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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0072800 |
| Transcript ID | LotjaGi5g1v0072800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A068F783|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12057620..12059442) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTTTTAAATTAAAATTACTGAAGGGTATTTTGGTCTTTTTGCAGTTTTGGGGATGACTCGCTTAGCAAAATAGG AGACGCGAATAGTCTCATACTAATTAATATACATAGGTCATAGCCCATAGGGGCTTGAATCCAGGTCCAAATCAAAGTCC CCTCCCCAAAAACGCAAAATCAACAGTAGCATTCATTTCCCGCCCACACACACCGCAAACATCCATGGCCGACGGCAAAA AGCGCCGCCGTACCGACCCAACCGAGAACTCTCTTCCCTTCAAGAACAAGCTGAAACCAGACTCAGTGATCCTGGAAACC CTGAAGGAGTTCTCAACCTCCTCATCAGCTTCTTCATCCTCCTCTTCCGCCGCAGACAAAACCCTAACCCTCCAAGACCT CTCCCTCCCCTTCCGCTGCCGCGAGGTGGCGGACCTCTCCCTCTCCTCCGTGCAATCCAACATCGAGTCTCTCGCCCGCA AGATCGCGCACTCCATCCTCACCGGTAACGGCTTCGCCTTCGATGTCCCCTCCCGCTCCTCCGCCAACCAGCTCTATGTC CCTGAACTCGACCGCATCGTCCTCAAGGATAAATCCTCCCTCCGCCCGTTTGGTAACATCTCCACCGTCCGCAAATCCAC CATCACCGCCCGCATCCTCGAGCTCATCCACCAGCTCTGCCTCAAGGGGATTCATGTCACCAAGCGTGACCTCTTCTACA CAGATGTTAAGCTCTTCAAGGACCAGGTATGCTGCTATCAAACCCTCACAATCTCGAATTGGAATTAGAATTAGCAATTT GAACTGCAATTTGTTAATTGATTAATTGAAAGTTAGCTAACACTTGTGGTGTTGAATTGAATCTCAGACTCAATCGGATA CCGTACTTGATGATGTTTCGTGCATGCTGGGGTGTACTAGGTCGAGTCTTAATGTTGTTGCTGCGGAGAAAGGGGTGGTT GTAGGAAGGTTGATTTTCAGTGATAATGGGGATGTTATTGATTGTACTAAGATGGGTATGGGAGGGAAAGCGATTCCGCC GAATATAGATCGAGTTGGGGATATGCAAAGTGATGCCTTGTTCATTCTCTTGGTGGAGAAGGACGCTGCTTATATGAGGC TGGCTGAGGACAGGTTCTACAACCGGTTCCCGTGTATCATTGTGACGGCCAAAGGGCAGCCTGATGTTTCCACGAGGCTG TTCTTGAGGAAGATGAAGATGGAGCTGAAGCTGCCTGTGCTGGCACTTGTGGACAGTGATCCTTACGGGTTGAAGATTTT ATCGGTTTATGGGTGTGGTTCCAAGAACATGTCCTATGACAGTGCTCACTTGACCACCCCTGATATAAAGTGGCTTGGGG TTAGGCCTAGTGATTTGGACAAGTACAAGATACCTGAGCAGTGTAGGTTGCCCATGACCGAGCAGGATATTAAGACTGGG AAGGACATGTTGGAGGAGGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAGGAATTAACTTTGATGGTCAAAACTAAACA GAAAGCTGAAATACAGGCTTTGAGCACCTTTGGTTTTCAGTATCTCTCTGAAGTGTACTTGCCCTTGAAATTGCAGCAGA AGGATTGGCTATGAGTAATGTACTGTTGAAGGATTATTCCTGTGTCTTATCAGCTGAGGATGCTACATTTAGAGTGGAAT GTAATGAATTTCTAGTTATCATCCATTGGAAATTTGTTAAGTAACTTTTGTTCAAAAATCATGTTAATGGTATTTTTTTT TTCAAACTGAGTTTATAATTTTGCCTTGCTGTGTTCTTCTTACTCTTAGATCAGTAAATGCTC
CDS sequence (LotjaGi5g1v0072800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGACGGCAAAAAGCGCCGCCGTACCGACCCAACCGAGAACTCTCTTCCCTTCAAGAACAAGCTGAAACCAGACTC AGTGATCCTGGAAACCCTGAAGGAGTTCTCAACCTCCTCATCAGCTTCTTCATCCTCCTCTTCCGCCGCAGACAAAACCC TAACCCTCCAAGACCTCTCCCTCCCCTTCCGCTGCCGCGAGGTGGCGGACCTCTCCCTCTCCTCCGTGCAATCCAACATC GAGTCTCTCGCCCGCAAGATCGCGCACTCCATCCTCACCGGTAACGGCTTCGCCTTCGATGTCCCCTCCCGCTCCTCCGC CAACCAGCTCTATGTCCCTGAACTCGACCGCATCGTCCTCAAGGATAAATCCTCCCTCCGCCCGTTTGGTAACATCTCCA CCGTCCGCAAATCCACCATCACCGCCCGCATCCTCGAGCTCATCCACCAGCTCTGCCTCAAGGGGATTCATGTCACCAAG CGTGACCTCTTCTACACAGATGTTAAGCTCTTCAAGGACCAGACTCAATCGGATACCGTACTTGATGATGTTTCGTGCAT GCTGGGGTGTACTAGGTCGAGTCTTAATGTTGTTGCTGCGGAGAAAGGGGTGGTTGTAGGAAGGTTGATTTTCAGTGATA ATGGGGATGTTATTGATTGTACTAAGATGGGTATGGGAGGGAAAGCGATTCCGCCGAATATAGATCGAGTTGGGGATATG CAAAGTGATGCCTTGTTCATTCTCTTGGTGGAGAAGGACGCTGCTTATATGAGGCTGGCTGAGGACAGGTTCTACAACCG GTTCCCGTGTATCATTGTGACGGCCAAAGGGCAGCCTGATGTTTCCACGAGGCTGTTCTTGAGGAAGATGAAGATGGAGC TGAAGCTGCCTGTGCTGGCACTTGTGGACAGTGATCCTTACGGGTTGAAGATTTTATCGGTTTATGGGTGTGGTTCCAAG AACATGTCCTATGACAGTGCTCACTTGACCACCCCTGATATAAAGTGGCTTGGGGTTAGGCCTAGTGATTTGGACAAGTA CAAGATACCTGAGCAGTGTAGGTTGCCCATGACCGAGCAGGATATTAAGACTGGGAAGGACATGTTGGAGGAGGATTTTG TCAAGAAGAATCCTGGTTGGGTTGAGGAATTAACTTTGATGGTCAAAACTAAACAGAAAGCTGAAATACAGGCTTTGAGC ACCTTTGGTTTTCAGTATCTCTCTGAAGTGTACTTGCCCTTGAAATTGCAGCAGAAGGATTGGCTATGA
Protein sequence (LotjaGi5g1v0072800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADGKKRRRTDPTENSLPFKNKLKPDSVILETLKEFSTSSSASSSSSSAADKTLTLQDLSLPFRCREVADLSLSSVQSNI ESLARKIAHSILTGNGFAFDVPSRSSANQLYVPELDRIVLKDKSSLRPFGNISTVRKSTITARILELIHQLCLKGIHVTK RDLFYTDVKLFKDQTQSDTVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDVIDCTKMGMGGKAIPPNIDRVGDM QSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVSTRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSK NMSYDSAHLTTPDIKWLGVRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELTLMVKTKQKAEIQALS TFGFQYLSEVYLPLKLQQKDWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 38 | 422 | 385 | 1.3E-216 | ||
| PANTHER | 38 | 422 | 385 | 1.3E-216 | – | |
| Gene3D | 66 | 200 | 135 | 4.8E-17 | ||
| Hamap | 70 | 422 | 353 | 36.475 | ||
| PRINTS | 102 | 122 | 21 | 3.8E-23 | ||
| SUPERFAMILY | 136 | 422 | 287 | 7.85E-90 | ||
| Pfam | 136 | 197 | 62 | 1.3E-21 | ||
| PRINTS | 160 | 171 | 12 | 9.8E-43 | ||
| PRINTS | 168 | 185 | 18 | 3.8E-23 | ||
| PRINTS | 174 | 191 | 18 | 9.8E-43 | ||
| PRINTS | 192 | 207 | 16 | 9.8E-43 | ||
| Gene3D | 201 | 422 | 222 | 2.1E-79 | – | |
| PRINTS | 221 | 239 | 19 | 3.8E-23 | ||
| CDD | 246 | 406 | 161 | 1.76953E-72 | ||
| PRINTS | 247 | 264 | 18 | 9.8E-43 | ||
| PRINTS | 271 | 292 | 22 | 9.8E-43 | ||
| PRINTS | 277 | 297 | 21 | 3.8E-23 | ||
| PRINTS | 303 | 319 | 17 | 9.8E-43 | ||
| PRINTS | 393 | 416 | 24 | 3.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA catabolic process, endonucleolytic | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. | ||
| Molecular function | Endodeoxyribonuclease activity, producing 3'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. |
Expression pattern of LotjaGi5g1v0072800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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