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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0141500 |
| Transcript ID | LotjaGi3g1v0141500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18754139..18755959) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGGCAATGACAAAACCAACTTACACTGCAATTGTTCAACATGCGAAGAATGGTAAACCTGCTCTTGTGTTTGTACC TACAAGGAAACATGTTCGGCTGACGGCTGTGGATCTGATAACTTACTCAGGTGCTGACAGTGGAGAGAAACCGTTTTTAT TGCGGTCCATTGAAGAAATTGATCCTTTTCTTAACAAGATTAGTGATGAAATGTTGAAAGTCACTTTACGTGAAGGCGTG GGTTACTTGCATGAGGGCTTGAACAGTCTTGATCAAGACATTGTAACACAGCTATTTGAAGCTGGCTGGATTCAGGTCTG TGTTTTAAGCAGTTCCATGTGTTGGGGATTGGCATTATCTGCTCATTTGGTAGTCGTGATGGGCACACAATACTATGATG GGCGGGAGAATGCACAGTCAGATTACCCTGTTACTGATCTTCTGCAGATGATGGGTCATGCCAGCCGACCTCTGGTGGAT AATTCTGGAAAATGTGTCATCTTGTGCCATGCACCTCGTAAGGAGTACTACAAGAAGTTCTTGTATGAAGCATTCCCGGT TGAAAGTCATCTTCATCACTTCCTACATGATAACTTGAATGCTGAAATTGTTGCTGGAATTGTTGAAAACAAGCAAGATG CTGTAGATTATCTTACATGGACATTTATGTACAGGCGGCTAACCCAGAATCCCAACTACTATAATTTACAAGGAGTTAGT CACAGGCATCTATCTGATCACCTCTCAGAGATGGTGGAGAATACATTGAGTGATTTAGAAGCGAGCAAGTGTGTTGCTAT TGAGGATGATATGGACCTTTCTCCTCTCAATCTAGGAATGATAGCATCATATTATTACATCAGTTACACAACGATTGAAA GGTTTTCATCATCTTTGACCTCAAAAACAAAAATGAAGGGTCTTTTGGAGGTTCTATCCTCAGCTTCAGAGTATGCTCAG CTTCCCATACGACCTGGGGAGGAAGAGGTGGTTCGTAGGTTAATTAATCACCAGAGGTTTTCCTTTGAAAATCCCAAAGT TACAGACCCACATGTTAAAGCTAATGCTTTGCTTCAGGCCCATTTCTCTAGGCAATCTGTTGGTGGGAACCTTTCATTGG ACCAGAGAGAGGTGCTTCTTTCTTCAAGTAGACTTCTTCAGGCAATGGTTGATGTTATATCGAGCAGTGGTTGGCTCAGC CTGGCTCTTCTTGCTATGGAAGTTAGTCAAATGGTGACACAAGGGATGTGGGAACGTGACTCAATGCTACTGCAGCTTCC TCATTTTACGAAGGATTTGGCTAAGAGATGCCAGGAGAACCCCGGGAAGAGTGTTGAAACTGTGTTTGATTTATTAGAGA TGGAGGATGATGAGAGGCGTGAATTGTTGGGCATGTCAGATTCACAGTTGTTGGATATTGCTCGATTTTGCAACCGTTTT CCTAATATTGATTTGTCATATGACGTCCTGGACAGTGACAATGTGCGGGCTGGGGAGGATATCACAATACAGGTCACTCT TGAGCGGGATCTCGAGGGTAAGACAGAAGTAGGACCTGTTGATGCTCCCAGGTATCCAAAAGCAAAGGAGGAAGGATGGT GGCTTGTTGTTGGTGATACCAGAAACAACTTGTTGCTTGCCATTAAACGTGTTTCCCTGCAACGGAAGTTGAAAGCCAAA CTAGAGTTTGCTGCTCCAGCTGATGCTGGAAAGAAATCCTACGTGCTTTATTTCATGTGTGATTCATACATGGGGTGTGA TCAGGAATATGGTTTCACTGTTGATGTTAAGGAAGCTGATGAAGATAGTGGCAAAGATTGA
CDS sequence (LotjaGi3g1v0141500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGCAATGACAAAACCAACTTACACTGCAATTGTTCAACATGCGAAGAATGGTAAACCTGCTCTTGTGTTTGTACC TACAAGGAAACATGTTCGGCTGACGGCTGTGGATCTGATAACTTACTCAGGTGCTGACAGTGGAGAGAAACCGTTTTTAT TGCGGTCCATTGAAGAAATTGATCCTTTTCTTAACAAGATTAGTGATGAAATGTTGAAAGTCACTTTACGTGAAGGCGTG GGTTACTTGCATGAGGGCTTGAACAGTCTTGATCAAGACATTGTAACACAGCTATTTGAAGCTGGCTGGATTCAGGTCTG TGTTTTAAGCAGTTCCATGTGTTGGGGATTGGCATTATCTGCTCATTTGGTAGTCGTGATGGGCACACAATACTATGATG GGCGGGAGAATGCACAGTCAGATTACCCTGTTACTGATCTTCTGCAGATGATGGGTCATGCCAGCCGACCTCTGGTGGAT AATTCTGGAAAATGTGTCATCTTGTGCCATGCACCTCGTAAGGAGTACTACAAGAAGTTCTTGTATGAAGCATTCCCGGT TGAAAGTCATCTTCATCACTTCCTACATGATAACTTGAATGCTGAAATTGTTGCTGGAATTGTTGAAAACAAGCAAGATG CTGTAGATTATCTTACATGGACATTTATGTACAGGCGGCTAACCCAGAATCCCAACTACTATAATTTACAAGGAGTTAGT CACAGGCATCTATCTGATCACCTCTCAGAGATGGTGGAGAATACATTGAGTGATTTAGAAGCGAGCAAGTGTGTTGCTAT TGAGGATGATATGGACCTTTCTCCTCTCAATCTAGGAATGATAGCATCATATTATTACATCAGTTACACAACGATTGAAA GGTTTTCATCATCTTTGACCTCAAAAACAAAAATGAAGGGTCTTTTGGAGGTTCTATCCTCAGCTTCAGAGTATGCTCAG CTTCCCATACGACCTGGGGAGGAAGAGGTGGTTCGTAGGTTAATTAATCACCAGAGGTTTTCCTTTGAAAATCCCAAAGT TACAGACCCACATGTTAAAGCTAATGCTTTGCTTCAGGCCCATTTCTCTAGGCAATCTGTTGGTGGGAACCTTTCATTGG ACCAGAGAGAGGTGCTTCTTTCTTCAAGTAGACTTCTTCAGGCAATGGTTGATGTTATATCGAGCAGTGGTTGGCTCAGC CTGGCTCTTCTTGCTATGGAAGTTAGTCAAATGGTGACACAAGGGATGTGGGAACGTGACTCAATGCTACTGCAGCTTCC TCATTTTACGAAGGATTTGGCTAAGAGATGCCAGGAGAACCCCGGGAAGAGTGTTGAAACTGTGTTTGATTTATTAGAGA TGGAGGATGATGAGAGGCGTGAATTGTTGGGCATGTCAGATTCACAGTTGTTGGATATTGCTCGATTTTGCAACCGTTTT CCTAATATTGATTTGTCATATGACGTCCTGGACAGTGACAATGTGCGGGCTGGGGAGGATATCACAATACAGGTCACTCT TGAGCGGGATCTCGAGGGTAAGACAGAAGTAGGACCTGTTGATGCTCCCAGGTATCCAAAAGCAAAGGAGGAAGGATGGT GGCTTGTTGTTGGTGATACCAGAAACAACTTGTTGCTTGCCATTAAACGTGTTTCCCTGCAACGGAAGTTGAAAGCCAAA CTAGAGTTTGCTGCTCCAGCTGATGCTGGAAAGAAATCCTACGTGCTTTATTTCATGTGTGATTCATACATGGGGTGTGA TCAGGAATATGGTTTCACTGTTGATGTTAAGGAAGCTGATGAAGATAGTGGCAAAGATTGA
Protein sequence (LotjaGi3g1v0141500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLITYSGADSGEKPFLLRSIEEIDPFLNKISDEMLKVTLREGV GYLHEGLNSLDQDIVTQLFEAGWIQVCVLSSSMCWGLALSAHLVVVMGTQYYDGRENAQSDYPVTDLLQMMGHASRPLVD NSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIVENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVS HRHLSDHLSEMVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYTTIERFSSSLTSKTKMKGLLEVLSSASEYAQ LPIRPGEEEVVRRLINHQRFSFENPKVTDPHVKANALLQAHFSRQSVGGNLSLDQREVLLSSSRLLQAMVDVISSSGWLS LALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKSVETVFDLLEMEDDERRELLGMSDSQLLDIARFCNRF PNIDLSYDVLDSDNVRAGEDITIQVTLERDLEGKTEVGPVDAPRYPKAKEEGWWLVVGDTRNNLLLAIKRVSLQRKLKAK LEFAAPADAGKKSYVLYFMCDSYMGCDQEYGFTVDVKEADEDSGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 188 | 188 | 5.7E-56 | – | |
| PANTHER | 3 | 606 | 604 | 5.0E-262 | – | |
| PANTHER | 3 | 606 | 604 | 5.0E-262 | – | |
| SUPERFAMILY | 6 | 186 | 181 | 9.54E-31 | ||
| CDD | 6 | 170 | 165 | 1.96937E-30 | – | |
| SMART | 70 | 158 | 89 | 0.0078 | ||
| SUPERFAMILY | 186 | 287 | 102 | 1.01E-9 | ||
| Gene3D | 189 | 275 | 87 | 1.8E-38 | – | |
| Pfam | 275 | 592 | 318 | 5.9E-76 | ||
| SMART | 275 | 594 | 320 | 3.2E-107 | ||
| Gene3D | 279 | 419 | 141 | 1.3E-49 | – | |
| SUPERFAMILY | 304 | 481 | 178 | 4.45E-54 | – | |
| Gene3D | 420 | 480 | 61 | 7.4E-27 | – | |
| Gene3D | 481 | 606 | 126 | 2.1E-45 | ||
| SUPERFAMILY | 482 | 598 | 117 | 9.66E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0141500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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