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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023214
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 570 results. Now displaying 2 of 12 with 50 rows per page. This search has taken 6.298s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0289499.2
n.a. aminophospholipid ATPase [Populus trichocarpa] gi|224121336|ref|XP_002318557.1| chr0 150337541 150345011 -
3 domain predictions
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Lj0g3v0291639.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356575586|ref|XP_003555920.1| chr0 151327704 151332006 -
3 domain predictions
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Lj0g3v0293799.1
n.a. PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like [Cicer arietinum] gi|502080501|ref|XP_004486584.1| chr0 152584887 152590629 +
2 domain predictions
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Lj0g3v0295639.1
n.a. Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1| chr0 153593023 153601407 +
4 domain predictions
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Lj0g3v0298819.1
n.a. PREDICTED: pseudouridine-5'-monophosphatase-like [Cicer arietinum] gi|502150234|ref|XP_004507854.1| chr0 155291423 155299134 +
4 domain predictions
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Lj0g3v0306329.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356540303|ref|XP_003538629.1| chr0 159833363 159838929 -
3 domain predictions
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Lj0g3v0306329.2
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356540303|ref|XP_003538629.1| chr0 159833363 159838869 -
3 domain predictions
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Lj0g3v0306739.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356531696|ref|XP_003534412.1| chr0 160074231 160078167 -
3 domain predictions
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Lj0g3v0306739.2
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356531696|ref|XP_003534412.1| chr0 160074231 160078167 -
3 domain predictions
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Lj0g3v0310959.1
n.a. PREDICTED: protein CbbY, chromosomal-like [Glycine max] gi|356525461|ref|XP_003531343.1| chr0 162408599 162410894 +
4 domain predictions
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Lj0g3v0312389.1
n.a. ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Theobroma cacao] gi|508710299|gb|EOY02196.1| chr0 163054856 163060208 -
3 domain predictions
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Lj0g3v0312389.2
n.a. ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Theobroma cacao] gi|508710299|gb|EOY02196.1| chr0 163055108 163060173 -
3 domain predictions
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Lj0g3v0314949.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356501787|ref|XP_003519705.1| chr0 164453305 164459712 +
3 domain predictions
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Lj0g3v0314949.2
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356501787|ref|XP_003519705.1| chr0 164455044 164459712 +
3 domain predictions
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Lj0g3v0314979.1
n.a. PREDICTED: protein CbbY, chromosomal-like [Glycine max] gi|356525461|ref|XP_003531343.1| chr0 164469474 164470454 +
3 domain predictions
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Lj0g3v0316289.1
n.a. PREDICTED: acid phosphatase 1-like [Cicer arietinum] gi|502178688|ref|XP_004516313.1| chr0 165148145 165154488 +
3 domain predictions
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Lj0g3v0318659.1
n.a. type IIB calcium ATPase [Medicago truncatula] gi|18483249|gb|AAL73984.1|AF466149_1 chr0 166424464 166437540 -
2 domain predictions
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Lj0g3v0318659.3
n.a. type IIB calcium ATPase [Medicago truncatula] gi|18483249|gb|AAL73984.1|AF466149_1 chr0 166434564 166437084 -
3 domain predictions
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Lj0g3v0319789.1
n.a. PREDICTED: inorganic pyrophosphatase 2-like [Glycine max] gi|356526041|ref|XP_003531628.1| chr0 166908318 166909216 +
3 domain predictions
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Lj0g3v0325449.1
n.a. PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3-like [Cicer arietinum] gi|502108258|ref|XP_004493428.1| chr0 170051901 170055764 +
4 domain predictions
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Lj0g3v0333259.1
n.a. PREDICTED: acid phosphatase 1-like [Glycine max] gi|356575237|ref|XP_003555748.1| chr0 174385571 174386987 -
3 domain predictions
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Lj0g3v0340539.1
n.a. Phosphoglycolate phosphatase [Medicago truncatula] gi|357440899|ref|XP_003590727.1| chr0 178381757 178385939 +
3 domain predictions
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Lj0g3v0340539.2
n.a. Phosphoglycolate phosphatase [Medicago truncatula] gi|357440899|ref|XP_003590727.1| chr0 178381757 178385939 +
4 domain predictions
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Lj0g3v0347379.1
n.a. PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like [Glycine max] gi|356549714|ref|XP_003543236.1| chr0 182275415 182281360 +
2 domain predictions
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Lj0g3v0347379.2
n.a. PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like [Glycine max] gi|356544052|ref|XP_003540469.1| chr0 182275415 182281360 +
3 domain predictions
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Lj0g3v0349429.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356562495|ref|XP_003549506.1| chr0 183496961 183498564 +
3 domain predictions
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Lj0g3v0359299.1
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357476939|ref|XP_003608755.1| chr0 189155917 189159817 -
3 domain predictions
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Lj0g3v0359299.2
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357476939|ref|XP_003608755.1| chr0 189155917 189159817 -
3 domain predictions
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Lj1g3v0293690.1
n.a. PREDICTED: protein CbbY-like [Cicer arietinum] gi|502133626|ref|XP_004501834.1| chr1 3403939 3407817 -
4 domain predictions
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Lj1g3v0414960.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356516692|ref|XP_003527027.1| chr1 5086713 5093424 +
3 domain predictions
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Lj1g3v0695110.1
n.a. PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cicer arietinum] gi|502142103|ref|XP_004504792.1| chr1 8997172 9005083 -
3 domain predictions
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Lj1g3v1385230.1
n.a. PREDICTED: probable cation-transporting ATPase-like [Cicer arietinum] gi|502137236|ref|XP_004503017.1| chr1 16836439 16849281 +
3 domain predictions
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Lj1g3v1649060.1
n.a. Phosphatidate phosphatase LPIN3 [Medicago truncatula] gi|357465493|ref|XP_003603031.1| chr1 19733997 19741486 +
3 domain predictions
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Lj1g3v1721250.1
n.a. PREDICTED: calcium-transporting ATPase 1, chloroplastic-like [Glycine max] gi|356510560|ref|XP_003524005.1| chr1 20288354 20295957 +
2 domain predictions
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Lj1g3v1733460.1
n.a. PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoform 1 [Glycine max] gi|356510586|ref|XP_003524018.1| chr1 20389370 20413808 +
2 domain predictions
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Lj1g3v1733460.2
n.a. PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoform 1 [Glycine max] gi|356510586|ref|XP_003524018.1| chr1 20406188 20413808 +
3 domain predictions
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Lj1g3v1788240.1
n.a. copper P1B-ATPase [Glycine max] gi|110630091|gb|ABD64063.1| chr1 21409305 21418458 +
3 domain predictions
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Lj1g3v1788240.2
n.a. copper P1B-ATPase [Glycine max] gi|110630091|gb|ABD64063.1| chr1 21409305 21418458 +
3 domain predictions
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Lj1g3v1966250.1
n.a. PREDICTED: plasma membrane ATPase 4-like [Cicer arietinum] gi|502132162|ref|XP_004501246.1| chr1 23288263 23297566 +
3 domain predictions
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Lj1g3v2301880.1
n.a. PREDICTED: glycerol-3-phosphate acyltransferase 6-like [Glycine max] gi|356568058|ref|XP_003552230.1| chr1 27145386 27148953 -
3 domain predictions
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Lj1g3v2312970.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
3 domain predictions
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Lj1g3v2312970.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
3 domain predictions
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Lj1g3v2471250.1
n.a. PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max] gi|356530169|ref|XP_003533656.1| chr1 28688119 28696112 -
3 domain predictions
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Lj1g3v2535000.1
n.a. Syringolide-induced protein B15-3-5 [Medicago truncatula] gi|357512727|ref|XP_003626652.1| chr1 29114127 29119683 +
3 domain predictions
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Lj1g3v2584520.1
n.a. Phosphatidate phosphatase LPIN3 [Medicago truncatula] gi|357465493|ref|XP_003603031.1| chr1 29863798 29870896 -
3 domain predictions
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Lj1g3v2671450.2
n.a. Uncharacterized protein TCM_005310 [Theobroma cacao] gi|508704032|gb|EOX95928.1| chr1 31145188 31148294 +
3 domain predictions
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Lj1g3v2671470.1
n.a. Uncharacterized protein TCM_005310 [Theobroma cacao] gi|508704032|gb|EOX95928.1| chr1 31150051 31153540 +
3 domain predictions
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Lj1g3v2671470.2
n.a. Uncharacterized protein TCM_005310 [Theobroma cacao] gi|508704032|gb|EOX95928.1| chr1 31151155 31153540 +
3 domain predictions
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Lj1g3v2809360.1
n.a. Phosphoglycolate phosphatase [Medicago truncatula] gi|357507679|ref|XP_003624128.1| chr1 31984754 31993721 +
4 domain predictions
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Lj1g3v2809360.2
n.a. Phosphoglycolate phosphatase [Medicago truncatula] gi|357507679|ref|XP_003624128.1| chr1 31986403 31993721 +
4 domain predictions
 –