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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0311279 |
| Transcript ID | Lj0g3v0311279.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 795 | 795 | 0 | – | |
| PANTHER | 1 | 795 | 795 | 0 | – | |
| Gene3D | 11 | 127 | 117 | 7.10E-38 | ||
| CDD | 12 | 124 | 113 | 5.13E-47 | – | |
| SUPERFAMILY | 13 | 123 | 111 | 5.82E-25 | ||
| Pfam | 15 | 123 | 109 | 7.10E-07 | ||
| MobiDBLite | 144 | 229 | 86 | – | – | |
| SUPERFAMILY | 235 | 624 | 390 | 2.09E-96 | ||
| Gene3D | 236 | 623 | 388 | 9.10E-100 | ||
| ProSiteProfiles | 297 | 348 | 52 | 14.243 | ||
| Pfam | 297 | 345 | 49 | 2.00E-09 | ||
| PRINTS | 299 | 315 | 17 | 2.10E-14 | ||
| ProSiteProfiles | 349 | 403 | 55 | 14.484 | ||
| Pfam | 349 | 400 | 52 | 9.40E-10 | ||
| PRINTS | 349 | 365 | 17 | 2.10E-14 | ||
| PRINTS | 390 | 406 | 17 | 2.10E-14 | ||
| ProSitePatterns | 390 | 400 | 11 | – | ||
| Pfam | 403 | 452 | 50 | 3.10E-12 | ||
| ProSiteProfiles | 404 | 455 | 52 | 12.896 | ||
| PRINTS | 406 | 420 | 15 | 2.10E-14 | ||
| ProSitePatterns | 442 | 452 | 11 | – | ||
| Pfam | 466 | 513 | 48 | 1.70E-11 | ||
| ProSiteProfiles | 467 | 518 | 52 | 13.72 | ||
| PRINTS | 508 | 526 | 19 | 2.10E-14 | ||
| Pfam | 518 | 567 | 50 | 4.10E-06 | ||
| ProSiteProfiles | 519 | 570 | 52 | 12.373 | ||
| PRINTS | 566 | 587 | 22 | 2.10E-14 | ||
| ProSiteProfiles | 571 | 622 | 52 | 14.886 | ||
| Pfam | 572 | 619 | 48 | 3.00E-14 | ||
| SMART | 621 | 690 | 70 | 1.10E-18 | ||
| SUPERFAMILY | 623 | 695 | 73 | 9.59E-18 | ||
| Pfam | 623 | 689 | 67 | 2.90E-13 | ||
| Gene3D | 624 | 696 | 73 | 2.70E-16 | ||
| ProSiteProfiles | 627 | 689 | 63 | 11.308 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0311279.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0311279.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.