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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0274529 |
| Transcript ID | Lj0g3v0274529.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 843 | 843 | 0 | – | |
| PANTHER | 1 | 843 | 843 | 0 | – | |
| CDD | 13 | 123 | 111 | 2.26E-52 | – | |
| Gene3D | 13 | 126 | 114 | 4.60E-41 | ||
| SUPERFAMILY | 14 | 122 | 109 | 4.11E-27 | ||
| Pfam | 16 | 122 | 107 | 2.60E-06 | ||
| MobiDBLite | 139 | 164 | 26 | – | – | |
| SUPERFAMILY | 245 | 638 | 394 | 3.14E-97 | ||
| Gene3D | 245 | 636 | 392 | 2.50E-106 | ||
| ProSiteProfiles | 246 | 308 | 63 | 10.424 | ||
| PRINTS | 256 | 272 | 17 | 5.80E-17 | ||
| ProSitePatterns | 295 | 305 | 11 | – | ||
| Pfam | 309 | 357 | 49 | 3.50E-11 | ||
| ProSiteProfiles | 309 | 360 | 52 | 14.564 | ||
| PRINTS | 311 | 327 | 17 | 5.80E-17 | ||
| Pfam | 360 | 411 | 52 | 2.30E-09 | ||
| PRINTS | 361 | 377 | 17 | 5.80E-17 | ||
| ProSiteProfiles | 361 | 415 | 55 | 13.921 | ||
| PRINTS | 402 | 418 | 17 | 5.80E-17 | ||
| ProSiteProfiles | 416 | 467 | 52 | 12.615 | ||
| Pfam | 416 | 464 | 49 | 3.60E-12 | ||
| PRINTS | 418 | 432 | 15 | 5.80E-17 | ||
| ProSitePatterns | 454 | 464 | 11 | – | ||
| Pfam | 480 | 529 | 50 | 5.70E-12 | ||
| ProSiteProfiles | 481 | 532 | 52 | 15.609 | ||
| PRINTS | 522 | 540 | 19 | 5.80E-17 | ||
| Pfam | 532 | 581 | 50 | 4.30E-08 | ||
| ProSiteProfiles | 533 | 584 | 52 | 13.459 | ||
| PRINTS | 580 | 601 | 22 | 5.80E-17 | ||
| ProSiteProfiles | 585 | 636 | 52 | 14.343 | ||
| Pfam | 586 | 633 | 48 | 3.60E-14 | ||
| SMART | 633 | 704 | 72 | 1.00E-16 | ||
| Pfam | 637 | 703 | 67 | 6.60E-13 | ||
| Gene3D | 637 | 707 | 71 | 4.50E-15 | ||
| SUPERFAMILY | 637 | 710 | 74 | 1.44E-14 | ||
| ProSiteProfiles | 641 | 703 | 63 | 11.955 | ||
| MobiDBLite | 798 | 819 | 22 | – | – | |
| Coils | 815 | 842 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0274529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0274529.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.