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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0333900 |
| Transcript ID | LotjaGi1g1v0333900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79248894..79254523) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATGTCCCTGACCTAGTGGCTAGGCAAAGGCATGGTAACCATAAGGGATCAGGAAAATCAAAAAGATCAGCCAAAAT GATGTGCGCCTTACAAACAAGTGGATTTAGATTGGCAGGTTTCTCAGGACTTCGTACTTACAATCCTTTGGATACTATGC TGAGACCTGGACTTGATTTTCACTCTAAAGTATCAATTGCAACTTCTTCACGGCGGGGAAAGGCTACCAGAGGTGTACCC AAAGCCATGTTTGAACGTTTCACGGAGAAAGCAATCAAAGTAATTATGCTTGCCCAGGAGGAAGCAAGACGTCTCGGTCA CAATTTCGTTGGAACAGAGCAGATTCTATTGGGTCTTATAGGTGAAGGCACTGGTATTGCCGCCAAGGTTCTAAAGTCTA TGGGAATCAACCTTAAAGATGCACGTGTTGAAGTGGAGAAGATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATT CCATTTACTCCCCGTGCAAAGCGTGTCTTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTAAACATTTTTTCACCTT CCTACATTTCTTTGTATTAGCTAATTAATTTGTTGTAGATAGCATTTGTATCTTTAACAGAGTATTTTATGTCTTTTTCT CATCTATCTATTCATAACAATTTCTTAAAAAGTTGTATTCAGGTGTATTTTCTCTTAGCTTATTGAAACTCTGAGCCGTA TCTTGAAATTTTCAGGACACAATTATATCGGATCTGAGCACTTGCTTCTGGGCCTTCTTCGTGAAGGTGAAGGTGTAGCA GCACGTGTTCTTGAAAACCTGGGTGCTGATCCTACTAATATTCGCACACAGGCTAGTACTTTCCCTTCAGTTTCCCACAT ATTTTTGCTTTATATGTATACTTTTTTTACTCTTAATTTTGTGTTATTCTTACAATTTCATGGGATGATGCACACAGGTT ATTCGCATGGTGGGTGAGAGTGCTGATAGTGTAACTGCAACTGTTGGATCAGGAAGTAGTAGCAATAAGATGCCAACTTT GGAGGAGTATGGTACCAATTTAACCAAACTGGCAGAAGAGGTAAGGGAAACTCCTAGTTTTCTTCATGACAGATTATGGA TGATTTTTTGTGCTTAACAGCTTAATTATTTCTCATCTGCTCCCCAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCG CAAATTGAACGTGTCACTCAAATTTTAGGCCGTCGCACCAAAAACAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAA GACAGCAATTGCTGAAGGTCTTGCTCAGAGGATTGCGAATGGTGATGTACCTGAAACCATAGAGGGGAAAAAGGTTAGTA TAAAACGTTAAACCTCTGCAGTCCTTAAAATTGGCTTTCAATTTCAGGGATTTGTGATTCTTTTCAGTACCATTAACATG TTGACTTGCTGAGTTTGTGTAAGGTAATTCTGAAACAATATCCTGTTAGTTTTCTGGTTGTGGAACAGTGTAATTCCACA TGTTGATCAAAAGGAGTTTTATCGCACCAAGATGTTCAAGCTAGTATCTTGGACATGCTGTCTCATTTTTAGTCATATGA TTGTTTGTTATTCATTTCATGTTAGTTGTTAAGTTTAGCATAGTTATTGTTGTAAACTGTTTGCTTTGTGGATGTTTAGT ATGTTTTTGATAAGTCCTGATTAATGTGAATACTTTCTCTGCTTAATTGTATCTGGCGTACAACAGTCTGTTTTACATTT GTTTATCTCCAGTGTTGGCTGTTAAATTAATTACAAGCAAATAGGTAGCCACGTTCTTTAATCATTTTTAATTACCTTTC ACATCTATGGCTATGAAACATCCAGTGATTAAGATCAATGCTTTTGAAGGTTTCATATATGTGGATTGTTATTCTTTGAT ACTTCCCGATTATATTTTTTATGAACCAGCTATTTCTAAAGCTTAATCTATTAAGTGAAAGTACTTCAATGATTTTGTAT CAAACATGCCCCTTCACGTGAGAGCCCCAAAATGACAAGCTGTTGAGTGAAAGTGCATGAATGGTTATATTTCCAACATA CTCTAATAGTGTACTTTATCCTGCATGAATTAGGTTATTACCCTCGACATGGGTCTTCTTGTAGCTGGAACTAAATACCG TGGTGAGTTTGAGGAGAGGTTGAAGAAATTGATGGAAGAAATCAAACAAAGTGATGAGATAATACTTTTTATCGATGAAG TGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCTAACATTCTAAAACCAGCTCTCGCTAGAGGT GAACTACAGGTAGTGTTTTCTTTGAAACATTTAAAATGTATTCGTGGCATACTGTCTCTGCCCTTGAAGTTAGTGTGCAA TTATCAAGAGGATGAAAGAATAGGATTTGGTTGTTGGATTTTATGGGAACATTCCTGAACTTTTTGTTACAAGAAAAAAA GGACTAAACACTTCTTTCTCTGGTCAAAAGCTGCATTATCAACTACTAAGTATACAAAAAGAGCATATTCTTGTCATTTA GTTTTTGTGAATAGTTAAAGCCATTTTGAGACATTTAATCAGTCTGAATGGGTCAGCTATCTAGTCTTAATGCTGACTTA TGGTCAGAACTTGTCGCTGGCTTGTAGTTAAGAATAAAAATTAAAAGATATTCTGAAGTGTCAAAGTTAGTATTGGAACT TTTTTATCCAGAAGTTCATGCATTGGCATTTCCAACTGTTTCAGTCTTGTATGGTAATTGATACAGAATGGTCAATGTAT CCATATTTAAGTCTTCATGTCTAAAACATAATGAGCATCTTATATTTAATAGATGTGGATAAATTCACTCTCGGCTTTTT ATAATGAGATTGTACCAAGTCTAAAACATGTTCCCATAATATGTCTCTGCAGTGTATTGGAGCCACAACATTGGATGAAT ACAGGAAGCACATTGAAAAAGATCCTGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAGCCAACTGTAGATGAA ACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAAATTCACCACAAGCTCCGCTATACTGATGAGTCTCTTGTAGC TGCTGCACAGCTGTCATACCAGTATATTAGGTTTGTCATGATTTATCTGTCTGCACCTTCTCTGTTCATTTGCCATGGGA TTTATGCTGGATTACAGGAATTTTTCTTTCAATGTTACTTTTTTAAGTTGTAGGGTTCCCTCTGAAAAGTGGCTTCTGGA ATTTAGTTCTAGGAGTCTTCTTTGAATCACACTATTTGCATAGGAATCTATGAAATACTGGAAATCTGATAGCTAAAATT GGTAAAGTATGATTTGCATAGGAAGTATCCTCTGATTTTTTTTTTTTCAAGTTTTATTGACAGATCCATTATGGATATGG CATACATACAATTCTTTTTCTTTCTAATTAAAACGACTATGTTTTGATATCCCTGGATTCTTCTTCCCTTTCTTACAAAG TGCTGCTGCTTCGCCTGACATGTTACATGGGAAATAATATAATTCGATACAGACAGTAGAAAGATGTCCTACCAATCTTT TATTTGATGATTACAAGTATCTTTTTTAAGTTTATTGTCATCTACCGATATATGTATTAATGAGAAATGATCTGTACCTC CTTAATACATATCATGCATCTATGTAATCTTTTGTGTGTGTGTATGTAGGCTGAAACATGTTCTAAATTTTTAAGAATTC CCCAAATTTATCTTGTCTTACCCATGTTTTATCAAATATATGGACTACTTAGGTTGGGATTCTAATGTAGCTGTTTGATT AATATTCAAACTGTTCATTCTATCTTCTTTTTCTCTTGCTCTAAATCTTAACCAAATAATAATGCTGTACCCTGCAGTGA TCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCAAGAGTTAGGCTTCAACATGCACAGGTATATT GTCTGTCTACCTTTATCTAGTAGATTTAGTTTCTGTTATTGTGCTAATTGGGCTAGCTTTATGTACTTACAGTTACCTGA AGAAGCTAGAGAACTTGACAAGGAGGTGAGGCTGATTATTAAGGAGAAAGAAGAATCTGTTCGCAACCAAGACTTTGAAA AGGTAATGTCTTCCTCTGAAGATTTAACTTGTAAAGCTACAATGTCACGTTTTCTGGACTGTCAACTACTTTCACCCGAT GAGATAATGTTGTTTGTCACAGAAGTAATGCTTTTGCTTACGTCAATATAAGGAAAATGATTGGCATTTTATAATGTAGT TCTATGTTGACTTCTGTTGCGTATGAAAAACAATGTAGTGGTTTGTTCCTTGTTCTGATGTATTAAATTTTGGCTATTAA ATTGTGACTTGATGATACATCACTTTTTAATAGGCTGGAGAGCTACGAGACAAAGAAATGGATCTTAAGGCACAGATCTC AGCACTTGTGGAGAAAGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGAGATGCAGGTCCTGTTGTGACTGAAGTTG ATATCCAACACATTGTGTCTGCCTGGACTGGTATTCCTGTTGAAAAAGTGTCAACAGATGAATCTGATCGCCTCCTCAAG ATGGAAGACACTTTACACAAGCGAATCATTGGCCAAGATGAAGCAGTGAAAGCCATTAGTCGGGCTATCCGTCGAGCTCG GGTTGGTTTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGG CCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCAC ACTGTCTCCAAACTTATTGGTTCACCTCCAGGATATGTTGGTTACACTGAAGGCGGTCAATTGACTGAGGCTGTTCGGCG TCGTCCTTACACTGTTGTGCTATTCGATGAGATTGAGAAAGCCCATCCCGATGTGTTCAACATGATGCTTCAGATCCTGG AAGATGGAAGACTAACAGACAGCAAGGGTAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACTTCAAATGTCGGA AGCAGTGTGATCGAGAAAGGAGGCCGCCGAATTGGGTTTGATCTTGATTATGATGAGAAGGATAGCAGTTACAACAGAAT CAAGAGCTTGGTGACCGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAACAGGTTGGATGAAATGATTGTTTTCA GGCAACTCACAAAGCTGGAGGTCAAGGAGATAGCAGACATAATGCTCAGGGAGGTGTTTCAGAGACTCAAGAACAAAGAG ATTGAACTTCAAGTGACAGAAAGGTTCAGGGACAGGGTGGTTGACGAAGGTTACAATCCTAGTTACGGAGCTAGGCCTCT AAGAAGAGCGATAATGCGACTCTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGCGACTCTG TCATAGTGGACGTTGATTCTGACGGTAATGTGATCGTGCTCAATGGTAGCAGTGGCACCCCGGAGTCGTTACCAGAGGCT CTTCCTGTATAAAGAAGTTACCTTTGTTAG
CDS sequence (LotjaGi1g1v0333900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTGCGCCTTACAAACAAGTGGATTTAGATTGGCAGGTTTCTCAGGACTTCGTACTTACAATCCTTTGGATACTAT GCTGAGACCTGGACTTGATTTTCACTCTAAAGTATCAATTGCAACTTCTTCACGGCGGGGAAAGGCTACCAGAGGTGTAC CCAAAGCCATGTTTGAACGTTTCACGGAGAAAGCAATCAAAGTAATTATGCTTGCCCAGGAGGAAGCAAGACGTCTCGGT CACAATTTCGTTGGAACAGAGCAGATTCTATTGGGTCTTATAGGTGAAGGCACTGGTATTGCCGCCAAGGTTCTAAAGTC TATGGGAATCAACCTTAAAGATGCACGTGTTGAAGTGGAGAAGATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGA TTCCATTTACTCCCCGTGCAAAGCGTGTCTTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGACACAATTATATCGGA TCTGAGCACTTGCTTCTGGGCCTTCTTCGTGAAGGTGAAGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCC TACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGATAGTGTAACTGCAACTGTTGGATCAGGAAGTA GTAGCAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTAACCAAACTGGCAGAAGAGGGAAAGTTGGATCCTGTT GTGGGAAGGCAGCCGCAAATTGAACGTGTCACTCAAATTTTAGGCCGTCGCACCAAAAACAATCCTTGTCTTATTGGAGA ACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGAGGATTGCGAATGGTGATGTACCTGAAACCATAGAGG GGAAAAAGGTTATTACCCTCGACATGGGTCTTCTTGTAGCTGGAACTAAATACCGTGGTGAGTTTGAGGAGAGGTTGAAG AAATTGATGGAAGAAATCAAACAAAGTGATGAGATAATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGC AGCTGAAGGGGCAATTGATGCTGCTAACATTCTAAAACCAGCTCTCGCTAGAGGTGAACTACAGTGTATTGGAGCCACAA CATTGGATGAATACAGGAAGCACATTGAAAAAGATCCTGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAGCCA ACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAAATTCACCACAAGCTCCGCTATACTGATGA GTCTCTTGTAGCTGCTGCACAGCTGTCATACCAGTATATTAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTG ATGAAGCTGGTTCAAGAGTTAGGCTTCAACATGCACAGTTACCTGAAGAAGCTAGAGAACTTGACAAGGAGGTGAGGCTG ATTATTAAGGAGAAAGAAGAATCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGACAAAGAAATGGATCT TAAGGCACAGATCTCAGCACTTGTGGAGAAAGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGAGATGCAGGTCCTG TTGTGACTGAAGTTGATATCCAACACATTGTGTCTGCCTGGACTGGTATTCCTGTTGAAAAAGTGTCAACAGATGAATCT GATCGCCTCCTCAAGATGGAAGACACTTTACACAAGCGAATCATTGGCCAAGATGAAGCAGTGAAAGCCATTAGTCGGGC TATCCGTCGAGCTCGGGTTGGTTTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGG GGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAA TTCATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCAGGATATGTTGGTTACACTGAAGGCGGTCAATTGAC TGAGGCTGTTCGGCGTCGTCCTTACACTGTTGTGCTATTCGATGAGATTGAGAAAGCCCATCCCGATGTGTTCAACATGA TGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGCAAGGGTAGAACTGTGGATTTCAAGAACACACTTCTTATAATG ACTTCAAATGTCGGAAGCAGTGTGATCGAGAAAGGAGGCCGCCGAATTGGGTTTGATCTTGATTATGATGAGAAGGATAG CAGTTACAACAGAATCAAGAGCTTGGTGACCGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAACAGGTTGGATG AAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTCAAGGAGATAGCAGACATAATGCTCAGGGAGGTGTTTCAGAGA CTCAAGAACAAAGAGATTGAACTTCAAGTGACAGAAAGGTTCAGGGACAGGGTGGTTGACGAAGGTTACAATCCTAGTTA CGGAGCTAGGCCTCTAAGAAGAGCGATAATGCGACTCTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCA AAGAGGGCGACTCTGTCATAGTGGACGTTGATTCTGACGGTAATGTGATCGTGCTCAATGGTAGCAGTGGCACCCCGGAG TCGTTACCAGAGGCTCTTCCTGTATAA
Protein sequence (LotjaGi1g1v0333900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMCALQTSGFRLAGFSGLRTYNPLDTMLRPGLDFHSKVSIATSSRRGKATRGVPKAMFERFTEKAIKVIMLAQEEARRLG HNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG SEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSSNKMPTLEEYGTNLTKLAEEGKLDPV VGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLK KLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP TVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRL IIKEKEESVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAETEAGDAGPVVTEVDIQHIVSAWTGIPVEKVSTDES DRLLKMEDTLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLREVFQR LKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGTPE SLPEALPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 887 | 851 | 0.0 | – | |
| PANTHER | 37 | 887 | 851 | 0.0 | – | |
| Gene3D | 56 | 205 | 150 | 1.8E-59 | ||
| ProSiteProfiles | 58 | 200 | 143 | 50.175 | – | |
| SUPERFAMILY | 59 | 200 | 142 | 2.35E-31 | ||
| Pfam | 72 | 124 | 53 | 2.2E-17 | ||
| Pfam | 148 | 199 | 52 | 2.3E-18 | ||
| Gene3D | 208 | 401 | 194 | 1.2E-73 | – | |
| SUPERFAMILY | 218 | 495 | 278 | 5.51E-77 | ||
| CDD | 241 | 393 | 153 | 1.94608E-21 | – | |
| SMART | 258 | 398 | 141 | 4.2E-13 | ||
| Pfam | 263 | 379 | 117 | 2.9E-14 | ||
| Coils | 312 | 332 | 21 | - | – | |
| ProSitePatterns | 353 | 365 | 13 | - | ||
| Pfam | 401 | 503 | 103 | 1.0E-33 | ||
| Gene3D | 402 | 531 | 130 | 8.1E-38 | – | |
| ProSiteProfiles | 475 | 510 | 36 | 10.72 | ||
| Gene3D | 532 | 779 | 248 | 5.1E-98 | – | |
| SUPERFAMILY | 550 | 868 | 319 | 9.42E-80 | ||
| CDD | 575 | 723 | 149 | 2.01228E-18 | – | |
| Pfam | 600 | 774 | 175 | 2.4E-55 | ||
| SMART | 601 | 782 | 182 | 3.3E-10 | ||
| PRINTS | 605 | 623 | 19 | 2.1E-41 | ||
| ProSitePatterns | 635 | 653 | 19 | - | ||
| PRINTS | 650 | 668 | 19 | 2.1E-41 | ||
| PRINTS | 679 | 697 | 19 | 2.1E-41 | ||
| PRINTS | 712 | 726 | 15 | 2.1E-41 | ||
| Pfam | 781 | 861 | 81 | 6.9E-24 | ||
| Gene3D | 781 | 881 | 101 | 6.7E-27 | – | |
| SMART | 781 | 871 | 91 | 1.0E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi1g1v0333900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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