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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR026899
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 48 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.653s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0164169.1
n.a. PREDICTED: callose synthase 12-like isoform X1 [Cicer arietinum] gi|502144098|ref|XP_004505578.1| chr0 77658080 77665851 +
3 domain predictions
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Lj0g3v0180419.1
n.a. PREDICTED: callose synthase 2-like isoform X3 [Cicer arietinum] gi|502087187|ref|XP_004488455.1| chr0 87762692 87780301 +
3 domain predictions
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Lj0g3v0281589.1
n.a. Callose synthase [Medicago truncatula] gi|357459077|ref|XP_003599819.1| chr0 145983130 145990639 +
3 domain predictions
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Lj0g3v0312429.1
n.a. PREDICTED: callose synthase 10-like [Cicer arietinum] gi|502133618|ref|XP_004501831.1| chr0 163082720 163106266 +
3 domain predictions
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Lj0g3v0312429.2
n.a. PREDICTED: callose synthase 10-like [Cicer arietinum] gi|502133618|ref|XP_004501831.1| chr0 163088394 163106266 +
3 domain predictions
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Lj1g3v4692750.1
n.a. PREDICTED: callose synthase 5-like [Cicer arietinum] gi|502137024|ref|XP_004502937.1| chr1 55671504 55672265 -
3 domain predictions
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Lj3g3v2809250.1
n.a. PREDICTED: callose synthase 12-like [Cicer arietinum] gi|502083160|ref|XP_004487377.1| chr3 34438899 34439742 +
3 domain predictions
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Lj4g3v2742860.1
n.a. PREDICTED: callose synthase 5-like [Glycine max] gi|356511176|ref|XP_003524305.1| chr4 36845458 36848177 +
3 domain predictions
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Lj5g3v2295690.1
n.a. PREDICTED: callose synthase 3-like [Cicer arietinum] gi|502121590|ref|XP_004497380.1| chr5 33642925 33657325 +
3 domain predictions
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Lj6g3v0920680.1
n.a. PREDICTED: callose synthase 7-like [Cicer arietinum] gi|502128499|ref|XP_004499983.1| chr6 9384823 9409230 +
3 domain predictions
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Lj6g3v2041890.1
n.a. PREDICTED: callose synthase 11-like isoform X1 [Cicer arietinum] gi|502077901|ref|XP_004485779.1| chr6 24010592 24017632 -
3 domain predictions
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LotjaGi1g1v0231700.1
n.a. Callose synthase-like protein; TAIR: AT2G36850.1 glucan synthase-like 8; Swiss-Prot: sp|Q9SJM0|CALSA_ARATH Callose synthase 10; TrEMBL-Plants: tr|A0A0B2P9C4|A0A0B2P9C4_GLYSO Callose synthase 10; Found in the gene: LotjaGi1g1v0231700 LjG1.1_chr1 54345078 54427301 -
3 domain predictions
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LotjaGi1g1v0231700.2
n.a. Callose synthase-like protein; TAIR: AT2G36850.1 glucan synthase-like 8; Swiss-Prot: sp|Q9SJM0|CALSA_ARATH Callose synthase 10; TrEMBL-Plants: tr|A0A072V9X9|A0A072V9X9_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi1g1v0231700 LjG1.1_chr1 54354031 54427366 -
3 domain predictions
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LotjaGi1g1v0231700.3
n.a. Callose synthase-like protein; TAIR: AT2G36850.1 glucan synthase-like 8; Swiss-Prot: sp|Q9SJM0|CALSA_ARATH Callose synthase 10; TrEMBL-Plants: tr|A0A0B2P9C4|A0A0B2P9C4_GLYSO Callose synthase 10; Found in the gene: LotjaGi1g1v0231700 LjG1.1_chr1 54354335 54419183 -
3 domain predictions
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LotjaGi1g1v0231700.6
n.a. Callose synthase-like protein; TAIR: AT2G36850.1 glucan synthase-like 8; Swiss-Prot: sp|Q9SJM0|CALSA_ARATH Callose synthase 10; TrEMBL-Plants: tr|A0A0B2P9C4|A0A0B2P9C4_GLYSO Callose synthase 10; Found in the gene: LotjaGi1g1v0231700 LjG1.1_chr1 54354335 54426979 -
3 domain predictions
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LotjaGi1g1v0319000.1
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805485 76821846 -
3 domain predictions
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LotjaGi1g1v0319000.2
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805817 76821482 -
3 domain predictions
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LotjaGi1g1v0319000.5
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|A0A151ST57|A0A151ST57_CAJCA Callose synthase 5; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805823 76821482 -
3 domain predictions
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LotjaGi1g1v0319000.6
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805823 76821482 -
3 domain predictions
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LotjaGi1g1v0554200.1
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A0B2QTX7|A0A0B2QTX7_GLYSO Callose synthase 3; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108615963 108642084 +
3 domain predictions
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LotjaGi1g1v0554200.2
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|I1KZH4|I1KZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616035 108642257 +
3 domain predictions
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LotjaGi1g1v0554200.3
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A0B2QTX7|A0A0B2QTX7_GLYSO Callose synthase 3; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616289 108641390 +
3 domain predictions
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LotjaGi1g1v0554200.4
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|G7KWP5|G7KWP5_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616289 108641390 +
3 domain predictions
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LotjaGi1g1v0554200.5
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A0B2QTX7|A0A0B2QTX7_GLYSO Callose synthase 3; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616304 108641390 +
3 domain predictions
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LotjaGi1g1v0554200.6
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A0B2QTX7|A0A0B2QTX7_GLYSO Callose synthase 3; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616304 108641390 +
3 domain predictions
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LotjaGi3g1v0126900.1
n.a. Callose synthase; TAIR: AT1G05570.1 callose synthase 1; Swiss-Prot: sp|Q9AUE0|CALS1_ARATH Callose synthase 1; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588416 15625572 -
3 domain predictions
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LotjaGi3g1v0126900.3
n.a. Callose synthase; TAIR: AT2G31960.1 glucan synthase-like 3; Swiss-Prot: sp|Q9SL03|CALS2_ARATH Callose synthase 2; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588691 15624820 -
3 domain predictions
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LotjaGi3g1v0126900.4
n.a. Callose synthase; TAIR: AT1G05570.1 callose synthase 1; Swiss-Prot: sp|Q9AUE0|CALS1_ARATH Callose synthase 1; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588691 15624820 -
3 domain predictions
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LotjaGi3g1v0147300.1
n.a. Callose synthase-like protein; TAIR: AT3G14570.1 glucan synthase-like 4; Swiss-Prot: sp|Q9LUD7|CALS8_ARATH Putative callose synthase 8; TrEMBL-Plants: tr|A0A0S3SK62|A0A0S3SK62_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0147300 LjG1.1_chr3 19781456 19801717 +
3 domain predictions
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LotjaGi3g1v0147300.3
n.a. Glucan synthase-like protein; TAIR: AT3G14570.1 glucan synthase-like 4; Swiss-Prot: sp|Q9LUD7|CALS8_ARATH Putative callose synthase 8; TrEMBL-Plants: tr|A0A0S3SK62|A0A0S3SK62_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0147300 LjG1.1_chr3 19781911 19800850 +
3 domain predictions
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LotjaGi3g1v0444600_LC.1
n.a. Callose synthase-like protein; TAIR: AT4G03550.1 glucan synthase-like 5; Swiss-Prot: sp|Q9ZT82|CALSC_ARATH Callose synthase 12; TrEMBL-Plants: tr|A0A0D2PWD8|A0A0D2PWD8_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0444600_LC LjG1.1_chr3 85750440 85755716 +
3 domain predictions
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LotjaGi3g1v0453900.1
n.a. Callose synthase-like protein; TAIR: AT4G03550.1 glucan synthase-like 5; Swiss-Prot: sp|Q9ZT82|CALSC_ARATH Callose synthase 12; TrEMBL-Plants: tr|G7JSU8|G7JSU8_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi3g1v0453900 LjG1.1_chr3 86730300 86744013 -
3 domain predictions
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LotjaGi3g1v0453900.2
n.a. Callose synthase-like protein; TAIR: AT4G03550.1 glucan synthase-like 5; Swiss-Prot: sp|Q9ZT82|CALSC_ARATH Callose synthase 12; TrEMBL-Plants: tr|G7JSU8|G7JSU8_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi3g1v0453900 LjG1.1_chr3 86738492 86743882 -
3 domain predictions
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LotjaGi3g1v0453900.3
n.a. Callose synthase-like protein; TAIR: AT4G03550.1 glucan synthase-like 5; Swiss-Prot: sp|Q9ZT82|CALSC_ARATH Callose synthase 12; TrEMBL-Plants: tr|A0A0L9V5H8|A0A0L9V5H8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0453900 LjG1.1_chr3 86738579 86743873 -
3 domain predictions
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LotjaGi4g1v0409500.1
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7LE18|G7LE18_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi4g1v0409500 LjG1.1_chr4 78548633 78564442 -
3 domain predictions
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LotjaGi4g1v0409500.5
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|A0A072TUS9|A0A072TUS9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi4g1v0409500 LjG1.1_chr4 78549273 78563883 -
3 domain predictions
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LotjaGi5g1v0362200.1
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602820 67616745 +
3 domain predictions
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LotjaGi5g1v0362200.2
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602880 67616180 +
3 domain predictions
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LotjaGi5g1v0362200.3
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602884 67616180 +
3 domain predictions
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LotjaGi5g1v0362200.4
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602884 67616180 +
3 domain predictions
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LotjaGi5g1v0362200.5
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602892 67616180 +
3 domain predictions
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LotjaGi5g1v0362300.1
n.a. Callose synthase-like protein; TAIR: AT3G07160.2 glucan synthase-like 10; Swiss-Prot: sp|Q9SFU6|CALS9_ARATH Callose synthase 9; TrEMBL-Plants: tr|I1NJA0|I1NJA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362300 LjG1.1_chr5 67619858 67661713 +
3 domain predictions
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LotjaGi5g1v0362300.2
n.a. Callose synthase-like protein; TAIR: AT3G07160.1 glucan synthase-like 10; Swiss-Prot: sp|Q9SFU6|CALS9_ARATH Callose synthase 9; TrEMBL-Plants: tr|I1NJA0|I1NJA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362300 LjG1.1_chr5 67620214 67658195 +
3 domain predictions
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LotjaGi5g1v0362300.3
n.a. Callose synthase-like protein; TAIR: AT3G07160.2 glucan synthase-like 10; Swiss-Prot: sp|Q9SFU6|CALS9_ARATH Callose synthase 9; TrEMBL-Plants: tr|I1NJA0|I1NJA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362300 LjG1.1_chr5 67620214 67658195 +
3 domain predictions
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LotjaGi5g1v0362300.4
n.a. Callose synthase-like protein; TAIR: AT3G07160.2 glucan synthase-like 10; Swiss-Prot: sp|Q9SFU6|CALS9_ARATH Callose synthase 9; TrEMBL-Plants: tr|I1NJA0|I1NJA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362300 LjG1.1_chr5 67620501 67658195 +
3 domain predictions
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LotjaGi6g1v0167800.1
n.a. Callose synthase-like protein; TAIR: AT1G06490.1 glucan synthase-like 7; Swiss-Prot: sp|Q9SHJ3|CALS7_ARATH Callose synthase 7; TrEMBL-Plants: tr|G7IXI4|G7IXI4_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi6g1v0167800 LjG1.1_chr6 45304801 45328043 +
3 domain predictions
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LotjaGi6g1v0332000.1
n.a. Callose synthase-like protein; TAIR: AT4G04970.1 glucan synthase-like 1; Swiss-Prot: sp|Q9S9U0|CALSB_ARATH Callose synthase 11; TrEMBL-Plants: tr|A0A072V5B8|A0A072V5B8_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi6g1v0332000 LjG1.1_chr6 64701955 64709348 -
3 domain predictions
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LotjaGi6g1v0332000.2
n.a. Callose synthase-like protein; TAIR: AT4G04970.1 glucan synthase-like 1; Swiss-Prot: sp|Q9S9U0|CALSB_ARATH Callose synthase 11; TrEMBL-Plants: tr|A0A072V5B8|A0A072V5B8_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi6g1v0332000 LjG1.1_chr6 64703672 64709063 -
3 domain predictions
 –