Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0270249.1

Overview

Field Value
Gene ID Lj0g3v0270249
Transcript ID Lj0g3v0270249.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: histone acetyltransferase HAC1-like [Cicer arietinum] gi|502089455|ref|XP_004488916.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
240 264 25 – –
MobiDBLite
mobidb-lite
443 464 22 – –
PANTHER
PTHR13808
508 1694 1187 0 –
ProSiteProfiles
PS50134
657 738 82 15.226
IPR000197
SMART
SM00551
660 738 79 9.80E-25
IPR000197
Gene3D
G3DSA:1.20.1020.10
661 741 81 4.60E-14
IPR000197
SUPERFAMILY
SSF57933
661 742 82 1.57E-18
IPR000197
Pfam
PF02135
667 735 69 1.70E-12
IPR000197
MobiDBLite
mobidb-lite
872 894 23 – –
CDD
cd15614
1020 1092 73 1.15E-36 –
ProSitePatterns
PS01359
1021 1092 72 –
IPR019786
Pfam
PF00628
1051 1093 43 4.30E-07
IPR019787
Gene3D
G3DSA:3.30.40.10
1052 1093 42 1.30E-07
IPR013083
SUPERFAMILY
SSF57903
1054 1094 41 9.30E-08
IPR011011
ProSiteProfiles
PS51727
1110 1546 437 144.372
IPR031162
SMART
SM01250
1143 1440 298 2.30E-117
IPR013178
Pfam
PF08214
1152 1368 217 6.50E-29
IPR013178
SUPERFAMILY
SSF57850
1408 1478 71 2.12E-15 –
SMART
SM00291
1427 1471 45 0.02
IPR000433
ProSiteProfiles
PS50135
1427 1474 48 10.835
IPR000433
ProSitePatterns
PS01357
1433 1460 28 –
IPR000433
SUPERFAMILY
SSF57850
1529 1595 67 5.06E-15 –
SMART
SM00291
1547 1592 46 2.50E-07
IPR000433
Pfam
PF00569
1550 1591 42 4.00E-07
IPR000433
ProSiteProfiles
PS50135
1552 1594 43 11.724
IPR000433
ProSitePatterns
PS01357
1553 1580 28 –
IPR000433
ProSiteProfiles
PS50134
1606 1690 85 12.609
IPR000197
SUPERFAMILY
SSF57933
1609 1692 84 1.70E-22
IPR000197
Gene3D
G3DSA:1.20.1020.10
1609 1693 85 1.00E-23
IPR000197
SMART
SM00551
1610 1688 79 6.00E-36
IPR000197
Pfam
PF02135
1617 1687 71 2.00E-12
IPR000197

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003712
Molecular function Transcription coregulator activity A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
Subterm of
GO:0004402
Molecular function Histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016573
Biological process Histone acetylation The modification of a histone by the addition of an acetyl group.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0270249.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0270249.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.