max] gi|356558612|ref|XP_003547598.1| chr6 25884956 25889195 +
2 domain predictions
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LotjaGi1g1v0011600.3
n.a. Alkaline alpha-galactosidase seed imbibition protein; TAIR: AT1G55740.1 seed imbibition 1; Swiss-Prot: sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1; TrEMBL-Plants: tr|G7K4U6|G7K4U6_MEDTR Galactinol-raffinose galactosyltransferase; Found in the gene: LotjaGi1g1v0011600 LjG1.1_chr1 1418811 1423304 -
2 domain predictions
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LotjaGi1g1v0011600.4
n.a. Alkaline alpha-galactosidase seed imbibition protein; TAIR: AT1G55740.1 seed imbibition 1; Swiss-Prot: sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1; TrEMBL-Plants: tr|G7K4U6|G7K4U6_MEDTR Galactinol-raffinose galactosyltransferase; Found in the gene: LotjaGi1g1v0011600 LjG1.1_chr1 1418811 1423304 -
2 domain predictions
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LotjaGi1g1v0025100.1
n.a. Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT5G55180.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0R0L9X1|A0A0R0L9X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025100 LjG1.1_chr1 2981875 2984376 -
2 domain predictions
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LotjaGi1g1v0066700.1
n.a. Glucan endo-1,3-beta-glucosidase 3; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|I1JIJ8|I1JIJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 LjG1.1_chr1 9182045 9185244 +
2 domain predictions
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LotjaGi1g1v0066700.2
n.a. Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0R0GI68|A0A0R0GI68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 LjG1.1_chr1 9182543 9184177 +
2 domain predictions
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LotjaGi1g1v0066700.3
n.a. Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0R0GI68|A0A0R0GI68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 LjG1.1_chr1 9182550 9184188 +
2 domain predictions
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LotjaGi1g1v0066700.4
n.a. Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0R0GI68|A0A0R0GI68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 LjG1.1_chr1 9182573 9184177 +
2 domain predictions
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LotjaGi1g1v0067600_LC.1
n.a. Alpha-galactosidase; TAIR: AT3G26380.1 Melibiase family protein; Swiss-Prot: sp|Q42656|AGAL_COFAR Alpha-galactosidase; TrEMBL-Plants: tr|A0A1J7IU17|A0A1J7IU17_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0067600_LC LjG1.1_chr1 9366298 9371183 +
2 domain predictions
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LotjaGi1g1v0067700_LC.1
n.a. Alpha-galactosidase; TAIR: AT3G26380.1 Melibiase family protein; Swiss-Prot: sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex; TrEMBL-Plants: tr|K7M509|K7M509_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0067700_LC LjG1.1_chr1 9381937 9383212 +
2 domain predictions
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LotjaGi1g1v0081800.1
n.a. Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT3G55780.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|G7KBV7|G7KBV7_MEDTR Glycoside hydrolase family 17 protein; Found in the gene: LotjaGi1g1v0081800 LjG1.1_chr1 11798798 11800461 -
2 domain predictions
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LotjaGi1g1v0094500.1
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14250414 14253872 -
2 domain predictions
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LotjaGi1g1v0094500.2
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|K7M8E9|K7M8E9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14250721 14252672 -
2 domain predictions
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LotjaGi1g1v0094500.3
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14251118 14252682 -
2 domain predictions
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LotjaGi1g1v0094500.4
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14251118 14252847 -
2 domain predictions
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LotjaGi1g1v0094500.5
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14251184 14252697 -
2 domain predictions
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LotjaGi1g1v0094500.6
n.a. Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 LjG1.1_chr1 14251184 14253718 -
2 domain predictions
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LotjaGi1g1v0123200.1
n.a. Beta-glucosidase; TAIR: AT3G47000.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|A7LXU3|BGH3B_BACO1 Beta-glucosidase BoGH3B; TrEMBL-Plants: tr|I1JHB3|I1JHB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0123200 LjG1.1_chr1 19510945 19517636 +
2 domain predictions
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LotjaGi1g1v0123200.2
n.a. Beta-glucosidase; TAIR: AT3G47000.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|A7LXU3|BGH3B_BACO1 Beta-glucosidase BoGH3B; TrEMBL-Plants: tr|A0A151RS31|A0A151RS31_CAJCA Lysosomal beta glucosidase; Found in the gene: LotjaGi1g1v0123200 LjG1.1_chr1 19510945 19519452 +
2 domain predictions
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LotjaGi1g1v0147600.1
n.a. Beta-xylosidase, putative; TAIR: AT1G78060.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7; TrEMBL-Plants: tr|A0A1J7HJ40|A0A1J7HJ40_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147600 LjG1.1_chr1 25222892 25228713 +
2 domain predictions
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LotjaGi1g1v0148100.1
n.a. Glucan 1,3-beta-glucosidase; TAIR: AT4G16680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B0XN12|EXGA_ASPFC Probable glucan 1,3-beta-glucosidase A; TrEMBL-Plants: tr|I1LW02|I1LW02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0148100 LjG1.1_chr1 25310649 25315017 -
2 domain predictions
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