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LotjaGi1g1v0684200.1

Overview

Field Value
Gene ID LotjaGi1g1v0684200
Transcript ID LotjaGi1g1v0684200.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125107647..125113747) extracted from Lotus japonicus Gifu genome v1.2.

TATAAGCCGTTTCCGAAATGGTGGGCCCCAGATGATATTTTCCATCCCCTTAATTTTCCCCTAAATGACCAGAAACAAAC ACGGTATAAGTCCCTAACTCTCTCCATTCTCCAAATATCCATCATTTATCACCGTTACTCCTATCTATGACTCGTCGAAC GTCACGCCACGCCGCTCCGTCGCCGTCGTGAGAGGACGCTGCTCCGATTCTGCAATTTTCCCTTCTCCATTTCACCACCA TCAACGAGATCGGTATGTTATTCAGTAATTTTGCATCGAAACTAGGATATGTAGTTGAGTAATTGAGTTTCCTTATCCAA GTAGATTCATCGTTGATTCTTGATATGCGTTATTGTTTTTCACATGATCTTATGTTGATATGCTGAAACATACACATTTA GTTTTATGGGTGCACTGTGTTGTTTCTAGTGTGTTACTTTTCAGCTAACATGCTTCACCAATTCAGGAATCATGTCTAGG GTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCACGAAGTCGAA AAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGCGTAGTTTTA ATAATTTGGATACTATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCTCGTAAGGCG AGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCTTGCCCAGGA GGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCACTGGTATTG CTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGAAGGGGTAGT GGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGCTCGTCTTCT TGGTAAATGCTGTCTTTCCTTTATCCATGAAGTGTTTTTATTGATGAAAATTTTCTTCCTTGTAATCAACCTTACCAATT TGCCTCTTTTTTTTTTTCTTTGTTGTTTGAAAGAAGGTGGAAGTGATTTGGTTATATTATATTTGTTCTGGTGCATTTAT CTATTTTACTTGGAGAGTAACCTAGGTTTTGATGATTTATGGGAAAATGAGGGAAAAAGTAAAAAGATGAGAATTTTCTT TTTTTGTAATCAACTGTCCATTTCTGATCAGCTTTCCATGGTTTTCTCTTTGGCTTTTGTCGTTTGGAAGAATGTAGAAG TGATTTGATTACATTTGGACATTTGGTTCTGTGCATTTATCTATTTTACTTGAAGAGTCACATAGGTTTTGATGATTTTA TAGAAAAAAAAAGAGGAAGATAGTAACAGAGGATCGGTAAACTAGTAAACTACCCCACCGTATAATGAGTTACAGAGAGA AGAGAAGGATCATGCACTGGATTCTCATTCCAAAGGCTCTAAAACCTTTCATTCCTAGTGAGCCATTGCTAGATGATGCT ATCTAGCCTTTTTTTTTTCAAAATGATTCATCTAAATGGGCTATCATGATGTCAAATATTACTTGGAGTTGGCAAATGTT TCTCAGTGCCCTCTCTGGCAGTCAATATTACTACGTGTTATTGGCATGATAATAGTGTTGAAGAAAGTTATTAAAGGTAT AAACATTCCAAGGATGACTTAATTTATTGCTGCCTTGATTGATCTGATTGTTGACTAATTTGCTTTAAATGTGTTCAAAG TGAGTTGGAGTTTATCTATGAATTTGTTTATTTATTTATTCATTCATTTTTTGGCTGGTCTTTCTGTTCTTTCTTCTATT ATTTTATTTTGGGATGGGTCTATGCAATATTCCGTTATCACTCAATGAAACGTTTAGGCTTACTCCTTGAAATTTTCAGG TCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCACGTGTTCTTGAAA ACCTGGGTGCTGATCCTTCTAATATTCGCTCTCAGGTTTCTATTGTATCCTCATTTATTCATTTTCCCGCACACTATATG GACATATCTTTTATCCTTTTTTTTAATCTTGTACTCCATTGAGTGAGAACAGGTTATTCGCATGGTTGGTGAGGGTGCTG ACACTATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACC AAGCTAGCAGAGGAGGTAATTACCAGTTCCTAGTTTTCTTCACGACATATGGTATAGTTTTTTTGTGTGTTTAAAAGCAT ACTTATTTTCTTCCGAAATCAAAATCTCAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCAC TCAAATTTTGGGCCGTCGTACCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAG GTCTTGCTCAACGGATTGCAACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTTAGTATGAATTATTTTACATTG GTTTCATTAAGGGAATTTTCTATTCCATTTTCAGCTTTATCATCAACTTGCTTGGAGCACCCTGCCTTATTTTCAGTCAT TTCATTTGTGAGATTAATTTTGCATTTGTATTTGATAAGTATTGAATCTATTGATTAAATTCTTGGATTTGGTATTTTAT CACACTTTTGGGGATCCTGAATAATGTTAGTTTTGTCTATGATTTAGGTAATAACCCTTGATATGGGTCTACTTGTTGCT GGAACTAAATATCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCT TTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAG CTCTTGCCAGAGGGGAACTACAGGTCATATTTCCCTTGACGGCTTGACGTGTTCAAAATATATTTCCTTTTGATTCTGAC CTCAAATTCATTTTTTTTGTTGTTGTTGGGCTAGGGGTTTCATTTTATATACCCTATCCTTGTCATCAATCATATCTATC AATTATCTTGTTCCTTCATGGCCAATGCTCGCCTGCATTGGTTGACGGTGAATAAGTTACTAAATCAAGTTTCTTCTCTT GCGTTGTGCTTGTGCACAAATCCCCATTTTTTCCAATATGCTTTGTTAGTTTTGACTTTTGACAACAATGTATATTTTAG TTTTTTTTACTATGAAGGTGTTTTGCTAGCTTGTCTAATATATTTTAGTTTTTAAATCTTGTACCTTGTACCCGTACCTG GTACCGGTACCGTAGCTGTATCATTGCAACTTAGATGATCATGGCAGACTTATGGTGAAATGTGAAGACATATGGTTATA TGATAATATCTATGCTAAACTTGTCACTATTGCTCATTTGGAACTGTTCTAAAAAAATGACTGCGTATTATGCAGTGTAT AGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAAAG TGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGC TATACAGATGATGCTCTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGGTTTATCATAATTTATACTTCTGCACT TCCTCTGTTCATTTTCCTTTTCATTTATGCTGGAAGGGAATATTTCTTTTAATTGTTATTTACAATATTAAACTGAAAAC TCTTCACTGAATTTATGTTGATCTTCTGGAATATAGCATTATGTATATCTTAAGTAATTTCTAGCTTATAAAAAATGGTG CCTCCTGCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACAT GCCCAGGTACATTGTGTGACTCCCCTCCCTGAATCAACAGTTAATCATTTGTCTATTGTTGAACTAATTGAACCAGATTT CCATATTTACAGTTGCCTGAAGAAGCAAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGATGAAGCTGT TCGCAACCAAGACTTTGAAAAGGTAACGCTTTTATCTGAGATTTAACCATTAAAGTTTTAACATCAACTAACGTTTTCAG GATATAATAATCCTTACTCCAATGAGTAATCTTGTTTGTCTTCAAAAAGAGATGTTCTACCTTTCAGTTAACATTAAAAG AATGGAGGATTATTTTCCATAAGTTCTGATGTGACTTCTAGTTCTAGTTTGTTGAGTGTAAAGTGCATTTAGTGGTTTGT TTCTTGTTCATACCAATTATGTCTCCAAATTTATTCGCTTTTTGGATTATAAGTAACGGGCTTGACGATACATGGATTTC TTTACAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGA TGAGTAAGGCAGAGAGTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGG ACTGGTATTCCTGTTGACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGT TATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTC CAATTGCAAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTT GGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACC TCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTG ATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAA GGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCG TAAAATAGGATTTGACCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTA AGCAGTACTTTAGGCCTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAG GAGATAGCTGACATAATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATT TAAGGAGAGAGTGGTTGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGG AGGACAGCATGGCAGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGT AATGTGATTGTGCTCAATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGAGGTTCTTCCTGTGTAAATCGTAAT AACATGGTTGCCTTGCTAAGTTATTTGTACTTTTTTAAAAAAATATTATACAGTCATAGCTGTTTTAGTTGTAAAAAACT TTAATGGACTACTGGTCTGGTTTGCCCATATAGCCAACATAGCAAGCAAAGAGAGGTTGGGATGAATGAAACTCAACGCT TTGTTTGCCATACCTTGGATATGTAGCATCAATGACCAATTTTAATGGAGCATGTTAGTATAAAAAAACTCGGTGTAATA CGTGGTATTAGATTGGATATGAGTGTAAAAATGTTTTACTGTTACCGTGTATCAAAATTAAAATCTTATAATTAAACATC ATTACATTATTTTTAATTTTA 

CDS sequence (LotjaGi1g1v0684200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTAGGGTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCAC GAAGTCGAAAAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGC GTAGTTTTAATAATTTGGATACTATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCT CGTAAGGCGAGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCT TGCCCAGGAGGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCA CTGGTATTGCTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGA AGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGC TCGTCTTCTTGGTCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCAC GTGTTCTTGAAAACCTGGGTGCTGATCCTTCTAATATTCGCTCTCAGGTTATTCGCATGGTTGGTGAGGGTGCTGACACT ATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCT AGCAGAGGAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCACTCAAATTTTGGGCCGTCGTA CCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCA ACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATA TCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCTTTTCATTGATG AAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGA GGGGAACTACAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCG ATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGA TTCACCACAAGCTCCGCTATACAGATGATGCTCTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGTGATCGGTTT TTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACATGCCCAGTTGCCTGAAGAAGC AAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTG GAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCA GAGAGTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTATTCC TGTTGACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGG ATGAAGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTCCAATTGCAAGC TTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGA GGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACCTCCTGGATATG TTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAG AAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAAGGGAGAACTGT GGACTTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGAT TTGACCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTT AGGCCTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGA CATAATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAG TGGTTGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGGAGGACAGCATG GCAGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGT GCTCAATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGAGGTTCTTCCTGTGTAA 

Protein sequence (LotjaGi1g1v0684200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMS RKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIG RGSGFVAVEIPFTPRAKRVLELSLEEARLLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRSQVIRMVGEGADT IAATVGPGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA TGDVPETLEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALAR GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLSYQYISDRF LPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKA ESEAADGGPVVTEVDIQHIVASWTGIPVDKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS FIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE KAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYF RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSM AEKMLAREIKEGDSVIVDADSDGNVIVLNGSSDSGAPESLPEVLPV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 66 925 860 0.0
PANTHER 66 925 860 0.0
Gene3D 92 241 150 6.4E-58
ProSiteProfiles 94 236 143 48.699
SUPERFAMILY 95 235 141 4.32E-30
Pfam 108 160 53 4.8E-17
Pfam 184 235 52 2.3E-17
Gene3D 246 437 192 1.1E-73
SUPERFAMILY 254 531 278 1.24E-77
CDD 277 429 153 3.15044E-21
SMART 294 434 141 2.3E-13
Pfam 299 415 117 4.1E-14
Coils 348 368 21 -
ProSitePatterns 389 401 13 -
Pfam 437 538 102 8.5E-35
Gene3D 438 567 130 3.0E-39
Coils 507 527 21 -
ProSiteProfiles 511 546 36 11.605
Gene3D 569 815 247 1.3E-97
SUPERFAMILY 586 903 318 3.22E-79
CDD 611 759 149 2.00248E-17
Pfam 636 810 175 2.0E-55
SMART 637 818 182 2.6E-9
PRINTS 641 659 19 6.4E-41
ProSitePatterns 671 689 19 -
PRINTS 686 704 19 6.4E-41
PRINTS 715 733 19 6.4E-41
PRINTS 748 762 15 6.4E-41
SMART 817 907 91 6.5E-31
Gene3D 817 917 101 1.8E-26
Pfam 817 897 81 2.9E-23

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Biological process Protein metabolic process The chemical reactions and pathways involving a protein. Includes protein modification.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0684200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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