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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003152
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We have found 20 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.664s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1695260.1
n.a. PREDICTED: transformation/transcription domain-associated protein-like isoform X1 [Cicer arietinum] gi|502161350|ref|XP_004512131.1| chr2 26178306 26207647 -
4 domain predictions
1 GO term
Lj2g3v1695260.2
n.a. PREDICTED: transformation/transcription domain-associated protein-like isoform X1 [Cicer arietinum] gi|502161350|ref|XP_004512131.1| chr2 26178306 26207647 -
4 domain predictions
1 GO term
Lj3g3v3337380.1
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40671088 40687710 +
4 domain predictions
1 GO term
Lj5g3v2258320.1
n.a. PREDICTED: serine/threonine-protein kinase ATR-like [Glycine max] gi|356534437|ref|XP_003535761.1| chr5 32732549 32745177 -
4 domain predictions
1 GO term
Lj6g3v0227610.1
n.a. PREDICTED: transformation/transcription domain-associated protein-like [Glycine max] gi|356496647|ref|XP_003517177.1| chr6 2727327 2735164 -
4 domain predictions
1 GO term
LotjaGi1g1v0180100.2
n.a. Serine/threonine-protein kinase; TAIR: AT3G48190.2 Serine/Threonine-kinase ATM-like protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A0R0KG32|A0A0R0KG32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180100 LjG1.1_chr1 34763786 34839512 +
4 domain predictions
1 GO term
LotjaGi2g1v0381400.1
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1; TrEMBL-Plants: tr|V7CI88|V7CI88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0381400 LjG1.1_chr2 87777440 87807436 -
4 domain predictions
1 GO term
LotjaGi2g1v0381400.2
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1; TrEMBL-Plants: tr|V7CI88|V7CI88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0381400 LjG1.1_chr2 87777745 87807507 -
4 domain predictions
1 GO term
LotjaGi2g1v0381400.3
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1; TrEMBL-Plants: tr|V7CI88|V7CI88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0381400 LjG1.1_chr2 87778332 87801640 -
4 domain predictions
1 GO term
LotjaGi2g1v0381400.4
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein; TrEMBL-Plants: tr|V7CI88|V7CI88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0381400 LjG1.1_chr2 87778332 87807005 -
4 domain predictions
1 GO term
LotjaGi2g1v0459200.1
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|I1LFQ6|I1LFQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459200 LjG1.1_chr2 95265424 95310480 +
4 domain predictions
1 GO term
LotjaGi2g1v0459200.2
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A0R0LMJ1|A0A0R0LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459200 LjG1.1_chr2 95265736 95302315 +
4 domain predictions
1 GO term
LotjaGi3g1v0502700.1
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1; TrEMBL-Plants: tr|K7LPC3|K7LPC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700 LjG1.1_chr3 92081007 92097181 +
4 domain predictions
1 GO term
LotjaGi5g1v0351400.1
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66723959 66738620 -
4 domain predictions
1 GO term
LotjaGi5g1v0351400.2
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66726302 66737628 -
4 domain predictions
1 GO term
LotjaGi5g1v0351400.3
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66726302 66738502 -
4 domain predictions
1 GO term
LotjaGi6g1v0032900.1
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein; TrEMBL-Plants: tr|A0A1J7GST8|A0A1J7GST8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0032900 LjG1.1_chr6 6153569 6185599 -
4 domain predictions
1 GO term
LotjaGi6g1v0032900.2
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein; TrEMBL-Plants: tr|A0A1J7GST8|A0A1J7GST8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0032900 LjG1.1_chr6 6153583 6192634 -
4 domain predictions
1 GO term
LotjaGi6g1v0032900.3
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein; TrEMBL-Plants: tr|A0A1J7GST8|A0A1J7GST8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0032900 LjG1.1_chr6 6153915 6182288 -
4 domain predictions
1 GO term
LotjaGi6g1v0032900.4
n.a. Transcription-associated protein 1; TAIR: AT2G17930.1 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein; Swiss-Prot: sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein; TrEMBL-Plants: tr|A0A1J7GST8|A0A1J7GST8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0032900 LjG1.1_chr6 6153915 6192634 -
4 domain predictions
1 GO term